mRNA_L-elsbetiae_contig12795.2239.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12795.2239.1
Unique NamemRNA_L-elsbetiae_contig12795.2239.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig12795.2239.1 vs. uniprot
Match: D8LDW6_ECTSI (Cupin-like protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LDW6_ECTSI)

HSP 1 Score: 112 bits (280), Expect = 4.130e-25
Identity = 55/71 (77.46%), Postives = 60/71 (84.51%), Query Frame = 3 
Query:  285 LNNEDPGAVTIMTRFFELPSEAIQASLTSDDRALQALIESLPEAPAAARRQCLKMCGLDNGDDDLSYDYGY 497
            LNN+DPGAVTI TRFFELPSEAIQASL  +D ALQ LIESLP+APAAARRQCL+ CGL +G D  SY YGY
Sbjct:  157 LNNDDPGAVTITTRFFELPSEAIQASLNFEDPALQRLIESLPDAPAAARRQCLERCGLADGGDGFSYSYGY 227
[Close]
BLAST of mRNA_L-elsbetiae_contig12795.2239.1 vs. uniprot
Match: A0A6H5JV79_9PHAE (Cupin type-1 domain-containing protein n=6 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JV79_9PHAE)

HSP 1 Score: 97.8 bits (242), Expect = 9.650e-20
Identity = 48/74 (64.86%), Postives = 57/74 (77.03%), Query Frame = 3 
Query:  285 LNNEDPGAVTIMTRFFELPSEAIQASLTSDDRALQALIESLPEAPAAARRQCLKMCGLDNGDDDLSYDYGYDSD 506
            LNNEDPGA+TI TRFFELP EAIQAS+  ++  LQ LIESLP+APAAAR+QCL+ C +    +  SYDY YD D
Sbjct:  156 LNNEDPGAITITTRFFELPLEAIQASVNFEEPVLQNLIESLPDAPAAARQQCLQRCRMAEPGNHFSYDYTYDVD 229
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12795.2239.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LDW6_ECTSI4.130e-2577.46Cupin-like protein n=1 Tax=Ectocarpus siliculosus ... [more]
A0A6H5JV79_9PHAE9.650e-2064.86Cupin type-1 domain-containing protein n=6 Tax=Ect... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12795contigL-elsbetiae_contig12795:3557..5203 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score91.7
Seed ortholog evalue1.5e-16
Seed eggNOG ortholog2880.D8LDW4
Hectar predicted targeting categoryother localisation
EggNOG free text desc.nutrient reservoir activity
EggNOG OGs2BYKQ@1,2QQ4A@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptioncupin-like protein
Ec32 orthologEc-23_003580.1
Exons2
Model size1302
Cds size216
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12795.2239.1prot_L-elsbetiae_contig12795.2239.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12795 4326..4886 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815466.1760128-UTR-L-elsbetiae_contig12795:3556..43251622815466.1760128-UTR-L-elsbetiae_contig12795:3556..4325Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12795 3557..4325 -
1691682911.5290132-UTR-L-elsbetiae_contig12795:3556..43251691682911.5290132-UTR-L-elsbetiae_contig12795:3556..4325Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12795 3557..4325 -
1622815466.2173188-UTR-L-elsbetiae_contig12795:4886..52031622815466.2173188-UTR-L-elsbetiae_contig12795:4886..5203Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12795 4887..5203 -
1691682911.5593119-UTR-L-elsbetiae_contig12795:4886..52031691682911.5593119-UTR-L-elsbetiae_contig12795:4886..5203Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12795 4887..5203 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815466.1876385-CDS-L-elsbetiae_contig12795:4325..45021622815466.1876385-CDS-L-elsbetiae_contig12795:4325..4502Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12795 4326..4502 -
1691682911.5400882-CDS-L-elsbetiae_contig12795:4325..45021691682911.5400882-CDS-L-elsbetiae_contig12795:4325..4502Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12795 4326..4502 -
1622815466.1978285-CDS-L-elsbetiae_contig12795:4847..48861622815466.1978285-CDS-L-elsbetiae_contig12795:4847..4886Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12795 4848..4886 -
1691682911.5495117-CDS-L-elsbetiae_contig12795:4847..48861691682911.5495117-CDS-L-elsbetiae_contig12795:4847..4886Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12795 4848..4886 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12795.2239.1

>prot_L-elsbetiae_contig12795.2239.1 ID=prot_L-elsbetiae_contig12795.2239.1|Name=mRNA_L-elsbetiae_contig12795.2239.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=72bp
MTRFFELPSEAIQASLTSDDRALQALIESLPEAPAAARRQCLKMCGLDNG
DDDLSYDYGYDSDGTKDLEDI*
back to top

