mRNA_L-elsbetiae_contig1302.2396.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1302.2396.1
Unique NamemRNA_L-elsbetiae_contig1302.2396.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig1302.2396.1 vs. uniprot
Match: A0A6H5KD01_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KD01_9PHAE)

HSP 1 Score: 142 bits (359), Expect = 1.280e-35
Identity = 74/93 (79.57%), Postives = 81/93 (87.10%), Query Frame = 2
Query:  242 AAAAADRLQRESLNQRLAMTERRFLSDEGLPGRQWFRHVLQAPGLYLGYAAESFPGITQALSDGDLSLAQQQVHVAAACVSDAAAFLAGEEGK 520
            AA AA  L+   LN+RLAMTERRFL DEGLPGRQWFRHVLQAPGLYLGYAAESFPGITQALSDGDL LA++QVHVAAA + DAA FL G+EG+
Sbjct:  695 AAEAAHWLEVADLNERLAMTERRFLVDEGLPGRQWFRHVLQAPGLYLGYAAESFPGITQALSDGDLELAKEQVHVAAARIEDAATFLTGDEGR 787          
BLAST of mRNA_L-elsbetiae_contig1302.2396.1 vs. uniprot
Match: A0A7S2BCC7_9STRA (Hypothetical protein n=1 Tax=Florenciella parvula TaxID=236787 RepID=A0A7S2BCC7_9STRA)

HSP 1 Score: 118 bits (295), Expect = 4.410e-30
Identity = 55/79 (69.62%), Postives = 68/79 (86.08%), Query Frame = 2
Query:  275 SLNQRLAMTERRFLSDEGLPGRQWFRHVLQAPGLYLGYAAESFPGITQALSDGDLSLAQQQVHVAAACVSDAAAFLAGE 511
            +LN+RL++TERRFL+++GLP RQWF+HVLQAPG+YLGYAAE FPG++QAL DGD   AQ QV VAA CV+DAA +L GE
Sbjct:   81 ALNERLSLTERRFLAEDGLPSRQWFKHVLQAPGMYLGYAAEPFPGVSQALDDGDADAAQAQVAVAAICVTDAAQYLVGE 159          
BLAST of mRNA_L-elsbetiae_contig1302.2396.1 vs. uniprot
Match: W7TMG7_9STRA (Glutamate carboxypeptidase n=4 Tax=Monodopsidaceae TaxID=425072 RepID=W7TMG7_9STRA)

HSP 1 Score: 110 bits (275), Expect = 2.390e-24
Identity = 61/96 (63.54%), Postives = 71/96 (73.96%), Query Frame = 2
Query:  275 SLNQRLAMTERRFLSDEGLPGRQWFRHVLQAPGLYLGYAAESFPGITQALSDGDLSLAQQQVHVAAACVSDAAAFLAGEEGKGA*PMSRGRRGENI 562
            +LN RLA TERRF + EGLP R+WF+HVLQAPGLYLGYA  SFPG+TQALSDGD  LAQ+QV VAA  V  AAA+LA  + +G      GR GE +
Sbjct:  653 ALNDRLAFTERRFCAKEGLPRRKWFKHVLQAPGLYLGYAGVSFPGVTQALSDGDWELAQRQVWVAAERVGTAAAYLAWGDREG------GRGGEGV 742          
BLAST of mRNA_L-elsbetiae_contig1302.2396.1 vs. uniprot
Match: A0A7R9ZMT0_9STRA (Hypothetical protein n=1 Tax=Craspedostauros australis TaxID=1486917 RepID=A0A7R9ZMT0_9STRA)

