prot_L-elsbetiae_contig1357.2718.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig1357.2718.1
Unique Nameprot_L-elsbetiae_contig1357.2718.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length590
Homology
BLAST of mRNA_L-elsbetiae_contig1357.2718.1 vs. uniprot
Match: D7FXJ0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FXJ0_ECTSI)

HSP 1 Score: 530 bits (1366), Expect = 1.650e-167
Identity = 343/602 (56.98%), Postives = 375/602 (62.29%), Query Frame = 0
Query:    1 MCDTGRLGELCLLRLADCPASSXXXXXXXXXXXXYSISEEEGWRPSAVVQGALWGLARGSNVADLVEGAAAAAGDWGAADGGGGKRGRSGIGSSRRRGEKRGRKANYFDCLYTLYMARGKAVEAARAQDELRE-------RWEGGAHSAAATLPFAAAAQRARLAALNALAVAPVXXXXXXXXXXXXXXXXXXXXXXXXXGAVASICPPLGERRLDAAGRPAGVRTAAVLEREAVAAAXXXXXXXXXXXXXXXXXXXXXXXXVSVTVVTRAGVSGVLEALRSAGRFEEAADVVLRGL-DQPRTMVDEMKKVVSDLALACVKAEDIAQGFEPGPIPPLQRGVGPLKPRVP-PAATASASVTTRT--KAAERAASLWPVLRQLLRLDGTDSGFSYHATAAKVLLEGMPASTLPKWLEDSYLGRPQLLPDPPADANAFPPPQPRALPAPWKVFTPGSGGDGARSPPDPTALLDMYVFDGRLEEACLFLSRLLDVEEVADIGALTRLTPETSGGTDFLPYASIDRLFALCEASLARQSTALAAGAGKAPGPAADGLNHAFETAQERLTQYFRIAKAVSDQAQPNRAA--AAAGGESSNTSAFMLTD 589
            MC++GRLGELC L LADCP                      GW PS VV  ALW LAR S+V DLV              GG G +GRS +              NY+DCLY  YMARG+ V AARAQDELRE       RW+   HSAA+TLPFAA AQRARLAALNAL+VA                             VASICPP GERRLD  GRPAGVRT AVL REAV+AA                          V    R    GV+EAL   GR+EEAADVVL GL  QPR MV+EM K+VS LA ACV+ EDIA+G+E GP+PPL RGVGPLKPRVP P+A A          +A E A SLWPVLRQLLRLD  D+ FSYH  A  VLLEGMPASTLP+W+EDSYLG  Q LPDPPA+ANAFPPPQPRAL APWK FT G GG+GA S PDPT LLDMYV DGRLEEACLFLSR+LD  EV DIGALT L PE  GGTD+LPYASIDRLFAL EASLAR          K     A GL  AFETAQERL  Y ++AKAVSDQAQPNRAA  AAAG    + SAFM+TD
Sbjct: 1292 MCESGRLGELCSLSLADCPHGG-------------------GWHPSGVVDSALWPLARRSSVDDLV--------------GGPGGKGRSRV--------------NYYDCLYAFYMARGEEVAAARAQDELRESPARSFDRWK--PHSAASTLPFAAGAQRARLAALNALSVA---------------GNAYPSSDDTAAATVASICPPAGERRLDGYGRPAGVRTVAVLGREAVSAAGAIGLAVVKGREGGRG--------ARVWWTVRGERRGVVEALALGGRYEEAADVVLEGLAHQPRLMVEEMDKLVSALARACVRTEDIAKGYEVGPLPPLVRGVGPLKPRVPVPSAEAXXXXXXXXXXRAPEHATSLWPVLRQLLRLDSADNNFSYHTAAVAVLLEGMPASTLPRWVEDSYLGLGQELPDPPANANAFPPPQPRALLAPWKAFTSGRGGNGA-SGPDPTKLLDMYVMDGRLEEACLFLSRVLDTREVGDIGALTELVPEKDGGTDYLPYASIDRLFALSEASLARSKGPPTTQ--KEGWVTAGGLAGAFETAQERLVGYLKVAKAVSDQAQPNRAAEAAAAGRGICDASAFMMTD 1818          
BLAST of mRNA_L-elsbetiae_contig1357.2718.1 vs. uniprot
