mRNA_L-elsbetiae_contig13181.2488.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig13181.2488.1
Unique NamemRNA_L-elsbetiae_contig13181.2488.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig13181.2488.1 vs. uniprot
Match: D7G0A1_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G0A1_ECTSI)

HSP 1 Score: 137 bits (346), Expect = 3.210e-36
Identity = 60/69 (86.96%), Postives = 65/69 (94.20%), Query Frame = 1
Query:    1 PKQGGCFEFDILLPPDYPNKPPEVHFLTTGNGRVRFNPNLYKTGKVCLSLLGTWSGPGWNAKTSTLLQV 207
            P + GCFEFDILLPPDYPN PP+VHFLTTG+GRVRFNPNLY+TGKVCLSLLGTW+GPGWN KTSTLLQV
Sbjct:  757 PYECGCFEFDILLPPDYPNSPPKVHFLTTGSGRVRFNPNLYQTGKVCLSLLGTWAGPGWNPKTSTLLQV 825          
BLAST of mRNA_L-elsbetiae_contig13181.2488.1 vs. uniprot
Match: I0YLH9_COCSC (UBC-like protein (Fragment) n=1 Tax=Coccomyxa subellipsoidea (strain C-169) TaxID=574566 RepID=I0YLH9_COCSC)

HSP 1 Score: 124 bits (310), Expect = 1.710e-34
Identity = 56/69 (81.16%), Postives = 58/69 (84.06%), Query Frame = 1
Query:    1 PKQGGCFEFDILLPPDYPNKPPEVHFLTTGNGRVRFNPNLYKTGKVCLSLLGTWSGPGWNAKTSTLLQV 207
            P   GCF FDILLPP+YPNKPPEV FLTTG GRVRFNPNLY  GKVCLSLLGTWSGP W+  TSTLLQV
Sbjct:   11 PYANGCFLFDILLPPEYPNKPPEVQFLTTGAGRVRFNPNLYNCGKVCLSLLGTWSGPSWDPGTSTLLQV 79          
BLAST of mRNA_L-elsbetiae_contig13181.2488.1 vs. uniprot
Match: A0A7R9W000_9CHLO (Hypothetical protein n=1 Tax=Chlamydomonas euryale TaxID=1486919 RepID=A0A7R9W000_9CHLO)

HSP 1 Score: 121 bits (303), Expect = 4.870e-32
Identity = 54/65 (83.08%), Postives = 55/65 (84.62%), Query Frame = 1
Query:   13 GCFEFDILLPPDYPNKPPEVHFLTTGNGRVRFNPNLYKTGKVCLSLLGTWSGPGWNAKTSTLLQV 207
            G F FDILLPPDYPN PP+VHFLTTG GRVRFNPNLY  GKVCLSLLGTWSGP W   TSTLLQV
Sbjct:  111 GAFVFDILLPPDYPNHPPQVHFLTTGEGRVRFNPNLYNCGKVCLSLLGTWSGPSWQPGTSTLLQV 175          
BLAST of mRNA_L-elsbetiae_contig13181.2488.1 vs. uniprot
Match: A0A7S0N848_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Cryptomonas curvata TaxID=233186 RepID=A0A7S0N848_9CRYP)

HSP 1 Score: 112 bits (280), Expect = 5.560e-30
Identity = 50/69 (72.46%), Postives = 53/69 (76.81%), Query Frame = 1
Query:    1 PKQGGCFEFDILLPPDYPNKPPEVHFLTTGNGRVRFNPNLYKTGKVCLSLLGTWSGPGWNAKTSTLLQV 207
            P   G FEFD+LLPPDYPN PP+V   TTG GRVRFNPNLY  G VCLSLLGTWSGPGW    S+LLQV
Sbjct:   27 PYANGLFEFDVLLPPDYPNVPPQVRLTTTGGGRVRFNPNLYADGTVCLSLLGTWSGPGWEPGRSSLLQV 95          
BLAST of mRNA_L-elsbetiae_contig13181.2488.1 vs. uniprot
Match: A0A835YXY9_9STRA (Ubiquitin-conjugating enzyme/RWD-like protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YXY9_9STRA)

HSP 1 Score: 108 bits (271), Expect = 3.350e-29
Identity = 50/65 (76.92%), Postives = 51/65 (78.46%), Query Frame = 1
Query:   13 GCFEFDILLPPDYPNKPPEVHFLTTGNGRVRFNPNLYKTGKVCLSLLGTWSGPGWNAKTSTLLQV 207
            G FEFDI LP  YP   PEVHFLTTGNG VRFNPNLY +GKVCLSLLGTW GPGW    STLLQV
Sbjct:    2 GLFEFDIRLPQRYPVVAPEVHFLTTGNGSVRFNPNLYNSGKVCLSLLGTWRGPGWEPNKSTLLQV 66          
BLAST of mRNA_L-elsbetiae_contig13181.2488.1 vs. uniprot
Match: A0A2R6WNY5_MARPO (Uncharacterized protein n=1 Tax=Marchantia polymorpha TaxID=3197 RepID=A0A2R6WNY5_MARPO)