HSP 1 Score: 92.4 bits (228), Expect = 7.690e-20
Identity = 48/78 (61.54%), Postives = 58/78 (74.36%), Query Frame = 2
Query:  272 ESLNQRLAMTERRFL-SDEGLPGRQWFRHVLQAPGLYLGYAAESFPGITQALSDGDLSLAQQQVHVAAACVSDAAAFL 502
            +  N+++ M ER FL  D GLP R WF+HVLQAPG++LGYAAE+FPGI QAL DGD  LA+QQV VAA  V  AA F+
Sbjct:  104 DECNEKITMVEREFLIPDGGLPRRPWFKHVLQAPGMHLGYAAEAFPGIQQALDDGDWDLAKQQVKVAADRVQAAADFM 181          
BLAST of mRNA_L-elsbetiae_contig1302.2396.1 vs. uniprot
Match: A0A7S0Y887_9STRA (Hypothetical protein n=1 Tax=Pseudo-nitzschia delicatissima TaxID=44447 RepID=A0A7S0Y887_9STRA)

HSP 1 Score: 89.0 bits (219), Expect = 3.770e-18
Identity = 51/99 (51.52%), Postives = 65/99 (65.66%), Query Frame = 2
Query:  206 EGKTLPRAELPAAAAAADRLQRESLNQRLAMTERRFLSDEGLPGRQWFRHVLQAPGLYLGYAAESFPGITQALSDGDLSLAQQQVHVAAACVSDAAAFL 502
            E   L +++ P  +A+  + Q E  N++L +TER FL D+GLPGR WFRH LQAPGL LGYAAESFPGI QAL +    LAQ Q+  A   ++ AA  L
Sbjct:  120 ESAELAKSKSPLDSASELKEQVEICNEKLGLTERFFLLDDGLPGRPWFRHCLQAPGLDLGYAAESFPGIQQALDESRYVLAQDQIDKATERIAAAAENL 218          
BLAST of mRNA_L-elsbetiae_contig1302.2396.1 vs. uniprot
Match: A0A7S1GXP9_HEMAN (Hypothetical protein n=2 Tax=Hemiselmis andersenii TaxID=464988 RepID=A0A7S1GXP9_HEMAN)

HSP 1 Score: 86.3 bits (212), Expect = 9.130e-18
Identity = 45/77 (58.44%), Postives = 52/77 (67.53%), Query Frame = 2
Query:  272 ESLNQRLAMTERRFLSDEGLPGRQWFRHVLQAPGLYLGYAAESFPGITQALSDGDLSLAQQQVHVAAACVSDAAAFL 502
            ++LN  L   ER FLS EGLPGR+WF HVLQAP LY+GY A+ +PGI QA+ DGD  LA  QV V A  V  A A L
Sbjct:   52 KALNDALYTMERGFLSHEGLPGRKWFLHVLQAPALYMGYGADPYPGIAQAMRDGDWDLASDQVKVVADRVLAAEALL 128          
BLAST of mRNA_L-elsbetiae_contig1302.2396.1 vs. uniprot
Match: L1J998_GUITC (Uncharacterized protein n=1 Tax=Guillardia theta (strain CCMP2712) TaxID=905079 RepID=L1J998_GUITC)

HSP 1 Score: 91.3 bits (225), Expect = 1.100e-17
Identity = 44/75 (58.67%), Postives = 53/75 (70.67%), Query Frame = 2
Query:  278 LNQRLAMTERRFLSDEGLPGRQWFRHVLQAPGLYLGYAAESFPGITQALSDGDLSLAQQQVHVAAACVSDAAAFL 502
            LN+ +  TER FL   GLPGR+WFRH+LQAPGLYLGY A+ FPGI QA+ DGD  LAQ+Q    A  V  A++ L
Sbjct:  658 LNEAMRRTERAFLDPAGLPGRKWFRHILQAPGLYLGYGADMFPGICQAIRDGDAKLAQEQATRCAGVVKHASSVL 732          
BLAST of mRNA_L-elsbetiae_contig1302.2396.1 vs. uniprot
Match: A0A7S0GWE9_9EUKA (Hypothetical protein n=1 Tax=Amorphochlora amoebiformis TaxID=1561963 RepID=A0A7S0GWE9_9EUKA)

