mRNA_L-elsbetiae_contig13283.2545.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13283.2545.1
Unique NamemRNA_L-elsbetiae_contig13283.2545.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig13283.2545.1 vs. uniprot
Match: A0A6H5JXB1_9PHAE (Ku domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JXB1_9PHAE)

HSP 1 Score: 197 bits (502), Expect = 1.700e-58
Identity = 99/123 (80.49%), Postives = 108/123 (87.80%), Query Frame = 1
Query:    1 SLQTEVGVVLFGLPSTETANKLNDADNDDYLGVKEYCMLDKGSVKLLRKVAAIDVPDADSTEPAMGDLLDAMVVGMHAIRSRTLKKKYLRHVYLLTDAATPVQEASQLPEIVGMYTDATMECR 369
            S Q EVGVVLFGLP  ETAN+LN+A+N DYLGVKEYC+LDKGSV +LRKV A+D+PD  S EPAMGDLLDAMVVGMH IRSRTLKKKY+RHVYLLTDAATPV E SQL +IVGMYTD TMECR
Sbjct:   23 SKQHEVGVVLFGLPEAETANQLNEAENSDYLGVKEYCLLDKGSVAVLRKVEAMDIPD--SGEPAMGDLLDAMVVGMHMIRSRTLKKKYMRHVYLLTDAATPVAEVSQLGDIVGMYTDPTMECR 143          
BLAST of mRNA_L-elsbetiae_contig13283.2545.1 vs. uniprot
Match: A0A8K1C5B8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1C5B8_PYTOL)

HSP 1 Score: 64.3 bits (155), Expect = 1.620e-9
Identity = 43/112 (38.39%), Postives = 67/112 (59.82%), Query Frame = 1
Query:   13 EVGVVLFGLPSTETANKLN-DADNDDYLGVKEYCMLDKGSVKLLRKVAAIDVPDADSTEPAMG-DLLDAMVVGMHAIRSRTLKKKYLRHVYLLTDAATPVQEASQLPEIVGM 342
            EVGVVLFG  + ET+N+LN D   D+Y  V     +D  ++ +  K+  I  P AD   PA+  DLL+ ++V +  +  RT  KKY + + +LTDAA+ +++AS +  +V M
Sbjct:   62 EVGVVLFG--TEETSNQLNEDQGEDEYTNVTVLSDIDTPTLSVCEKLQTI-TPTAD---PAVKVDLLNGLIVALDLLFRRTEGKKYEKRLLVLTDAASKIEDASDIESVVEM 167          
BLAST of mRNA_L-elsbetiae_contig13283.2545.1 vs. uniprot
Match: A0A7R9UAZ4_9STRA (Hypothetical protein n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9UAZ4_9STRA)

HSP 1 Score: 62.0 bits (149), Expect = 1.040e-8
Identity = 35/93 (37.63%), Postives = 56/93 (60.22%), Query Frame = 1
Query:   13 EVGVVLFGLPSTETANKLNDADNDDYLGVKEYCMLDKGSVKLLRKVAAIDVPDADSTEPAMGDLLDAMVVGMHAIRSRTLKKKYLRHVYLLTD 291
            E+G+VL G  + +T N++N    ++Y  V E  ML K S+  LR V  + +     TE   GD++D + VG+  +R RTLK+KY+R ++L +D
Sbjct:   46 EIGLVLVG--TADTDNRVNREIPEEYRHVTELSMLKKCSLAFLRDVQTLSL---QRTERVDGDVIDGVFVGLTMLRDRTLKRKYVRKLWLFSD 133          
BLAST of mRNA_L-elsbetiae_contig13283.2545.1 vs. uniprot
Match: A0A2D4BWM7_PYTIN (Uncharacterized protein n=1 Tax=Pythium insidiosum TaxID=114742 RepID=A0A2D4BWM7_PYTIN)

HSP 1 Score: 62.0 bits (149), Expect = 1.080e-8
Identity = 39/111 (35.14%), Postives = 63/111 (56.76%), Query Frame = 1
Query:   13 EVGVVLFGLPSTETANKLN-DADNDDYLGVKEYCMLDKGSVKLLRKVAAIDVPDADSTEPAMGDLLDAMVVGMHAIRSRTLKKKYLRHVYLLTDAATPVQEASQLPEIVGM 342
            EVG+VLFG  S ET N LN +    +Y  V     LD  ++ +  ++  +  P  D++     DLLD ++V +  +  RT  KKY R + L+TDAA+P+++A+ +  +V M
