mRNA_L-elsbetiae_contig12783.2232.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12783.2232.1
Unique NamemRNA_L-elsbetiae_contig12783.2232.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig12783.2232.1 vs. uniprot
Match: A0A6H5LKZ1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LKZ1_9PHAE)

HSP 1 Score: 160 bits (405), Expect = 4.430e-44
Identity = 79/88 (89.77%), Postives = 81/88 (92.05%), Query Frame = 1 
Query:    1 RFSAFIREQWAEGAGGLGNHMRVDGGVYAPWLKVYCGYLAARGLHLETATNAFRSWETLTSTRQLRNALTETNALLAAALALHFAGDA 264
            RFSAFI++QWAEGAG LG HMR DGGVYAPWLKVYCGYLA RGL LE ATNAFRSWETLTSTRQLRNALTETNALLA ALALHFAGDA
Sbjct:  323 RFSAFIKDQWAEGAGELGKHMRTDGGVYAPWLKVYCGYLATRGLRLEAATNAFRSWETLTSTRQLRNALTETNALLAGALALHFAGDA 410
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BLAST of mRNA_L-elsbetiae_contig12783.2232.1 vs. uniprot
Match: D8LLU9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLU9_ECTSI)

HSP 1 Score: 114 bits (285), Expect = 1.030e-31
Identity = 52/62 (83.87%), Postives = 55/62 (88.71%), Query Frame = 1 
Query:   16 IREQWAEGAGGLGNHMRVDGGVYAPWLKVYCGYLAARGLHLETATNAFRSWETLTSTRQLRN 201
            +++QWAEGAG LG HMR DGGVYAPWLKVYCGYLA RGL LE ATNAFRSWETLTS RQLRN
Sbjct:    1 MKDQWAEGAGELGKHMRTDGGVYAPWLKVYCGYLATRGLRLEAATNAFRSWETLTSIRQLRN 62
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12783.2232.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LKZ1_9PHAE4.430e-4489.77Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LLU9_ECTSI1.030e-3183.87Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12783contigL-elsbetiae_contig12783:1699..3189 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size264
Cds size264
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12783.2232.1prot_L-elsbetiae_contig12783.2232.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12783 1699..3189 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815465.3639312-CDS-L-elsbetiae_contig12783:1698..17971622815465.3639312-CDS-L-elsbetiae_contig12783:1698..1797Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12783 1699..1797 +
1691682911.075795-CDS-L-elsbetiae_contig12783:1698..17971691682911.075795-CDS-L-elsbetiae_contig12783:1698..1797Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12783 1699..1797 +
1622815465.378806-CDS-L-elsbetiae_contig12783:2696..27981622815465.378806-CDS-L-elsbetiae_contig12783:2696..2798Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12783 2697..2798 +
1691682911.0853348-CDS-L-elsbetiae_contig12783:2696..27981691682911.0853348-CDS-L-elsbetiae_contig12783:2696..2798Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12783 2697..2798 +
1622815465.3906138-CDS-L-elsbetiae_contig12783:3126..31891622815465.3906138-CDS-L-elsbetiae_contig12783:3126..3189Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12783 3127..3189 +
1691682911.093626-CDS-L-elsbetiae_contig12783:3126..31891691682911.093626-CDS-L-elsbetiae_contig12783:3126..3189Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12783 3127..3189 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12783.2232.1

