mRNA_L-elsbetiae_contig12806.2257.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12806.2257.1
Unique NamemRNA_L-elsbetiae_contig12806.2257.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig12806.2257.1 vs. uniprot
Match: A0A6H5JKS5_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKS5_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 1.940e-31
Identity = 71/89 (79.78%), Postives = 78/89 (87.64%), Query Frame = 1 
Query:  559 SRRGDMSRFYDDMAEVDDDAEEDYDDKDRANASELTAMERDMHERIQRRQEKSKAFMEQSLEETAEQIMRRHGVRLPPKAARDLDDVVD 825
            SRRGDMSRFYD+MAEVDDDAEEDYDDKDRANA+ELTAMERDMHERI RRQE+SKAFMEQ LEE A+Q MRR GVRLP ++  DL   +D
Sbjct:   85 SRRGDMSRFYDEMAEVDDDAEEDYDDKDRANANELTAMERDMHERIARRQEQSKAFMEQPLEEQAKQTMRRLGVRLP-ESRNDLGGRID 172
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BLAST of mRNA_L-elsbetiae_contig12806.2257.1 vs. uniprot
Match: D7FI29_ECTSI (Transcription elongation factor SPT5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI29_ECTSI)

HSP 1 Score: 115 bits (288), Expect = 4.150e-25
Identity = 66/84 (78.57%), Postives = 73/84 (86.90%), Query Frame = 1 
Query:  574 MSRFYDDMAEVDDDAEEDYDDKDRANASELTAMERDMHERIQRRQEKSKAFMEQSLEETAEQIMRRHGVRLPPKAARDLDDVVD 825
            MSRFYD+MAEVDDDAEEDYDDKDRANA+ELTAMERDMHERI RRQE+SKAFMEQ LEE A+Q MRR GVRLP ++  DL   +D
Sbjct:    1 MSRFYDEMAEVDDDAEEDYDDKDRANANELTAMERDMHERIARRQEQSKAFMEQPLEEQAKQTMRRLGVRLP-ESRNDLGGRID 83
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12806.2257.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JKS5_9PHAE1.940e-3179.78Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D7FI29_ECTSI4.150e-2578.57Transcription elongation factor SPT5 n=1 Tax=Ectoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12806contigL-elsbetiae_contig12806:548..3412 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score116.3
Seed ortholog evalue1.4e-23
Seed eggNOG ortholog2880.D7FI29
KEGG koko:K11292,ko:K15172
Hectar predicted targeting categoryother localisation
EggNOG free text desc.regulation of DNA-templated transcription, elongation
EggNOG OGsCOG5164@1,KOG1999@2759
COG Functional cat.K
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko03019,ko03021,ko03036
Exons3
Model size879
Cds size522
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12806.2257.1prot_L-elsbetiae_contig12806.2257.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12806 548..3055 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815467.552226-CDS-L-elsbetiae_contig12806:547..7491622815467.552226-CDS-L-elsbetiae_contig12806:547..749Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12806 548..749 -
1691682912.2892804-CDS-L-elsbetiae_contig12806:547..7491691682912.2892804-CDS-L-elsbetiae_contig12806:547..749Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12806 548..749 -
1622815468.8222873-CDS-L-elsbetiae_contig12806:1573..16691622815468.8222873-CDS-L-elsbetiae_contig12806:1573..1669Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12806 1574..1669 -
1691682912.3006835-CDS-L-elsbetiae_contig12806:1573..16691691682912.3006835-CDS-L-elsbetiae_contig12806:1573..1669Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12806 1574..1669 -