Sbjct:  590 EVGIVLFG--SAETKNDLNAEXGESEYTNVYVLSDLDTPTLSMCERLHQLR-PTVDASVKV--DLLDGLIVALDLLYRRTEGKKYDRRLLLITDAASPIEDAADIESVVQM 695          
BLAST of mRNA_L-elsbetiae_contig13283.2545.1 vs. uniprot
Match: A0A3R7A572_9STRA (VWFA domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A3R7A572_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 1.400e-7
Identity = 33/110 (30.00%), Postives = 61/110 (55.45%), Query Frame = 1
Query:   13 EVGVVLFGLPSTETANKLNDADNDDYLGVKEYCMLDKGSVKLLRKVAAIDVPDADSTEPAMGDLLDAMVVGMHAIRSRTLKKKYLRHVYLLTDAATPVQEASQLPEIVGM 342
            EVG+V++G   T+  N+LN  D ++Y  V     +   +  L +++ A++    ++  PA  D+LD ++V +  +  RT  KKY + + ++TDAATP+   S +  +  M
Sbjct:   49 EVGIVMYGTEGTD--NQLNSDDGNNYKNVTVLSSIAPVTFDLAKQLQAMEAASVET--PA--DVLDGIIVALDLVIRRTDNKKYDKRLVVITDAATPINNPSDMEVVCTM 152          
BLAST of mRNA_L-elsbetiae_contig13283.2545.1 vs. uniprot
Match: A0A7S2WB06_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2WB06_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 2.900e-7
Identity = 39/112 (34.82%), Postives = 59/112 (52.68%), Query Frame = 1
Query:    1 SLQTEVGVVLFGLPSTETANKLNDADNDDYLGVKEYCMLDKGSVKLLRKVAAIDVPDADSTEPAMGDLLDAMVVGMHAIRSRTLKKKYLRHVYLLTDAATPVQEASQLPEIV 336
            S Q EVGVVL G   T  +N+L  A   D++ V     LD+ S+ L   +    VP   S+     D++D +V+G+  +  RT+ KKYLR VYL+T A   ++    +  I+
Sbjct:   66 SKQHEVGVVLCGTEGT--SNELAVAGQYDHITV--LAQLDRPSMALTTALETEAVPSEASS-----DIIDGLVIGVLMLSQRTMNKKYLRSVYLVTAAENRIESVGDMDSII 168          
BLAST of mRNA_L-elsbetiae_contig13283.2545.1 vs. uniprot
Match: A0A024TR07_9STRA (VWFA domain-containing protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A024TR07_9STRA)

HSP 1 Score: 57.4 bits (137), Expect = 4.300e-7
Identity = 33/110 (30.00%), Postives = 61/110 (55.45%), Query Frame = 1
Query:   13 EVGVVLFGLPSTETANKLNDADNDDYLGVKEYCMLDKGSVKLLRKVAAIDVPDADSTEPAMGDLLDAMVVGMHAIRSRTLKKKYLRHVYLLTDAATPVQEASQLPEIVGM 342
            EVG+V++G   T+  N+LN  D ++Y  V     +   +  L +++ A++    ++  PA  D+LD ++V +  +  RT  KKY + + ++TDAATP+   S +  +  M
Sbjct:   57 EVGIVMYGTEGTD--NQLNSDDGNNYKNVTVLSSIAPVTFDLAKQLQAMEAASVET--PA--DVLDGIIVALDLVIRRTDNKKYDKRLVVITDAATPINNPSDMEVVCTM 160          
BLAST of mRNA_L-elsbetiae_contig13283.2545.1 vs. uniprot
Match: A0A418AJ28_9STRA (Uncharacterized protein n=1 Tax=Aphanomyces invadans TaxID=157072 RepID=A0A418AJ28_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 1.020e-6
Identity = 33/110 (30.00%), Postives = 61/110 (55.45%), Query Frame = 1
Query:   13 EVGVVLFGLPSTETANKLNDADNDDYLGVKEYCMLDKGSVKLLRKVAAIDVPDADSTEPAMGDLLDAMVVGMHAIRSRTLKKKYLRHVYLLTDAATPVQEASQLPEIVGM 342