HSP 1 Score: 90.5 bits (223), Expect = 2.010e-17
Identity = 49/93 (52.69%), Postives = 64/93 (68.82%), Query Frame = 2
Query:  230 ELPAAAAAADRLQRESLNQRLAMTERRFLSDEGLPGRQWFRHVLQAPGLYLGYAAESFPGITQALSDGDLSLAQQQVHVAAACVSDAAAFLAG 508
            E+ A +  A  +   +L+ RLA TERRFLS+ GLP R+WF+HVLQAPGLY GY ++ FPG+   L + +   A QQV VAA  VS AAA+L+G
Sbjct:  622 EIAARSVGAYDIDHHTLDDRLAFTERRFLSESGLPHRKWFKHVLQAPGLYKGYGSDVFPGVIHELREKNFDGAFQQVKVAAKRVSAAAAYLSG 714          
BLAST of mRNA_L-elsbetiae_contig1302.2396.1 vs. uniprot
Match: A0A7S4UYA3_9DINO (Hypothetical protein (Fragment) n=1 Tax=Alexandrium monilatum TaxID=311494 RepID=A0A7S4UYA3_9DINO)

HSP 1 Score: 80.9 bits (198), Expect = 6.400e-16
Identity = 50/98 (51.02%), Postives = 61/98 (62.24%), Query Frame = 2
Query:  224 RAELPAAAAAADRLQRES---LNQRLAMTERRFLSDEGLPGRQWFRHVLQAPGLYLGYAAESFPGITQALSDGDLSLAQQQVHVAAACVSDAAAFLAG 508
            +AEL AAAA     ++E+   LN RLA+TER FL  EGLPGR+WFRH LQAP    GYA +  P + +AL D D   A   +   AA VS A+AFL G
Sbjct:   18 QAELEAAAAMLSPGRQEAVAALNDRLALTERLFLLPEGLPGRKWFRHALQAPANDRGYAFQKLPAVAEALRDCDREAAVAGLEATAAAVSRASAFLGG 115          
BLAST of mRNA_L-elsbetiae_contig1302.2396.1 vs. uniprot
Match: A0A812TNU8_SYMPI (LAMP1 protein n=1 Tax=Symbiodinium pilosum TaxID=2952 RepID=A0A812TNU8_SYMPI)

