mRNA_L-elsbetiae_contig1281.2258.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1281.2258.1
Unique NamemRNA_L-elsbetiae_contig1281.2258.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1281.2258.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1281contigL-elsbetiae_contig1281:465..1221 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionTetratricopeptide-like helical domain
Ec32 orthologEc-08_004240.1
Exons2
Model size238
Cds size237
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815469.029714-CDS-L-elsbetiae_contig1281:464..5581622815469.029714-CDS-L-elsbetiae_contig1281:464..558Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1281 465..558 -
1691682912.3487575-CDS-L-elsbetiae_contig1281:464..5581691682912.3487575-CDS-L-elsbetiae_contig1281:464..558Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1281 465..558 -
1622815469.0415537-CDS-L-elsbetiae_contig1281:1078..12211622815469.0415537-CDS-L-elsbetiae_contig1281:1078..1221Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1281 1079..1221 -
1691682912.3602-CDS-L-elsbetiae_contig1281:1078..12211691682912.3602-CDS-L-elsbetiae_contig1281:1078..1221Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1281 1079..1221 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1281.2258.1prot_L-elsbetiae_contig1281.2258.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1281 465..1221 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1281.2258.1

>prot_L-elsbetiae_contig1281.2258.1 ID=prot_L-elsbetiae_contig1281.2258.1|Name=mRNA_L-elsbetiae_contig1281.2258.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=79bp
HDSTYWQAYSLRGRIRFRAGDIPGALHDLTVCVREAPHDRAALNTRARLF
ASQGLWEDASRDLSAGLRGDPNDVRNAQ*
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mRNA from alignment at L-elsbetiae_contig1281:465..1221-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1281.2258.1 ID=mRNA_L-elsbetiae_contig1281.2258.1|Name=mRNA_L-elsbetiae_contig1281.2258.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=757bp|location=Sequence derived from alignment at L-elsbetiae_contig1281:465..1221- (Laminarionema elsbetiae ELsaHSoW15)
CACGACTCCACCTACTGGCAAGCCTACTCCTTGAGAGGGCGAATCCGGTT
CAGAGCAGGCGACATTCCCGGAGCTTTGCATGACTTAACGGTGTGCGTGC
GAGAGGCGCCGCACGATCGAGCCGCCCTTAACACCCGCGCCAGGTATGAC
CTATTGGTTTGCGTGCATGCTGGCAGCGAGTGGTGTTCAAAAGGAAGCCT
TTTCACGCCTGCCGTGTCAATTTCAATGCATTGGCTCATTTCGGGCCAAG
ACTTTCAATACCAGGTTCTGAGAGCTGCTTCGATGTTATCAAAGAGGAGT
GGGAAGGAACGACAACAGCACTGCTATTCTCGGCCCGAGTTTCATGCGTC
TACAGGCATAAAACAACGTGGGCTGACTCTGTTTGAGCCAACCGTAACTG
CTAGTAAAATAAACCACCAATCTACATTCGACTATCCGCTGCCTCACAGC
TGTCGCGAAAACCTCGTTATTTTGCGAAATTGCATGGGCAAAAAAAGCAA
AAACCAGACTCAGCACCATAACAGCTGCAAACACACGACCGAGTTATACA
GTCAGGGGGCTTTGGCCGAGGATCGAACGCGCTACTCGGTACTGGAAAAC
GGCTCGCCTTTTCCCTGCGTTGTTGGCCCGTCAACCGCACCGACGAACTC
ACCGTTTCAGCAGACTGTTCGCTAGCCAAGGGCTTTGGGAGGATGCGTCT
AGAGACCTGTCCGCTGGATTGCGCGGAGATCCCAACGACGTGAGAAATGC
GCAGTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1281:465..1221-

>mRNA_L-elsbetiae_contig1281.2258.1 ID=mRNA_L-elsbetiae_contig1281.2258.1|Name=mRNA_L-elsbetiae_contig1281.2258.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=474bp|location=Sequence derived from alignment at L-elsbetiae_contig1281:465..1221- (Laminarionema elsbetiae ELsaHSoW15)
CACGACTCCACCTACTGGCAAGCCTACTCCTTGAGAGGGCGAATCCGGTT
CAGAGCAGGCGACATTCCCGGAGCTTTGCATGACTTAACGGTGTGCGTGC
GAGAGGCGCCGCACGATCGAGCCGCCCTTAACACCCGCGCCAGCACGACT
CCACCTACTGGCAAGCCTACTCCTTGAGAGGGCGAATCCGGTTCAGAGCA
GGCGACATTCCCGGAGCTTTGCATGACTTAACGGTGTGCGTGCGAGAGGC
GCCGCACGATCGAGCCGCCCTTAACACCCGCGCCAGACTGTTCGCTAGCC
AAGGGCTTTGGGAGGATGCGTCTAGAGACCTGTCCGCTGGATTGCGCGGA
GATCCCAACGACGTGAGAAATGCGCAGTAGACTGTTCGCTAGCCAAGGGC
TTTGGGAGGATGCGTCTAGAGACCTGTCCGCTGGATTGCGCGGAGATCCC
AACGACGTGAGAAATGCGCAGTAG
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