mRNA_L-elsbetiae_contig1280.2254.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1280.2254.1
Unique NamemRNA_L-elsbetiae_contig1280.2254.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1280.2254.1 vs. uniprot
Match: B5LWG2_9PHYC (Uncharacterized protein n=1 Tax=Feldmannia species virus TaxID=39420 RepID=B5LWG2_9PHYC)

HSP 1 Score: 110 bits (275), Expect = 3.920e-24
Identity = 85/243 (34.98%), Postives = 124/243 (51.03%), Query Frame = 1 
Query:  313 YEGNDLVARIIFGTEYDASYFECDFRISLV--CGVDVVSSTVTCDIPETAQRVANDQYNPEDSDSSSGCSSTAISLATHDATT---------YQSIEDPSYAACVVEFDKCYFVDKAKCDEVGICTKACLSNLVAGGPSFHRMMDGDSREGGRSPTLLLDDPEISPDDMLRDSQGRLRTRVNVKLIFRDHNTGTAAASMLMLKDGTKAVEGSVCEYWTHVHVLEPGIFVQAVIWKAKKTREAW 1008
            YE  DL  R++F T+  A  F      +LV     D+  S   CD+PE    V    Y  ++SDS    SS  +S+AT   +T         +Q IEDP     +   DKC+ VDKA CDEVGIC K   +N++   P+ HRM+DG     G+SP + ++  EI   D + DS G  RT   +K+ FR+     A  S L L   ++ ++ +   Y T V++++P +FV+   WK K+T E W
Sbjct:   39 YEEEDLRVRLVFPTQDRAIGFANLLGDNLVGYSEGDIRHSFEPCDVPEDPVMVKVSHYVEDESDSPPNPSS--VSIATTSFSTMFCNDEDIRFQMIEDPGLLH-MGRPDKCHLVDKALCDEVGICKKRDHNNILCCMPTTHRMLDG---VPGQSPVIRIEPVEIVESDKVMDSAGVSRTACKLKIHFRE--LIIAKFSTLRLNSSSRMIDETT--YETFVYMVDPELFVRCAAWKNKRTLEMW 271
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1280.2254.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
B5LWG2_9PHYC3.920e-2434.98Uncharacterized protein n=1 Tax=Feldmannia species... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1280contigL-elsbetiae_contig1280:19384..21033 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons3
Model size1210
Cds size918
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1280.2254.1prot_L-elsbetiae_contig1280.2254.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1280 19577..20624 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815467.375328-UTR-L-elsbetiae_contig1280:19383..195761622815467.375328-UTR-L-elsbetiae_contig1280:19383..19576Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1280 19384..19576 -
1691682912.202162-UTR-L-elsbetiae_contig1280:19383..195761691682912.202162-UTR-L-elsbetiae_contig1280:19383..19576Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1280 19384..19576 -
1622815467.411049-UTR-L-elsbetiae_contig1280:20624..206251622815467.411049-UTR-L-elsbetiae_contig1280:20624..20625Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1280 20625..20625 -
1691682912.228591-UTR-L-elsbetiae_contig1280:20624..206251691682912.228591-UTR-L-elsbetiae_contig1280:20624..20625Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1280 20625..20625 -
1622815467.421712-UTR-L-elsbetiae_contig1280:20935..210331622815467.421712-UTR-L-elsbetiae_contig1280:20935..21033Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1280 20936..21033 -