Match: A0A6H5KLL3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KLL3_9PHAE)

HSP 1 Score: 517 bits (1331), Expect = 2.620e-165
Identity = 349/611 (57.12%), Postives = 382/611 (62.52%), Query Frame = 0
Query:    1 MCDTGRLGELCLLRLADCPASSXXXXXXXXXXXXYSISEEEGWRPSAVVQGALWGLARGSNVADLVEGAAAAAGDWGAADGGGGKRGRSGIGSSRRRGEKRGRKANYFDCLYTLYMARGKAVEAARAQDELRERWEGGAHSAAATLPFAAAAQRARLAALNALAVAPVXXXXXXXXXXXXXXXXXXXXXXXXXGAVASICPPLGERRLDAAGRPAGVRTAAVLEREAVAAAXXXXXXXXXXXXXXXXXXXXXXXX---------------VSVTV-VTRAGVSGVLEALRSAGRFEEAADVVLRGL-DQPRTMVDEMKKVVSDLALACVKAEDIAQGFEPGPIPPLQRGVGPLKPRVP-PAATASASVTTRT--KAAERAASLWPVLRQLLRLDGTDSGFSYHATAAKVLLEGMPASTLPKWLEDSYLGRPQLLPDPPADANAFPPPQPRALPAPWKVFTPGSGGDGARSPPDPTALLDMYVFDGRLEEACLFLSRLLDVEEVADIGALTRLTPETSGGTDFLPYASIDRLFALCEASLARQSTALAAGAGKAPGPAADGLNHAFETAQERLTQYFRIAKAVSDQAQPNRAA--AAAGGESSNTSAFMLTD 589
            MC++GRLGELC L LADCP                       W  S VV+ ALW LAR S+V DLV G                     G G SR          NY+DCLY  YMARG+ V AARAQDELRER E  AHSAA+TLPFAA AQRARLAALNAL+VA                   XXXXXXXX  VASICPP GERRLD  GRPAGVRT AVL REAV+AA                                       V V+V V  A VSG++EAL  AGR+EEAADVVL GL  QPR MV+EM K+VS LA ACV+ EDIAQG+E GP+P L RGVGPLKPRVP P A A    T     +A E A SLWPVLRQLLRLD  D+ FSYH     VLLE MPASTLP W+EDSYLG  Q +PDPPA+ANAF PPQP+AL APWK FT G GG+G  S PDPT LLDMYV DGRLEEACLFLSR+LD  E+ DIGALT L PE  GGTD+LPYASIDRLFAL EASLAR   A      K     A GL  AFETAQERL QYF++AKAVSDQAQPNRAA  AAAG  + + S FM+ D
Sbjct:  873 MCESGRLGELCSLSLADCPRGGD-------------------WHTSRVVERALWPLARRSSVDDLVGGPC-------------------GKGRSR---------VNYYDCLYAFYMARGEEVAAARAQDELRERLE--AHSAASTLPFAAGAQRARLAALNALSVA-----------GNAYPSSDXXXXXXXXXXVASICPPPGERRLDGYGRPAGVRTVAVLGREAVSAAGAIGLAVANAAKEEGVQEFGGRYAEXXXXXXXXXXXAVGVQVSVEVGNADVSGLVEALALAGRYEEAADVVLEGLAHQPRLMVEEMDKLVSALARACVRTEDIAQGYEVGPLPLLVRGVGPLKPRVPVPWAEAEGDTTXXXXXRAQEHATSLWPVLRQLLRLDSADNNFSYHTATVAVLLEEMPASTLPPWVEDSYLGLGQEVPDPPANANAFLPPQPQALLAPWKAFTSGRGGNGP-SGPDPTKLLDMYVLDGRLEEACLFLSRVLDTREIGDIGALTELVPEKDGGTDYLPYASIDRLFALSEASLARSKGAPTTQ--KEGRVTAGGLAGAFETAQERLVQYFKVAKAVSDQAQPNRAAEAAAAGRGTCDASTFMMMD 1420          
BLAST of mRNA_L-elsbetiae_contig1357.2718.1 vs. uniprot
Match: A0A836CGQ6_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CGQ6_9STRA)

HSP 1 Score: 81.6 bits (200), Expect = 2.600e-12
Identity = 92/297 (30.98%), Postives = 123/297 (41.41%), Query Frame = 0