HSP 1 Score: 117 bits (292), Expect = 6.270e-29
Identity = 52/69 (75.36%), Postives = 55/69 (79.71%), Query Frame = 1
Query:    1 PKQGGCFEFDILLPPDYPNKPPEVHFLTTGNGRVRFNPNLYKTGKVCLSLLGTWSGPGWNAKTSTLLQV 207
            P Q G F FDI LPPDYP  PP VHFLTTG G+VRFNPNLY +GK+CLSLLGTWSGPGW    STLLQV
Sbjct:  696 PYQNGLFMFDIFLPPDYPQVPPHVHFLTTGGGKVRFNPNLYDSGKICLSLLGTWSGPGWVPGKSTLLQV 764          
BLAST of mRNA_L-elsbetiae_contig13181.2488.1 vs. uniprot
Match: A0A5J4YG42_9CHLO (UBC core domain-containing protein n=1 Tax=Trebouxia sp. A1-2 TaxID=2608996 RepID=A0A5J4YG42_9CHLO)

HSP 1 Score: 116 bits (290), Expect = 8.410e-29
Identity = 51/69 (73.91%), Postives = 55/69 (79.71%), Query Frame = 1
Query:    1 PKQGGCFEFDILLPPDYPNKPPEVHFLTTGNGRVRFNPNLYKTGKVCLSLLGTWSGPGWNAKTSTLLQV 207
            P   GCF FDI LP +YPN PP VHFLTTG GR+RFNPNLY+ GKVCLSLLGTWSGP W+   STLLQV
Sbjct:  386 PYANGCFLFDIFLPANYPNAPPSVHFLTTGGGRIRFNPNLYECGKVCLSLLGTWSGPSWDPTHSTLLQV 454          
BLAST of mRNA_L-elsbetiae_contig13181.2488.1 vs. uniprot
Match: A0A2K1JHY5_PHYPA (Uncharacterized protein n=3 Tax=Physcomitrium patens TaxID=3218 RepID=A0A2K1JHY5_PHYPA)

HSP 1 Score: 116 bits (290), Expect = 1.170e-28
Identity = 52/69 (75.36%), Postives = 54/69 (78.26%), Query Frame = 1
Query:    1 PKQGGCFEFDILLPPDYPNKPPEVHFLTTGNGRVRFNPNLYKTGKVCLSLLGTWSGPGWNAKTSTLLQV 207
            P Q G F FDI LP DYP  PP VHFLTTG G+VRFNPNLY TGK+CLSLLGTWSGPGW    STLLQV
Sbjct:  699 PYQNGIFLFDIFLPADYPQVPPSVHFLTTGGGKVRFNPNLYDTGKICLSLLGTWSGPGWTPGKSTLLQV 767          
BLAST of mRNA_L-elsbetiae_contig13181.2488.1 vs. uniprot
Match: A0A2P6TCN2_CHLSO (Ubiquitin conjugating enzyme family n=1 Tax=Chlorella sorokiniana TaxID=3076 RepID=A0A2P6TCN2_CHLSO)

HSP 1 Score: 114 bits (286), Expect = 3.910e-28
Identity = 50/65 (76.92%), Postives = 54/65 (83.08%), Query Frame = 1
Query:   13 GCFEFDILLPPDYPNKPPEVHFLTTGNGRVRFNPNLYKTGKVCLSLLGTWSGPGWNAKTSTLLQV 207
            G F FDILLPPDYPN+PP+V FLTTG GRVR NPNLY+ GKVCLSLLGTW+GP W    STLLQV
Sbjct:  528 GAFAFDILLPPDYPNRPPQVQFLTTGGGRVRLNPNLYENGKVCLSLLGTWAGPSWQPGQSTLLQV 592          
BLAST of mRNA_L-elsbetiae_contig13181.2488.1 vs. uniprot
Match: A0A7S1ZIC0_TRICV (Hypothetical protein n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1ZIC0_TRICV)