>prot_L-elsbetiae_contig12783.2232.1 ID=prot_L-elsbetiae_contig12783.2232.1|Name=mRNA_L-elsbetiae_contig12783.2232.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=88bp
RFSAFIREQWAEGAGGLGNHMRVDGGVYAPWLKVYCGYLAARGLHLETAT
NAFRSWETLTSTRQLRNALTETNALLAAALALHFAGDA
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mRNA from alignment at L-elsbetiae_contig12783:1699..3189+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12783.2232.1 ID=mRNA_L-elsbetiae_contig12783.2232.1|Name=mRNA_L-elsbetiae_contig12783.2232.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1491bp|location=Sequence derived from alignment at L-elsbetiae_contig12783:1699..3189+ (Laminarionema elsbetiae ELsaHSoW15)
AGGTTCTCCGCCTTCATACGGGAGCAGTGGGCGGAGGGGGCCGGGGGGCT
CGGGAATCACATGCGGGTGGACGGCGGGGTGTACGCGCCTTGGCTCAAGG
TGGGGTGCAACTGGGGAAGCGGAGGGGGAGGGAGGGGGGGGGGGGATCGG
GGGGTCACGGTCTCTTGCTTGCTGAGTGACTTGTCCTGTCTTCTTCTTCT
TCTGTTTGGTGGCTTATTCTCTTTGGGGGCGACGATGCTTTTGTTCTGGC
CACGCACGGAACACACAAGCTCTCGCCGTTCCAACCTTCTTCTACCGTGA
AAATCGAATGACCAGGCAACACCGAATATATTTTTGAGATAGTTCCACCG
CCAAGAAAAATACACACATATTTATCCGACTTGGTGGGCCCCTCGCTCAA
GACAGAATACCGTCCCCCCCCCAACAACCCCCCCCCCCCCCGAACAAGAA
TATTTTTGGGCTGAAAAGTCAGGGGCCCCCGAATCTCCTTTTGTTCTGGA
GCGGAGCCGGTGCCTCATGCCTCTAAGCACGGTTTCTACCAACTATGTAG
GCAACATTAGTTACCCTCAAAGGCAACCACCACCGTGTACGACACAAGGT
AGCACACCCCTGGACCGATTTTCAAAAGCTCGGCTACTCCGCAACGAGTA
CGATTCTTCTGACACCAAAAATGACACGTTTTCGGGCAGCTCTTGGTGAG
ATCTTTTATCTTTCCAACGCCGCCCTTTTCGGGAAATCACGCTCTTCTCG
CTGTGGAGTGTACTTGAGGAGCTTTGATTGACCGGTCCAGGGGGTGTGTT
ATCTTGTGTCGTTACAGCAGTACATAGGTAACCCGTGAGTTTTTGTCCCC
CCGCCTGACCCACCGAATTCCACGCCGTATCCAACCCAACCCTTGTCCCC
GCTGCCCCATATCCCCATGGCTGCCGCTCTCCGCCGCCGCCGCCGCCGCC
GCCGCCGGCCCCCGCGGTCTCGGGCCCGCCCGCCCCCCGGCGCTCAAGGT
CTACTGCGGGTATCTAGCCGCACGGGGGCTGCACCTGGAGACCGCCACAA
ACGCCTTTCGGTCCTGGGAAACCCTCACCAGCACCCGGCAGCTACGCAAC
GTGAGCCCCCCCCCCCCCTGAAATCTTTTCCCGTGTACAAGTAGCTTATA
TACTCCCTTCTGGCCCGGAATATAAGCAAGGTTTGGATTTAGTTCCGTAT
AAGTCTACCTTTTTCGTTCTCCCATCCTTGATCTCAGCCCCCCCCCCCCC
CCCCCCTTACGCACTGTCTCTCATTCTCTTCCTCCTCCTCCTCCTCCTCC
TGTTATTCTGATGCATTCTGCTGCTTTGTTTTTGTTTCATTTTTGTTTTT
GATTTCACGCGCGTTGTTTTCGTGTTTTCCTCTTTGCGTTGCGCTGCGTT
GCGTTGCCCGCGCACGCCCCCCTCACAGGCCCTTACCGAGACGAACGCCC
TCCTCGCCGCGGCCCTCGCCCTACACTTCGCCGGCGACGCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12783:1699..3189+

>mRNA_L-elsbetiae_contig12783.2232.1 ID=mRNA_L-elsbetiae_contig12783.2232.1|Name=mRNA_L-elsbetiae_contig12783.2232.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=528bp|location=Sequence derived from alignment at L-elsbetiae_contig12783:1699..3189+ (Laminarionema elsbetiae ELsaHSoW15)
AGGTTCTCCGCCTTCATACGGGAGCAGTGGGCGGAGGGGGCCGGGGGGCT
CGGGAATCACATGCGGGTGGACGGCGGGGTGTACGCGCCTTGGCTCAAGA
GGTTCTCCGCCTTCATACGGGAGCAGTGGGCGGAGGGGGCCGGGGGGCTC
GGGAATCACATGCGGGTGGACGGCGGGGTGTACGCGCCTTGGCTCAAGGT
CTACTGCGGGTATCTAGCCGCACGGGGGCTGCACCTGGAGACCGCCACAA
ACGCCTTTCGGTCCTGGGAAACCCTCACCAGCACCCGGCAGCTACGCAAC
GTCTACTGCGGGTATCTAGCCGCACGGGGGCTGCACCTGGAGACCGCCAC
AAACGCCTTTCGGTCCTGGGAAACCCTCACCAGCACCCGGCAGCTACGCA
ACGCCCTTACCGAGACGAACGCCCTCCTCGCCGCGGCCCTCGCCCTACAC
TTCGCCGGCGACGCCGCCCTTACCGAGACGAACGCCCTCCTCGCCGCGGC
CCTCGCCCTACACTTCGCCGGCGACGCC
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