HSP 1 Score: 85.1 bits (209), Expect = 1.460e-15
Identity = 46/96 (47.92%), Postives = 61/96 (63.54%), Query Frame = 2
Query:  242 AAAAADRLQR---------ESLNQRLAMTERRFLSDEGLPGRQWFRHVLQAPGLYLGYAAESFPGITQALSDGDLSLAQQQVHVAAACVSDAAAFL 502
            A+A ADRL+R          + N R+ + ER FL + GLPGR+WFRH LQAPGLY GY A++FPGI +A+S  +  LAQ Q+   A  +  AAA +
Sbjct:  614 ASAEADRLRRLGPSAFHEVVAFNNRIGLLERSFLMESGLPGRKWFRHCLQAPGLYTGYGAKTFPGINEAISAEEWDLAQSQIKACAQRIEAAAASI 709          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1302.2396.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KD01_9PHAE1.280e-3579.57Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2BCC7_9STRA4.410e-3069.62Hypothetical protein n=1 Tax=Florenciella parvula ... [more]
W7TMG7_9STRA2.390e-2463.54Glutamate carboxypeptidase n=4 Tax=Monodopsidaceae... [more]
A0A7R9ZMT0_9STRA7.690e-2061.54Hypothetical protein n=1 Tax=Craspedostauros austr... [more]
A0A7S0Y887_9STRA3.770e-1851.52Hypothetical protein n=1 Tax=Pseudo-nitzschia deli... [more]
A0A7S1GXP9_HEMAN9.130e-1858.44Hypothetical protein n=2 Tax=Hemiselmis andersenii... [more]
L1J998_GUITC1.100e-1758.67Uncharacterized protein n=1 Tax=Guillardia theta (... [more]
A0A7S0GWE9_9EUKA2.010e-1752.69Hypothetical protein n=1 Tax=Amorphochlora amoebif... [more]
A0A7S4UYA3_9DINO6.400e-1651.02Hypothetical protein (Fragment) n=1 Tax=Alexandriu... [more]
A0A812TNU8_SYMPI1.460e-1547.92LAMP1 protein n=1 Tax=Symbiodinium pilosum TaxID=2... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1302contigL-elsbetiae_contig1302:2321..3635 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score134.0
Seed ortholog evalue2.9e-29
Seed eggNOG ortholog2880.D7FIJ9
KEGG koko:K01301
Hectar predicted targeting categoryother localisation
EggNOG free text desc.exopeptidase activity
EggNOG OGsCOG2234@1,KOG2195@2759
EC3.4.17.21
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002
Ec32 ortholog descriptionpoly(L-malate)-hydrolase precursor
Ec32 orthologEc-27_000030.1
Exons2
Model size646
Cds size234
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1302.2396.1prot_L-elsbetiae_contig1302.2396.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1302 2616..3518 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815485.1203532-UTR-L-elsbetiae_contig1302:2320..26151622815485.1203532-UTR-L-elsbetiae_contig1302:2320..2615Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1302 2321..2615 +
1691682920.9788404-UTR-L-elsbetiae_contig1302:2320..26151691682920.9788404-UTR-L-elsbetiae_contig1302:2320..2615Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1302 2321..2615 +
1622815485.1617966-UTR-L-elsbetiae_contig1302:3518..36351622815485.1617966-UTR-L-elsbetiae_contig1302:3518..3635Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1302 3519..3635 +
1691682921.007418-UTR-L-elsbetiae_contig1302:3518..36351691682921.007418-UTR-L-elsbetiae_contig1302:3518..3635Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1302 3519..3635 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815485.13572-CDS-L-elsbetiae_contig1302:2615..27041622815485.13572-CDS-L-elsbetiae_contig1302:2615..2704Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1302 2616..2704 +
1691682920.9894848-CDS-L-elsbetiae_contig1302:2615..27041691682920.9894848-CDS-L-elsbetiae_contig1302:2615..2704Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1302 2616..2704 +
1622815485.1503806-CDS-L-elsbetiae_contig1302:3373..35181622815485.1503806-CDS-L-elsbetiae_contig1302:3373..3518Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1302 3374..3518 +
1691682920.9983318-CDS-L-elsbetiae_contig1302:3373..35181691682920.9983318-CDS-L-elsbetiae_contig1302:3373..3518Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1302 3374..3518 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1302.2396.1