HSP 1 Score: 113 bits (283), Expect = 4.900e-28
Identity = 50/69 (72.46%), Postives = 55/69 (79.71%), Query Frame = 1
Query:    1 PKQGGCFEFDILLPPDYPNKPPEVHFLTTGNGRVRFNPNLYKTGKVCLSLLGTWSGPGWNAKTSTLLQV 207
            P + G FEFDI LP  YPN PP+VH +TTG   VRFNPNLY+ GKVCLSLLGTWSGPGW  +TSTLLQV
Sbjct:  274 PYENGVFEFDIFLPESYPNDPPKVHLITTGKNTVRFNPNLYQEGKVCLSLLGTWSGPGWIPETSTLLQV 342          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig13181.2488.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G0A1_ECTSI3.210e-3686.96Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
I0YLH9_COCSC1.710e-3481.16UBC-like protein (Fragment) n=1 Tax=Coccomyxa sube... [more]
A0A7R9W000_9CHLO4.870e-3283.08Hypothetical protein n=1 Tax=Chlamydomonas euryale... [more]
A0A7S0N848_9CRYP5.560e-3072.46Hypothetical protein (Fragment) n=1 Tax=Cryptomona... [more]
A0A835YXY9_9STRA3.350e-2976.92Ubiquitin-conjugating enzyme/RWD-like protein (Fra... [more]
A0A2R6WNY5_MARPO6.270e-2975.36Uncharacterized protein n=1 Tax=Marchantia polymor... [more]
A0A5J4YG42_9CHLO8.410e-2973.91UBC core domain-containing protein n=1 Tax=Treboux... [more]
A0A2K1JHY5_PHYPA1.170e-2875.36Uncharacterized protein n=3 Tax=Physcomitrium pate... [more]
A0A2P6TCN2_CHLSO3.910e-2876.92Ubiquitin conjugating enzyme family n=1 Tax=Chlore... [more]
A0A7S1ZIC0_TRICV4.900e-2872.46Hypothetical protein n=1 Tax=Trieres chinensis Tax... [more]

Pages

back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig13181contigL-elsbetiae_contig13181:4871..5077 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score137.5
Seed ortholog evalue2.4e-30
Seed eggNOG ortholog2880.D7G0A1
KEGG koko:K03178,ko:K10586,ko:K10699
KEGG Pathwayko04120,ko04214,ko04215,ko05012,map04120,map04214,map04215,map05012
Hectar predicted targeting categoryother localisation
EggNOG free text desc.protein modification by small protein conjugation
EggNOG OGsCOG5078@1,KOG0895@2759
Ec32 ortholog descriptionUbiquitin-conjugating enzyme E2
Ec32 orthologEc-14_005080.1
EC2.3.2.23,6.2.1.45
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko04121,ko04147
Exons1
Model size207
Cds size207
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815496.5289404-CDS-L-elsbetiae_contig13181:4870..50771622815496.5289404-CDS-L-elsbetiae_contig13181:4870..5077Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13181 4871..5077 +
1691682926.8422453-CDS-L-elsbetiae_contig13181:4870..50771691682926.8422453-CDS-L-elsbetiae_contig13181:4870..5077Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig13181 4871..5077 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig13181.2488.1prot_L-elsbetiae_contig13181.2488.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig13181 4871..5077 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig13181.2488.1

>prot_L-elsbetiae_contig13181.2488.1 ID=prot_L-elsbetiae_contig13181.2488.1|Name=mRNA_L-elsbetiae_contig13181.2488.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=69bp
PKQGGCFEFDILLPPDYPNKPPEVHFLTTGNGRVRFNPNLYKTGKVCLSL
LGTWSGPGWNAKTSTLLQV
back to top

mRNA from alignment at L-elsbetiae_contig13181:4871..5077+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig13181.2488.1 ID=mRNA_L-elsbetiae_contig13181.2488.1|Name=mRNA_L-elsbetiae_contig13181.2488.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=207bp|location=Sequence derived from alignment at L-elsbetiae_contig13181:4871..5077+ (Laminarionema elsbetiae ELsaHSoW15)
CCGAAGCAGGGAGGCTGCTTCGAGTTCGACATCTTGCTGCCCCCCGACTA CCCCAACAAGCCGCCGGAAGTGCACTTCCTCACCACCGGCAACGGGCGAG TGCGGTTCAACCCGAACCTGTACAAGACCGGCAAGGTTTGCCTGTCGCTG CTGGGGACGTGGTCCGGCCCCGGGTGGAACGCCAAGACGAGCACGCTGCT ACAGGTA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig13181:4871..5077+

>mRNA_L-elsbetiae_contig13181.2488.1 ID=mRNA_L-elsbetiae_contig13181.2488.1|Name=mRNA_L-elsbetiae_contig13181.2488.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=414bp|location=Sequence derived from alignment at L-elsbetiae_contig13181:4871..5077+ (Laminarionema elsbetiae ELsaHSoW15)
CCGAAGCAGGGAGGCTGCTTCGAGTTCGACATCTTGCTGCCCCCCGACTA
CCCCAACAAGCCGCCGGAAGTGCACTTCCTCACCACCGGCAACGGGCGAG
TGCGGTTCAACCCGAACCTGTACAAGACCGGCAAGGTTTGCCTGTCGCTG
CTGGGGACGTGGTCCGGCCCCGGGTGGAACGCCAAGACGAGCACGCTGCT
ACAGGTACCGAAGCAGGGAGGCTGCTTCGAGTTCGACATCTTGCTGCCCC
CCGACTACCCCAACAAGCCGCCGGAAGTGCACTTCCTCACCACCGGCAAC
GGGCGAGTGCGGTTCAACCCGAACCTGTACAAGACCGGCAAGGTTTGCCT
GTCGCTGCTGGGGACGTGGTCCGGCCCCGGGTGGAACGCCAAGACGAGCA
CGCTGCTACAGGTA
back to top