1622815468.9426928-CDS-L-elsbetiae_contig12806:2831..30551622815468.9426928-CDS-L-elsbetiae_contig12806:2831..3055Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12806 2832..3055 -
1691682912.3099601-CDS-L-elsbetiae_contig12806:2831..30551691682912.3099601-CDS-L-elsbetiae_contig12806:2831..3055Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12806 2832..3055 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815468.9534402-UTR-L-elsbetiae_contig12806:3055..34121622815468.9534402-UTR-L-elsbetiae_contig12806:3055..3412Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12806 3056..3412 -
1691682912.321087-UTR-L-elsbetiae_contig12806:3055..34121691682912.321087-UTR-L-elsbetiae_contig12806:3055..3412Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12806 3056..3412 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12806.2257.1

>prot_L-elsbetiae_contig12806.2257.1 ID=prot_L-elsbetiae_contig12806.2257.1|Name=mRNA_L-elsbetiae_contig12806.2257.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=174bp
MADDGLRDSDSEREEEEEEEEEEEEEEEAASSAYEDSDDGGGSRKRAGSS
SRGKKRAREPAAAAKRKSRRGDMSRFYDDMAEVDDDAEEDYDDKDRANAS
ELTAMERDMHERIQRRQEKSKAFMEQSLEETAEQIMRRHGVRLPPKAARD
LDDVVDDDDDDEFGMASGMRGGGG
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mRNA from alignment at L-elsbetiae_contig12806:548..3412-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12806.2257.1 ID=mRNA_L-elsbetiae_contig12806.2257.1|Name=mRNA_L-elsbetiae_contig12806.2257.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2865bp|location=Sequence derived from alignment at L-elsbetiae_contig12806:548..3412- (Laminarionema elsbetiae ELsaHSoW15)
TTGGCTTGTCACACGACAGGAAGGCAAGAGACGTGGCCTGGCACTGTGAA
CTGTTGTGGGCGCCAGGAGAAAATCTAATCAAGCTTTTTAAGAAGCAAAG
AAAATAACAACGAGACGAGCCACGCCCGTGGATCTACTTGTGTTTTCTTC
TCCAGCGAAAAAGAGCGAGCAGCCACGGGAGACTTTGACCTCGCAGAGCT
TGCGGTGCTTGCTTGGCCTGCGCACACACAGAGGAACCCACCTTCGTTGC
GGGAGGAGGAATAAATCGCAGCGGGGCCGATCTTGCTTCGCGCCTGGCCC
ACGTTCGCTCCCCACGAAGAGAGGAGGAGGAGATAGCACACACACTCCGT
TCTCGTCATGGCGGACGATGGTTTGCGCGACAGCGACTCGGAACGAGAAG
AGGAGGAGGAAGAGGAAGAGGAGGAGGAGGAAGAAGAGGAAGCGGCCTCG
TCTGCCTACGAAGATTCGGACGATGGCGGCGGCAGTAGAAAGCGGGCCGG
CAGCAGTAGCCGGGGTAAGAAGCGGGCGCGGGAACCGGCGGCGGCGGCCA
AGAGAAAGTCCAGGAGAGGAGACATGTCGAGGTGCGTGGTGTGAGAGAGC
TATGTACTAGCACTGTGTGTGTGTGTCCTTCCCATTTATTTTGGCGTCAG
TCCTCCCAAGTGGGGGCGTGTACTACACCTTGCGATGTACTGAGAGGTAC
TACACTTTGCAGCGCATTTGTCTGTACAACTAGAACAACCGGGGTCACAC
AGGAGGGGGTGAAAAATCACTTTACGTACACCCCAAATGCCCACAGCAGC
CGCTCTGTTTTAGGCTTGGCGTCAATGTGTGCACGCTGCCGACTGCGGAC
GATGCTACAGCAAAACACGTTTGGAGCTGTAGCTGTGGATGTACATTTTC
CTTGTCCAGCGTAGTCTACGTATTTACATTTATGTCAGTACGTGCAGGGG
AGGGAGGGGTGATGTCCTCACACACACACCTGAACACCCGAGACGGAGAG
AGAGAGAAGGGAGATCGGAGAGAGATAGAGAGAGAGAGAGAGAGAGAGAG
AGAGAGAGAAGAAAGAGAGAGGGTTGTTTGGTTTTGTTATGAGCAAAAAA
ATAGTTTGTACAGCAGTACAATAATAACGGTTTATTACGACGCCCTCTGG
CAGACAGGCACACATGGCGTGTGCTCCGGGAGGATGTCCTGGTACATATC
ACAGCAATCTAACATAGCATTTCGAGTTCCTCACATTCCACTGTAAACCT
TGTCAGATATTGCCGAATCCGCCGAGCCAACGCGGAAAGCACTCGCATGG