Query:  273 LRSAGRFEEAADVVLRGLDQ--PRTMVDE-MKKVVSDLALACVKAEDIAQGFEPGPIPPLQRG-VGPLKPRVPPAATASASVTTRTKAAERAASLWPVLRQLL-RLDGTDSGFSYHATAAKVLLEGMPASTLPKWLEDSYLGRPQLLPDPPADANAFPPPQPRALPAPWKVFTPGSGGDGARSPPDPTALLDMYVFDGRLEEACLFLSRLLDVEEVADIGALTRLTPETSGGTDFLPYASIDRLFALCEASLARQSTALAAGAGKAPGPAADGLNHAFETAQERLTQYFRIAKAVSD 564
            L +AG  E AA + L    Q   R   D  + +VV+ LA AC + E  A G     +P    G  GPL    PP A A        +A  R    W +LR+LL RLDG ++ F+ H  A + +LE  P   LP+WL  S  G+         D                           A     P  LL + +  G L EAC   +RL D+E +AD G L         G D++PY ++D LFA CE     Q  + AAG G +       L  A + A++ L  Y R    V D
Sbjct: 1416 LLAAGCVEAAAALALAHWPQRAARARRDAALARVVAVLANACARYESNADGALETDMPLSDAGGAGPL---TPPGARAG------PEADRRRGDAWALLRELLFRLDGAETNFALHVAAVRAVLETRPRVPLPRWLVASIEGQ--------RDGXXX------------XXXXXXXXXXFAXXAAHPALLLGVLIEHGELIEACGIAARLFDLE-LADKGELAARRRGRRAGRDWVPYQTLDALFAACE-----QRLSAAAGGGDSAA-----LRLAHDCARDALELYLRDVVGVLD 1672          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1357.2718.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
D7FXJ0_ECTSI1.650e-16756.98Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KLL3_9PHAE2.620e-16557.12Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A836CGQ6_9STRA2.600e-1230.98Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR021717Nucleoporin Nup120/160PANTHERPTHR21286NUCLEAR PORE COMPLEX PROTEIN NUP160coord: 103..516

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1357contigL-elsbetiae_contig1357:17425..26666 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1357.2718.1mRNA_L-elsbetiae_contig1357.2718.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig1357 17350..26696 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig1357.2718.1 ID=prot_L-elsbetiae_contig1357.2718.1|Name=mRNA_L-elsbetiae_contig1357.2718.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=590bp
MCDTGRLGELCLLRLADCPASSSSSSSSSSSSLSYSISEEEGWRPSAVVQ
GALWGLARGSNVADLVEGAAAAAGDWGAADGGGGKRGRSGIGSSRRRGEK
RGRKANYFDCLYTLYMARGKAVEAARAQDELRERWEGGAHSAAATLPFAA
AAQRARLAALNALAVAPVPHGYGHGSSSPSAAAAAAAAGDDDDGAVASIC
PPLGERRLDAAGRPAGVRTAAVLEREAVAAAAAIGTGGVVAGGGFGAAGA
AAGAGVSVTVVTRAGVSGVLEALRSAGRFEEAADVVLRGLDQPRTMVDEM
KKVVSDLALACVKAEDIAQGFEPGPIPPLQRGVGPLKPRVPPAATASASV
TTRTKAAERAASLWPVLRQLLRLDGTDSGFSYHATAAKVLLEGMPASTLP
KWLEDSYLGRPQLLPDPPADANAFPPPQPRALPAPWKVFTPGSGGDGARS
PPDPTALLDMYVFDGRLEEACLFLSRLLDVEEVADIGALTRLTPETSGGT
DFLPYASIDRLFALCEASLARQSTALAAGAGKAPGPAADGLNHAFETAQE
RLTQYFRIAKAVSDQAQPNRAAAAAGGESSNTSAFMLTD*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR021717Nucleoporin_Nup160