mRNA from alignment at L-elsbetiae_contig12795:3557..5203-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12795.2239.1 ID=mRNA_L-elsbetiae_contig12795.2239.1|Name=mRNA_L-elsbetiae_contig12795.2239.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1647bp|location=Sequence derived from alignment at L-elsbetiae_contig12795:3557..5203- (Laminarionema elsbetiae ELsaHSoW15)
GCAGGAATGTGAGCAGCATACCTTGTGTCGCCACTTGAGAAAGAGCGTCC
ACCACCGCATCCCTGCACCAACCTCCGTTATATTACTTGTACCACCATGC
AGATGCTGTACGTGATCGAAGCCGGGAAGCTCCGCGTGGTCTTCGTCGAG
GAGAACGGGGGCAAGGGAGCCGTGGTCAACGACCTCTGCCAAAGTGACGT
TGCCTTCTTCCCCCAGGGTCTCATCCACTTAATACTAGCAGCAGAACCTC
GACTGCGAGCCGGTGACGTTCCTGGAAGCTCTATCTAAACAACGAAGACC
CCGGCGCGGTGACGATCATGACTCGCTTCTTTGAGCTGCCGAGCGAGGCC
ATTCAGGTGAAATTCGTTCGCGTATAACGTTTCATTTCCTCCGTTGGTCC
GCGGTATAGCTGTCGAGGTTTCAAGATGGGGGGCATTGCTTGTGAATTGG
TGTCTACGCAGGCCCGTGAAATCTAGTTGGTGGGCCTGAATCTGTTATTT
GGTACATGTTGAAACCCAGCATGGACCTACTGGCACATCGACTTGACTTG
GGATGGAGACCATCGCTGACCCTTCTCCATGTCGTAGTTTGACTGGAGGC
TTAGCCCGTGGTCCACGCTTTACCTGCTGCAGATGCTTGACACTCACACA
ACTCCCCTCCGGCGCGCTTGATTGTCTGCGTTGCTCGTGTGGCTCTTTCA
GGCTTCCTTGACCTCCGACGATCGCGCGCTTCAGGCCCTCATCGAGTCTC
TGCCTGAGGCACCCGCCGCGGCTCGTCGTCAGTGCCTCAAGATGTGTGGC
CTGGACAATGGGGATGACGACCTCAGCTACGACTACGGCTACGATTCCGA
CGGCACAAAGGACTTGGAGGATATCTAGCCTACCGAGGTTCTGAAGATAG
CTCGCTCCTGTGGTAGATTTTCGAGAACCAAAAGTCCAAGTAATAGTGGG
CGTGTGCTGGCGTTGTTTTGGGGAGCGTCGTATGTACATAAGAGGTCGGC
TAGTTCGTTTGTTCTTGCGGTACAATGGATTGCGAGGCTCTGCACAATGC
ACAAGCGGGTCCTTCGAACTTGCTACGATCTTCGATTTTTCTCCGGGTGG
TTGGCGATCAGCGACAAAAAGCATTTGTGGAAGTGGATGGTGCACACCAT
GTGTCTACCAGTCGTGGCTGAGTTATTTGTAGGGCAAGCTGAAAATTCGA
GTGATCAGACAGAACGAGTGTAGAGAGATAGAAGGGAGGGGTTCATGCAT
CCACGTGCTGCCCTTGGGTGAGCTTGTCTGGCTTGCCTCAAGATACGTGT
GTTTCCGCTTTGCCTGTCTTTGTGATTTAATATGTTTGTTCGCCCGGGTT
GGGGGACTACTTGTAGTTCAACGATAGTGTGCCTGATAGCATGTGTCGTC
GAAGATTTGGTTCCGTACTTGTTAAGCGTGTGGTGTGATGCGGTGCGCGT
ATGGCTGTGGGAGTATTGGTGTTGGGTGGATGGGTCGAGGTGACGGTTGA
TAACATTAAAGACGCAGGAGTCTGGCCGCGAGTTTGAGTGTCGGGAGCCT
TCAGCTTGGGTGCTCTTGGTAGCTGTGTCTATGGTTCGTCCCATCTATTC
GGTCGTCTGCACGTTTCGGGGTGTGGTTGTGGTGTAGTATCAGCCGG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig12795:3557..5203-

>mRNA_L-elsbetiae_contig12795.2239.1 ID=mRNA_L-elsbetiae_contig12795.2239.1|Name=mRNA_L-elsbetiae_contig12795.2239.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=432bp|location=Sequence derived from alignment at L-elsbetiae_contig12795:3557..5203- (Laminarionema elsbetiae ELsaHSoW15)
ATGACTCGCTTCTTTGAGCTGCCGAGCGAGGCCATTCAGATGACTCGCTT
CTTTGAGCTGCCGAGCGAGGCCATTCAGGCTTCCTTGACCTCCGACGATC
GCGCGCTTCAGGCCCTCATCGAGTCTCTGCCTGAGGCACCCGCCGCGGCT
CGTCGTCAGTGCCTCAAGATGTGTGGCCTGGACAATGGGGATGACGACCT
CAGCTACGACTACGGCTACGATTCCGACGGCACAAAGGACTTGGAGGATA
TCTAGGCTTCCTTGACCTCCGACGATCGCGCGCTTCAGGCCCTCATCGAG
TCTCTGCCTGAGGCACCCGCCGCGGCTCGTCGTCAGTGCCTCAAGATGTG
TGGCCTGGACAATGGGGATGACGACCTCAGCTACGACTACGGCTACGATT
CCGACGGCACAAAGGACTTGGAGGATATCTAG
back to top