            EVG+V++G   T+  N+LN  D ++Y  V     +   S+ L +++ A++    ++  PA  D+LD ++V +  +  RT  KKY + + ++TDAAT +   S +  +  M
Sbjct:   40 EVGIVMYGTEGTD--NQLNSDDGNNYKNVTVLSSITPVSLDLAKQLQAMEAASVET--PA--DVLDGIIVALDLVIRRTDNKKYDKRLVVITDAATRINNPSDMEVVCTM 143          
BLAST of mRNA_L-elsbetiae_contig13283.2545.1 vs. uniprot
Match: A0A397EXU4_9STRA (VWFA domain-containing protein (Fragment) n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=A0A397EXU4_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 4.220e-6
Identity = 33/110 (30.00%), Postives = 61/110 (55.45%), Query Frame = 1
Query:   13 EVGVVLFGLPSTETANKLNDADNDDYLGVKEYCMLDKGSVKLLRKVAAIDVPDADSTEPAMGDLLDAMVVGMHAIRSRTLKKKYLRHVYLLTDAATPVQEASQLPEIVGM 342
            EVG+V++G   T+  N+LN  D++ Y  V     +   ++ L ++V A++    ++  PA  D+LD ++V +  +  RT  KKY + + ++TDAAT +   S +  +  M
Sbjct:   49 EVGIVMYGTEGTD--NQLNADDDNSYKHVTVVSSVAPVTIDLAKQVLAMEAASVET--PA--DVLDGIIVALDLMIRRTDNKKYDKRLVVITDAATRINNPSDMEVVCTM 152          
BLAST of mRNA_L-elsbetiae_contig13283.2545.1 vs. uniprot
Match: W4GEM7_9STRA (VWFA domain-containing protein n=1 Tax=Aphanomyces astaci TaxID=112090 RepID=W4GEM7_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 7.000e-6
Identity = 33/110 (30.00%), Postives = 61/110 (55.45%), Query Frame = 1
Query:   13 EVGVVLFGLPSTETANKLNDADNDDYLGVKEYCMLDKGSVKLLRKVAAIDVPDADSTEPAMGDLLDAMVVGMHAIRSRTLKKKYLRHVYLLTDAATPVQEASQLPEIVGM 342
            EVG+V++G   T+  N+LN  D++ Y  V     +   ++ L ++V A++    ++  PA  D+LD ++V +  +  RT  KKY + + ++TDAAT +   S +  +  M
Sbjct:   57 EVGIVMYGTEGTD--NQLNADDDNSYKHVTVVSSVAPVTIDLAKQVLAMEAASVET--PA--DVLDGIIVALDLMIRRTDNKKYDKRLVVITDAATRINNPSDMEVVCTM 160          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13283.2545.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
A0A6H5JXB1_9PHAE1.700e-5880.49Ku domain-containing protein n=2 Tax=Ectocarpus Ta... [more]
A0A8K1C5B8_PYTOL1.620e-938.39Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A7R9UAZ4_9STRA1.040e-837.63Hypothetical protein n=1 Tax=Pinguiococcus pyrenoi... [more]
A0A2D4BWM7_PYTIN1.080e-835.14Uncharacterized protein n=1 Tax=Pythium insidiosum... [more]
A0A3R7A572_9STRA1.400e-730.00VWFA domain-containing protein n=1 Tax=Aphanomyces... [more]
A0A7S2WB06_9STRA2.900e-734.82Hypothetical protein (Fragment) n=1 Tax=Rhizochrom... [more]
A0A024TR07_9STRA4.300e-730.00VWFA domain-containing protein n=1 Tax=Aphanomyces... [more]
A0A418AJ28_9STRA1.020e-630.00Uncharacterized protein n=1 Tax=Aphanomyces invada... [more]
A0A397EXU4_9STRA4.220e-630.00VWFA domain-containing protein (Fragment) n=1 Tax=... [more]
W4GEM7_9STRA7.000e-630.00VWFA domain-containing protein n=1 Tax=Aphanomyces... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13283contigL-elsbetiae_contig13283:1851..4505 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score191.4