>prot_L-elsbetiae_contig1302.2396.1 ID=prot_L-elsbetiae_contig1302.2396.1|Name=mRNA_L-elsbetiae_contig1302.2396.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=78bp
MTERRFLSDEGLPGRQWFRHVLQAPGLYLGYAAESFPGITQALSDGDLSL
AQQQVHVAAACVSDAAAFLAGEEGKGA*
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mRNA from alignment at L-elsbetiae_contig1302:2321..3635+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1302.2396.1 ID=mRNA_L-elsbetiae_contig1302.2396.1|Name=mRNA_L-elsbetiae_contig1302.2396.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1315bp|location=Sequence derived from alignment at L-elsbetiae_contig1302:2321..3635+ (Laminarionema elsbetiae ELsaHSoW15)
TAACGGTTGCGGCGGCGGCAGTGGCAGAGGCAGTGGCAGTGGCGGCGGCG GCGGGGCTCGGGGGAGGGGTTCCGAAGGGCTTTCGACGACGGCGGTGGCT GCTGCTGCGAGGGCGGTTGCTCTTCGCGGGGCGGAGGCAGGAGCGGCAGG CGAAAGCGGAGGCCCGTGGGAGGGTGACAGCAGCGCCAGCGGCGGCGGCA CGGGCGAGGGGAAGACCCTCCCGAGAGCAGAGCTGCCGGCGGCGGCGGCG GCGGCTGATCGGCTCCAGAGGGAGTCGCTCAACCAGCGGTTGGCGATGAC GGAGCGGAGGTTTCTGTCGGACGAGGGGCTGCCGGGGAGGCAGTGGTTCC GCCACGTTCTGCAGGCGCCGGGGCTGTACTTGGGGTGAGCGGGAAAGCGC CGGTGGTTTCGCCCCCCGGTCTATGTGGGCTGGAGGTAGAAAAGTGGATT ACGTACCGTAGGTGACATAAGATACCACCCTCCATGTAGTTACTCCATAA CGAAGAGGGGTGCCAGCACCAGACGACATATTTTCGGATAGCCCTCGACT ACATCTTTCCAACGCCACCCCCTTTCGGCACTTGCACTTTTGTTCTTGCT GGGGAGGAATCAATTTCCCAAAAATGTCCAGGGGGGGTGGTATCTTGTGT CAACTACGGTATGTAGGCTGTATTTAGGTTTTACGTGTTTTTGCCCGCAT TTTTGTGTGGCCCAGGGCAGTAAAATTAATCCCTTGTTGGATGCGAAGCG ACGGTTTTCGTAACGTGAGGGACGGTGCCTTTTACAGGCTGGTTTACAGG CTGGTGAGCCTACGCACCTTCTACAAACCCATTTTGGTATATACCTACAT CCTTAGGGTTAGGGTTACAAGAAACAAATAATATAGAAGTCATACCTACA CATATTAGCCGAAATAAGCAGCGAAAACTATTCATAGTCAGTCCCAGCGC GCCTGCAACCATATGTAATTCACAAATGCCACTACTTTGTGTACCCGCGT GCGTGTATTCTCGTATTTTCCGTCTGATCGTTCATCCCCCGTGTGTCCTG CAGGTACGCCGCCGAGTCTTTCCCTGGCATCACCCAGGCTCTAAGCGACG GCGACCTCAGCCTCGCCCAGCAGCAGGTGCACGTCGCGGCGGCCTGCGTC AGCGACGCCGCCGCCTTCCTCGCGGGCGAAGAAGGGAAAGGAGCATGACC GATGTCACGGGGTCGGCGAGGAGAGAACATATGAAGAAAGACTCGCGGGC GAAGAAGGGGGAGGAGCATGACCGATGTCACGGGGTCGGCGAGGAGAGAA AATATGAAGAAAGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1302:2321..3635+

>mRNA_L-elsbetiae_contig1302.2396.1 ID=mRNA_L-elsbetiae_contig1302.2396.1|Name=mRNA_L-elsbetiae_contig1302.2396.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=468bp|location=Sequence derived from alignment at L-elsbetiae_contig1302:2321..3635+ (Laminarionema elsbetiae ELsaHSoW15)
ATGACGGAGCGGAGGTTTCTGTCGGACGAGGGGCTGCCGGGGAGGCAGTG
GTTCCGCCACGTTCTGCAGGCGCCGGGGCTGTACTTGGGATGACGGAGCG
GAGGTTTCTGTCGGACGAGGGGCTGCCGGGGAGGCAGTGGTTCCGCCACG
TTCTGCAGGCGCCGGGGCTGTACTTGGGGTACGCCGCCGAGTCTTTCCCT
GGCATCACCCAGGCTCTAAGCGACGGCGACCTCAGCCTCGCCCAGCAGCA
GGTGCACGTCGCGGCGGCCTGCGTCAGCGACGCCGCCGCCTTCCTCGCGG
GCGAAGAAGGGAAAGGAGCATGAGTACGCCGCCGAGTCTTTCCCTGGCAT
CACCCAGGCTCTAAGCGACGGCGACCTCAGCCTCGCCCAGCAGCAGGTGC
ACGTCGCGGCGGCCTGCGTCAGCGACGCCGCCGCCTTCCTCGCGGGCGAA
GAAGGGAAAGGAGCATGA
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