1691682912.2368371-UTR-L-elsbetiae_contig1280:20935..210331691682912.2368371-UTR-L-elsbetiae_contig1280:20935..21033Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1280 20936..21033 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815467.3859487-CDS-L-elsbetiae_contig1280:19576..204121622815467.3859487-CDS-L-elsbetiae_contig1280:19576..20412Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1280 19577..20412 -
1691682912.2129264-CDS-L-elsbetiae_contig1280:19576..204121691682912.2129264-CDS-L-elsbetiae_contig1280:19576..20412Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1280 19577..20412 -
1622815467.3977766-CDS-L-elsbetiae_contig1280:20542..206241622815467.3977766-CDS-L-elsbetiae_contig1280:20542..20624Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1280 20543..20624 -
1691682912.2205303-CDS-L-elsbetiae_contig1280:20542..206241691682912.2205303-CDS-L-elsbetiae_contig1280:20542..20624Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1280 20543..20624 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1280.2254.1

>prot_L-elsbetiae_contig1280.2254.1 ID=prot_L-elsbetiae_contig1280.2254.1|Name=mRNA_L-elsbetiae_contig1280.2254.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=306bp
MISLAGCLPFASRMFSRTRSCVRAQEAEKGFLVTINVKDARHTFSRPRRN
IFMLGAKYLGKWPQGNVSDCKYEGNDLVARIIFGTEYDASYFECDFRISL
VCGVDVVSSTVTCDIPETAQRVANDQYNPEDSDSSSGCSSTAISLATHDA
TTYQSIEDPSYAACVVEFDKCYFVDKAKCDEVGICTKACLSNLVAGGPSF
HRMMDGDSREGGRSPTLLLDDPEISPDDMLRDSQGRLRTRVNVKLIFRDH
NTGTAAASMLMLKDGTKAVEGSVCEYWTHVHVLEPGIFVQAVIWKAKKTR
EAWLE*
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mRNA from alignment at L-elsbetiae_contig1280:19384..21033-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1280.2254.1 ID=mRNA_L-elsbetiae_contig1280.2254.1|Name=mRNA_L-elsbetiae_contig1280.2254.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1650bp|location=Sequence derived from alignment at L-elsbetiae_contig1280:19384..21033- (Laminarionema elsbetiae ELsaHSoW15)
CGCACTCTCAGCAACGCCCGCGCAGCAGCAGCACCGGCACCCGGCACCAG
CAGTGTTGGCAGGCACCAAGCCCTTGCAGCGTCGCCGCCGCGCAGCAGGT
ATGTTCACCCTGTCGTGTATGATCTATGTTATCGGCGGGCGCAGGCGGGT
CGCACATGCAACGATTCGAAGGATACCCATTCGTCGGCGTGGCGTGGTAC
CAGCGCGCACAAATGGAGGCAAATGGGGTTAGGGTTAGGATACTCTGCAG
ACACATTCAAAAGTCACCTGTCGGGAAGGGCTTACGCACGTGCACCCCAT
ATACTGTTTGTTAGGGCACGCCCCGCCTGTTTGTTTTACCCAATTTGTCA
GATATTTTCTCGAGGACACGACCATACTCCACCTTCTTGACTGTTGCCAC
ACTTCCAGGATGATTTCCCTCGCTGGATGTCTACCATTCGCCTCAAGAAT
GTTCTCCAGAACGCGAAGCTGTGTCCGGGCTCAAGAAGCCGGTGAGACTA
AAAGTAGCGCTCCAAATAAATCGAAATATACACGTTAAGTGTTAGGGTTA
GGTACATGTGCGCACATTCGGCAACCTAAAATCCGGCTTCCCTTTATTCT
CGCGAACTGTCTATTGTACAGAAAAAGGTTTCCTCGTCACGATCAACGTG
AAGGACGCTCGGCATACTTTTTCACGACCTCGGAGAAACATCTTCATGCT
CGGCGCCAAGTACTTAGGGAAGTGGCCTCAGGGGAATGTGTCAGACTGCA
AGTATGAAGGAAATGATTTGGTGGCCAGGATCATCTTTGGAACTGAATAT
GATGCTTCTTATTTCGAATGCGATTTCCGCATATCACTTGTCTGTGGCGT
AGATGTTGTTTCTTCTACCGTGACGTGCGACATCCCGGAAACAGCACAAA
GGGTTGCTAACGATCAGTACAACCCTGAGGATAGTGATTCCTCCAGCGGA
TGTTCCAGCACTGCAATTTCCTTGGCCACGCATGATGCAACTACGTATCA
GTCAATCGAGGACCCAAGTTATGCAGCTTGTGTGGTGGAGTTTGACAAGT