Seed ortholog evalue2.4e-46
Seed eggNOG ortholog2880.D7FY60
Preferred nameYKU80
KEGG koko:K10885
KEGG Pathwayko03450,map03450
KEGG ModuleM00297
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000228,GO:0000723,GO:0000724,GO:0000725,GO:0000726,GO:0000781,GO:0000784,GO:0000785,GO:0000790,GO:0003006,GO:0003674,GO:0003676,GO:0003677,GO:0003690,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005694,GO:0006139,GO:0006259,GO:0006281,GO:0006302,GO:0006303,GO:0006310,GO:0006325,GO:0006333,GO:0006342,GO:0006348,GO:0006355,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0006996,GO:0007530,GO:0007531,GO:0007533,GO:0007535,GO:0008104,GO:0008150,GO:0008152,GO:0009889,GO:0009890,GO:0009892,GO:0009987,GO:0010468,GO:0010556,GO:0010558,GO:0010605,GO:0010629,GO:0016043,GO:0016458,GO:0019219,GO:0019222,GO:0022413,GO:0022414,GO:0030154,GO:0031323,GO:0031324,GO:0031326,GO:0031327,GO:0031503,GO:0031974,GO:0031981,GO:0032200,GO:0032502,GO:0032505,GO:0032991,GO:0033036,GO:0033365,GO:0033554,GO:0034502,GO:0034613,GO:0034641,GO:0040029,GO:0042162,GO:0042592,GO:0043170,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043564,GO:0043565,GO:0044237,GO:0044238,GO:0044260,GO:0044422,GO:0044424,GO:0044427,GO:0044428,GO:0044446,GO:0044454,GO:0044464,GO:0045165,GO:0045814,GO:0045892,GO:0045934,GO:0046483,GO:0048519,GO:0048523,GO:0048869,GO:0050789,GO:0050794,GO:0050896,GO:0051171,GO:0051172,GO:0051179,GO:0051234,GO:0051252,GO:0051253,GO:0051276,GO:0051641,GO:0051716,GO:0060249,GO:0060255,GO:0065007,GO:0065008,GO:0070013,GO:0070727,GO:0071704,GO:0071840,GO:0080090,GO:0090304,GO:0097159,GO:0097695,GO:0098687,GO:1901360,GO:1901363,GO:1902679,GO:1903506,GO:1903507,GO:2000112,GO:2000113,GO:2001141
EggNOG free text desc.double-strand break repair via nonhomologous end joining
EggNOG OGsKOG2326@1,KOG2326@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko03400
Ec32 ortholog descriptionku P80 DNA helicase, putative
Ec32 orthologEc-24_003690.1
Exons3
Model size369
Cds size369
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13283.2545.1prot_L-elsbetiae_contig13283.2545.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13283 1851..4505 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815504.1412873-CDS-L-elsbetiae_contig13283:1850..19631622815504.1412873-CDS-L-elsbetiae_contig13283:1850..1963Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13283 1851..1963 +
1691682930.5413496-CDS-L-elsbetiae_contig13283:1850..19631691682930.5413496-CDS-L-elsbetiae_contig13283:1850..1963Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13283 1851..1963 +
