prot_L-elsbetiae_contig12806.2257.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig12806.2257.1
Unique Nameprot_L-elsbetiae_contig12806.2257.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length174
Homology
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BLAST of mRNA_L-elsbetiae_contig12806.2257.1 vs. uniprot
Match: A0A6H5JKS5_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JKS5_9PHAE)

HSP 1 Score: 125 bits (313), Expect = 5.710e-33
Identity = 71/89 (79.78%), Postives = 78/89 (87.64%), Query Frame = 0 
Query:   68 SRRGDMSRFYDDMAEVDDDAEEDYDDKDRANASELTAMERDMHERIQRRQEKSKAFMEQSLEETAEQIMRRHGVRLPPKAARDLDDVVD 156
            SRRGDMSRFYD+MAEVDDDAEEDYDDKDRANA+ELTAMERDMHERI RRQE+SKAFMEQ LEE A+Q MRR GVRLP ++  DL   +D
Sbjct:   85 SRRGDMSRFYDEMAEVDDDAEEDYDDKDRANANELTAMERDMHERIARRQEQSKAFMEQPLEEQAKQTMRRLGVRLP-ESRNDLGGRID 172
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BLAST of mRNA_L-elsbetiae_contig12806.2257.1 vs. uniprot
Match: D7FI29_ECTSI (Transcription elongation factor SPT5 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI29_ECTSI)

HSP 1 Score: 115 bits (288), Expect = 1.230e-26
Identity = 66/84 (78.57%), Postives = 73/84 (86.90%), Query Frame = 0 
Query:   73 MSRFYDDMAEVDDDAEEDYDDKDRANASELTAMERDMHERIQRRQEKSKAFMEQSLEETAEQIMRRHGVRLPPKAARDLDDVVD 156
            MSRFYD+MAEVDDDAEEDYDDKDRANA+ELTAMERDMHERI RRQE+SKAFMEQ LEE A+Q MRR GVRLP ++  DL   +D
Sbjct:    1 MSRFYDEMAEVDDDAEEDYDDKDRANANELTAMERDMHERIARRQEQSKAFMEQPLEEQAKQTMRRLGVRLP-ESRNDLGGRID 83
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12806.2257.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JKS5_9PHAE5.710e-3379.78Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D7FI29_ECTSI1.230e-2678.57Transcription elongation factor SPT5 n=1 Tax=Ectoc... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 6..36

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12806contigL-elsbetiae_contig12806:548..3055 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12806.2257.1mRNA_L-elsbetiae_contig12806.2257.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig12806 548..3412 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig12806.2257.1 ID=prot_L-elsbetiae_contig12806.2257.1|Name=mRNA_L-elsbetiae_contig12806.2257.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=174bp
MADDGLRDSDSEREEEEEEEEEEEEEEEAASSAYEDSDDGGGSRKRAGSS
SRGKKRAREPAAAAKRKSRRGDMSRFYDDMAEVDDDAEEDYDDKDRANAS
ELTAMERDMHERIQRRQEKSKAFMEQSLEETAEQIMRRHGVRLPPKAARD
LDDVVDDDDDDEFGMASGMRGGGG
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