GTTATTTTGTTGATAAGGCAAAGTGTGACGAGGTCGGCATATGCACAAAG
GCGTGCCTGAGTAATTTGGTGGCTGGTGGCCCTAGTTTCCACCGAATGAT
GGACGGTGATTCGAGGGAGGGAGGTCGTTCGCCCACACTTCTTCTTGATG
ATCCGGAAATAAGCCCCGATGATATGTTGAGGGACAGTCAGGGTAGGTTG
CGGACCAGGGTAAACGTAAAGTTAATCTTTCGTGACCATAACACTGGCAC
CGCCGCGGCAAGCATGCTGATGTTGAAAGACGGGACAAAGGCGGTGGAGG
GGTCTGTGTGTGAGTACTGGACACACGTCCATGTGCTTGAACCCGGTATC
TTCGTACAGGCAGTGATATGGAAGGCAAAGAAGACCAGAGAGGCATGGCT
AGAGTAGGGTTATCTGTCGTATTTGCGCCATTGGTCATTACCGCAAAGTG
GTTGCACATCATGAGAGAAAACGTGGTAAAATATGTTTGCAGTGCAATAT
GAACATGATGTTGTTCGCACCTTGGCTACTCGGGGTGCTTTCGCCTCTCG
CACCTTTGCTAATACCCCTGTTTTCGCCATTTGTTGGGGGTGGGATAGAC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1280:19384..21033-

>mRNA_L-elsbetiae_contig1280.2254.1 ID=mRNA_L-elsbetiae_contig1280.2254.1|Name=mRNA_L-elsbetiae_contig1280.2254.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1836bp|location=Sequence derived from alignment at L-elsbetiae_contig1280:19384..21033- (Laminarionema elsbetiae ELsaHSoW15)
ATGATTTCCCTCGCTGGATGTCTACCATTCGCCTCAAGAATGTTCTCCAG
AACGCGAAGCTGTGTCCGGGCTCAAGAAGCCGATGATTTCCCTCGCTGGA
TGTCTACCATTCGCCTCAAGAATGTTCTCCAGAACGCGAAGCTGTGTCCG
GGCTCAAGAAGCCGAAAAAGGTTTCCTCGTCACGATCAACGTGAAGGACG
CTCGGCATACTTTTTCACGACCTCGGAGAAACATCTTCATGCTCGGCGCC
AAGTACTTAGGGAAGTGGCCTCAGGGGAATGTGTCAGACTGCAAGTATGA
AGGAAATGATTTGGTGGCCAGGATCATCTTTGGAACTGAATATGATGCTT
CTTATTTCGAATGCGATTTCCGCATATCACTTGTCTGTGGCGTAGATGTT
GTTTCTTCTACCGTGACGTGCGACATCCCGGAAACAGCACAAAGGGTTGC
TAACGATCAGTACAACCCTGAGGATAGTGATTCCTCCAGCGGATGTTCCA
GCACTGCAATTTCCTTGGCCACGCATGATGCAACTACGTATCAGTCAATC
GAGGACCCAAGTTATGCAGCTTGTGTGGTGGAGTTTGACAAGTGTTATTT
TGTTGATAAGGCAAAGTGTGACGAGGTCGGCATATGCACAAAGGCGTGCC
TGAGTAATTTGGTGGCTGGTGGCCCTAGTTTCCACCGAATGATGGACGGT
GATTCGAGGGAGGGAGGTCGTTCGCCCACACTTCTTCTTGATGATCCGGA
AATAAGCCCCGATGATATGTTGAGGGACAGTCAGGGTAGGTTGCGGACCA
GGGTAAACGTAAAGTTAATCTTTCGTGACCATAACACTGGCACCGCCGCG
GCAAGCATGCTGATGTTGAAAGACGGGACAAAGGCGGTGGAGGGGTCTGT
GTGTGAGTACTGGACACACGTCCATGTGCTTGAACCCGGTATCTTCGTAC
AGGCAGTGATATGGAAGGCAAAGAAGACCAGAGAGGCATGGCTAGAGTAG
AAAAAGGTTTCCTCGTCACGATCAACGTGAAGGACGCTCGGCATACTTTT
TCACGACCTCGGAGAAACATCTTCATGCTCGGCGCCAAGTACTTAGGGAA
GTGGCCTCAGGGGAATGTGTCAGACTGCAAGTATGAAGGAAATGATTTGG
TGGCCAGGATCATCTTTGGAACTGAATATGATGCTTCTTATTTCGAATGC
GATTTCCGCATATCACTTGTCTGTGGCGTAGATGTTGTTTCTTCTACCGT
GACGTGCGACATCCCGGAAACAGCACAAAGGGTTGCTAACGATCAGTACA
ACCCTGAGGATAGTGATTCCTCCAGCGGATGTTCCAGCACTGCAATTTCC
TTGGCCACGCATGATGCAACTACGTATCAGTCAATCGAGGACCCAAGTTA
TGCAGCTTGTGTGGTGGAGTTTGACAAGTGTTATTTTGTTGATAAGGCAA
AGTGTGACGAGGTCGGCATATGCACAAAGGCGTGCCTGAGTAATTTGGTG
GCTGGTGGCCCTAGTTTCCACCGAATGATGGACGGTGATTCGAGGGAGGG
AGGTCGTTCGCCCACACTTCTTCTTGATGATCCGGAAATAAGCCCCGATG
ATATGTTGAGGGACAGTCAGGGTAGGTTGCGGACCAGGGTAAACGTAAAG
TTAATCTTTCGTGACCATAACACTGGCACCGCCGCGGCAAGCATGCTGAT
GTTGAAAGACGGGACAAAGGCGGTGGAGGGGTCTGTGTGTGAGTACTGGA
CACACGTCCATGTGCTTGAACCCGGTATCTTCGTACAGGCAGTGATATGG
AAGGCAAAGAAGACCAGAGAGGCATGGCTAGAGTAG
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