1622815504.1518774-CDS-L-elsbetiae_contig13283:2752..28961622815504.1518774-CDS-L-elsbetiae_contig13283:2752..2896Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13283 2753..2896 +
1691682930.5538263-CDS-L-elsbetiae_contig13283:2752..28961691682930.5538263-CDS-L-elsbetiae_contig13283:2752..2896Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13283 2753..2896 +
1622815504.162797-CDS-L-elsbetiae_contig13283:4393..45051622815504.162797-CDS-L-elsbetiae_contig13283:4393..4505Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13283 4394..4505 +
1691682930.5638008-CDS-L-elsbetiae_contig13283:4393..45051691682930.5638008-CDS-L-elsbetiae_contig13283:4393..4505Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13283 4394..4505 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13283.2545.1

>prot_L-elsbetiae_contig13283.2545.1 ID=prot_L-elsbetiae_contig13283.2545.1|Name=mRNA_L-elsbetiae_contig13283.2545.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=123bp
SLQTEVGVVLFGLPSTETANKLNDADNDDYLGVKEYCMLDKGSVKLLRKV
AAIDVPDADSTEPAMGDLLDAMVVGMHAIRSRTLKKKYLRHVYLLTDAAT
PVQEASQLPEIVGMYTDATMECR
back to top

mRNA from alignment at L-elsbetiae_contig13283:1851..4505+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13283.2545.1 ID=mRNA_L-elsbetiae_contig13283.2545.1|Name=mRNA_L-elsbetiae_contig13283.2545.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2655bp|location=Sequence derived from alignment at L-elsbetiae_contig13283:1851..4505+ (Laminarionema elsbetiae ELsaHSoW15)
TCTCTGCAGACCGAAGTCGGCGTGGTTCTATTCGGCCTCCCTTCAACAGA GACGGCCAACAAGCTCAACGACGCGGACAACGACGACTACCTTGGCGTCA AGGAGTACTGCATGTGAGATAACCAAATTTGTAGACACACACCATACCAT ACCATACCAAACCATACCATACCATACCACGACCAAGTACGTGCATGTAT GGTACCTAGTCACGAAGATATATAAGATGGGACATGTAGACACACACATA TACCATGACGAAGCATGTACACAGTCAGTAGTTGGATGTGCGGTATCTAT TCATGAAGACGGCTACACCGCATGTGGGATATGGAGACGCATACGTGCAC ACCTGCAGTCAGGTAGATGTAAGGTATGCGTCTTCTCATGAAGATGACTA TATACAGATGTAGCAGTGAGACACGTCGTCCATAAATGCGTACCTACATG GTCCGTTGAGGGTGCCAGTGCCGGAAGGGGACGGGTGGCGTTGGAAATAT CCAGTCGAGGGGCTGTCCGAAAATGTGTCGTTTGGTGCTGGCGCCTTCTT CGCTACGGGTTATTTATTGCAATGGAGCTCATAAAGTCGGTCCAGGGGGT GTGGTTTCTTGTGTCACCTTCCCCTGCTGTGCGCGCTGGAGACCCCAGTC ACCTCGTCCCCCGACGATATATCCTCGCCGTGTGTAAAATAGAACGCTGC ACTTGGTCTCCAGACTCGGGGTTGTGTCACACCGAAAAAACAAAAAGAGG CGTTTTCTGCGGCAGGCTCGACAGAAAATAAATTAAAGACGGGCGGCTAT GTATGTATTTATTTCACCTCGCGCCCCCGACTTCGGCGGCAAAAACACGA AATGTAAATTAAAGTTTGGGATTGTCTGTTTGTTTTGGGCTTCGCTTCGC AGGCTCGACAAGGGCAGCGTCAAGCTGCTGCGCAAGGTGGCAGCGATAGA CGTGCCGGACGCGGACAGCACCGAGCCGGCGATGGGCGACCTGCTGGATG CCATGGTGGTCGGGATGCACGCGATCCGCTCCAGGACCCTCAAGAAGTGA GCAGCAGCAGCAGCAGCAGCAGCAGAGAGAGAGAGAGAGAGAGAGAGAGA GAGAGATAGATAGATAGAGAAAGAGAGATAGAGAGAGAAAGAGAGAGATA