TATGTATACAATAGACTATCTAGACTTACGACGCGAGTGTATCTTACAAA
TATCTTAATCTTAGTCTTATGCATATATAACAGCGCGACAAGCTCCCGGG
TGTTTTTTGTGGGGTCCAAAGGAAGGGGCCGAAGAAATGGCTGGTATGTA
TCTATGCATGTATGTATGCCGCACTATGGTGCAGCTTGGAAGCCGCAATC
ACACCGTATGTGCATATATCAGCTACATACAATACAACAGTAGGCATAGC
TCCACAGAATATTTCTACCGCTGCTTTACACAATGGAAGATACTCCGTTC
GCCCCCGGTTGTATTTAGCCTCCCAGAGAGCTGAACTCGTTTTTTTTTCT
TCCGCGTGCTCCTTCAACGTCTCGTGTCCCTCGCTTGCCGTCGCCGCTCC
TTGATGCACGGTGTGTGTGTGTGGGGGGGGGGTGTCGGGACAGATTTTAC
GACGACATGGCGGAGGTCGACGACGACGCCGAGGAGGACTACGACGACAA
GGACAGAGCCAACGCTAGCGAGCTCACGGCCATGGAGAGGTACTGCTGTA
CGCCGCGTTTTGCCCTTGGTCTATGTTTGTAGAGATAGACGTACATACAT
ACGGCAGCGAGACTTTTTAGTGCGGCCGGCCACGCGAAACAGCCGGTAGT
ACATACCAGTATCTGATACTTATGCACCCACGCACGGTTGTGGCGTGCGT
TGCTGGTTTATCTGCTAAAGCATCTCCGGCGGTGCTCGGTGCTCCAGCAG
CTTTGCATGTAGGGTATTGGCGGTCGGTGAGGACTGGGCGGAAGGCGCGA
AACGGGGGGTCCTCCATAAAAGCTCGCGTGGGCTTTTGTGGACAAGATTA
ATATTGTACACACGGAAAAAGAGTCATCGCATGATTGGTGGTGGATTTTA
GGGTTCGTCCTGTCTTCGGCGGGCGGGGATATTTTTGTCTTTGCCCACTG
TATTCATGCAAGTACCGTAGGTGGCACAAGATACCACACCCCCTGGGCAG
ATTTTCAAAGCTCGATTCCTCCCCAGCAAGAAGAGCGCCAGTGCCAAAAA
GGGCAGCGTTGGAAAGATCTAGCCGAGGGCTGTCCGAAAATGTTTTGTGT
GGTGCTGGCACCTTCTTCGTTACGGAGTAATGGATCTCTGAAATTCGGTC
CAGGGGGTGTGGTATCTTGTGTCACCTACGGTAAGCACATCTCCGGAATG
CATAACTATGTGCTGTCAAGAAGGAGGATGCTACACTGTGTATGTAGGGC
CAACGATAAAACGAACCAACGCCGTGAAATCATGCACCCCCCCCGCGCTC
CCGCTCCCGCTCCCGCTCCCGCTCCCGCTCCCGCTCCCGCTCCCGCTCCC
CCCCCGCAAACAGAGACATGCACGAGCGTATTCAGCGGCGGCAGGAGAAA
AGCAAGGCCTTCATGGAGCAGTCCCTCGAGGAGACCGCCGAGCAGATAAT
GCGGAGGCACGGGGTGCGCCTGCCCCCGAAGGCCGCCCGGGATCTCGACG
ACGTCGTCGACGACGACGACGACGACGAATTCGGCATGGCGTCGGGGATG
CGCGGGGGCGGGGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12806:548..3412-

>mRNA_L-elsbetiae_contig12806.2257.1 ID=mRNA_L-elsbetiae_contig12806.2257.1|Name=mRNA_L-elsbetiae_contig12806.2257.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1044bp|location=Sequence derived from alignment at L-elsbetiae_contig12806:548..3412- (Laminarionema elsbetiae ELsaHSoW15)
ATGGCGGACGATGGTTTGCGCGACAGCGACTCGGAACGAGAAGAGGAGGA
GGAAGAGGAAGAGGAGGAGGAGGAAGAAGAGGAAGCGGCCTCGTCTGCCT
ACGAAGATTCGGACGATGGCGGCGGCAGTAGAAAGCGGGCCGGCAGCAGT
AGCCGGGGTAAGAAGCGGGCGCGGGAACCGGCGGCGGCGGCCAAGAGAAA
GTCCAGGAGAGGAGACATGTCGAGATGGCGGACGATGGTTTGCGCGACAG
CGACTCGGAACGAGAAGAGGAGGAGGAAGAGGAAGAGGAGGAGGAGGAAG
AAGAGGAAGCGGCCTCGTCTGCCTACGAAGATTCGGACGATGGCGGCGGC
AGTAGAAAGCGGGCCGGCAGCAGTAGCCGGGGTAAGAAGCGGGCGCGGGA
ACCGGCGGCGGCGGCCAAGAGAAAGTCCAGGAGAGGAGACATGTCGAGAT
TTTACGACGACATGGCGGAGGTCGACGACGACGCCGAGGAGGACTACGAC
GACAAGGACAGAGCCAACGCTAGCGAGCTCACGGCCATGGAGAGATTTTA
CGACGACATGGCGGAGGTCGACGACGACGCCGAGGAGGACTACGACGACA
AGGACAGAGCCAACGCTAGCGAGCTCACGGCCATGGAGAGAGACATGCAC
GAGCGTATTCAGCGGCGGCAGGAGAAAAGCAAGGCCTTCATGGAGCAGTC
CCTCGAGGAGACCGCCGAGCAGATAATGCGGAGGCACGGGGTGCGCCTGC
CCCCGAAGGCCGCCCGGGATCTCGACGACGTCGTCGACGACGACGACGAC
GACGAATTCGGCATGGCGTCGGGGATGCGCGGGGGCGGGGGCAGACATGC
ACGAGCGTATTCAGCGGCGGCAGGAGAAAAGCAAGGCCTTCATGGAGCAG
TCCCTCGAGGAGACCGCCGAGCAGATAATGCGGAGGCACGGGGTGCGCCT
GCCCCCGAAGGCCGCCCGGGATCTCGACGACGTCGTCGACGACGACGACG
ACGACGAATTCGGCATGGCGTCGGGGATGCGCGGGGGCGGGGGC
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