TGCCTCTTGCCGTGGGCACATTTTTTTGTTCCCCCTTCGCTATTGTTGGT GGCATCATTTTCTCGTGCATTTCTGTAGGTACATAATGCAATGGTGCGTC GTTCGAATTGTTTTTTTGTATCTCACGGTGCGTGTAACCGTGCCGTGGGC ACATTTTTTTTGTTCTCCCTTCGCTATTGTTGGTGGCATCATTTTATCGT GTATTTCTGTAGGTACATAATGCAATGGTGCGTCGTTCGAATTGTTTTTT TGTATCTCACGGTGCGGTGTAACCGTGAAAAAAAGCCGCATCGTACAGAG CCCCCGGTTGTTTTCATGTCTTTAAATCGAATCGCACCTGTCGCCCCACG TGTGTTTAAAAATATGCAATGAATCAAAGATGGAACCTAACCCACACCAG AGCAAGGACTCGATATGGGATTCAAACGGTATTCCATACAGAGACGTGTT TACCGGATCCCTAATCTCACGGTTTTTCGCGGTTGCGGTGAACCGGTTGT TCGAAATCTCACGGTGCGGTGCGTTTTTTTTTAGAACCGCACCGCGGGTG CGGTGTAACCGTGAAAAAACCCGCACCGTACAGAGCGCCCGGTTGTTTTC ATGTCTTAACCCTTTTAGAACCCGCCTATAATCTGGCCGCCTGTGATTGG CTAAAGAGCCACGGTCCCTTCTAGAACCCATCTGCGGGCCCCGCGTTCTT CCCCGGGCTGGCCGGACCCGCCAGCAGAGTGTCTGGGGTGAAACAAGAGG GTGCATCGCTATCCCACAGATGCAGGAGGAACGTAAACCATGGTTACACA AGCTTCCGTGGACACAACAGAGAGAACATCGAAAACAAAAAAATGGCGAC AGTTTCCGTACTCAAGGCCAAATCAAACTTTTGGCGACACTTTCTATACT GAAAGCCAAGATACACTTTTTTCCAGACCTTGGCTACACAGAAGTTCTCC CTCTAAGGGGAAAAGCGTTGATACCTGGCCTGTCGCCAAATTGTCGCCAT ATGGCCATCCAGGTCTAAAAGGGTTAAATCAAGTTGTAACCTGTCGCCCC ACGTGTACCTACCGGATCCCTAATTTACCGTAATAACCCCTGAGAACGCC CCGCCCCGGGGTGTACAATTAACAGTTTTCAAAGCCGATTTTCTCCGTAA TGGGTGGTGTTTGAAAGATAAATCAGATAATCAAAAACGGAACCTAGCCC ACACTTGAGATGGATTCCGTGGGGGTCAACCGGTATTATTCCATATAAAT AGTGACGTAATGTTGGTCCGGCCGAGTAGAAAAACACCTAAAATTTCCGA AGAATTTAACGTCTCCCTTGTGCAGATTTCTGCTTGATCAAACCGACATG CTTTGTTTTTTTCTGTTGCTGCCCGGGGCCGTCGTCGTCGCAGGAAGTAC CTCCGGCACGTGTACCTGCTCACAGACGCCGCCACGCCGGTGCAGGAGGC CTCGCAGCTGCCCGAGATCGTCGGCATGTACACGGACGCCACCATGGAGT GCAGG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig13283:1851..4505+

>mRNA_L-elsbetiae_contig13283.2545.1 ID=mRNA_L-elsbetiae_contig13283.2545.1|Name=mRNA_L-elsbetiae_contig13283.2545.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=738bp|location=Sequence derived from alignment at L-elsbetiae_contig13283:1851..4505+ (Laminarionema elsbetiae ELsaHSoW15)
TCTCTGCAGACCGAAGTCGGCGTGGTTCTATTCGGCCTCCCTTCAACAGA
GACGGCCAACAAGCTCAACGACGCGGACAACGACGACTACCTTGGCGTCA
AGGAGTACTGCATTCTCTGCAGACCGAAGTCGGCGTGGTTCTATTCGGCC
TCCCTTCAACAGAGACGGCCAACAAGCTCAACGACGCGGACAACGACGAC
TACCTTGGCGTCAAGGAGTACTGCATGCTCGACAAGGGCAGCGTCAAGCT
GCTGCGCAAGGTGGCAGCGATAGACGTGCCGGACGCGGACAGCACCGAGC
CGGCGATGGGCGACCTGCTGGATGCCATGGTGGTCGGGATGCACGCGATC
CGCTCCAGGACCCTCAAGAAGCTCGACAAGGGCAGCGTCAAGCTGCTGCG
CAAGGTGGCAGCGATAGACGTGCCGGACGCGGACAGCACCGAGCCGGCGA
TGGGCGACCTGCTGGATGCCATGGTGGTCGGGATGCACGCGATCCGCTCC
AGGACCCTCAAGAAGAAGTACCTCCGGCACGTGTACCTGCTCACAGACGC
CGCCACGCCGGTGCAGGAGGCCTCGCAGCTGCCCGAGATCGTCGGCATGT
ACACGGACGCCACCATGGAGTGCAGGGAAGTACCTCCGGCACGTGTACCT
GCTCACAGACGCCGCCACGCCGGTGCAGGAGGCCTCGCAGCTGCCCGAGA
TCGTCGGCATGTACACGGACGCCACCATGGAGTGCAGG
back to top