mRNA_L-elsbetiae_contig1278.2229.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1278.2229.1 vs. uniprot
Match: A0A6H5JD62_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JD62_9PHAE) HSP 1 Score: 199 bits (506), Expect = 3.700e-50 Identity = 301/450 (66.89%), Postives = 327/450 (72.67%), Query Frame = 2 Query: 1634 APRFSPG-FDVKSEESEIHHYAQAGDVEEVRRCLLAGLYQVDEVDGLGCTPVHLAGAMGHTSVVKLLVE-HGATVXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDPSARDANGMQARDMVGAGRRIPQGRRLDLVSMLERYQLGDYAMSRAPMSSTRSLHQLWRDRDTH------SNISFGSTPQRVEGLRMSSGPGXXXXXXXXXXXXXXXXXXXSASGTVRGGARFFGSTATFSRRDS-SFDGFPSGSFGSGAAAGEGGGAYPPGGASTMMPRGVAGEGXXXXXXXXXXXXXXXXXXXXXXXXHSPRWTMGAQVAGRLEELRARELAASLRSKVQENEAMKRYLESV 2956 A R P +VK EESEIHHYAQAGDVEEVRRCLLAG +VDEVD LGCTPVHLAGAMGHT+VVKLLVE H A V XXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX DPSA+DA+G QA DMVGAGRRIPQG + D+++ LERYQ+G+Y ++RAP+SSTRSL Q+WRDRD+ S GS P G G XXXXXXXXXXXXXXXXXXX + + SR+ S S DGF + S G+G GEGGG GA+ EG SPRWT+GA VAGRLE +RAREL ASLR+KVQENEAMKRY+ESV Sbjct: 66 ATRVPPSSLEVKVEESEIHHYAQAGDVEEVRRCLLAGFNKVDEVDELGCTPVHLAGAMGHTNVVKLLVEEHRAAVDARDXXXXXXXXXXXXXXXXXXXXXLLRLGAEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXADPSAKDAHGKQAVDMVGAGRRIPQGLKFDIINTLERYQMGEYGIARAPLSSTRSLRQIWRDRDSGESTPRASTARAGSLPSGAGG-EAGQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTIYSSRGGSISRKGSMSLDGFSTASMGAG---GEGGGPLSVRGAAMRHSSRGFSEGDGRGNGGG----------------RSPRWTVGAAVAGRLEGMRARELGASLRAKVQENEAMKRYVESV 495
BLAST of mRNA_L-elsbetiae_contig1278.2229.1 vs. uniprot
Match: D8LLZ4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LLZ4_ECTSI) HSP 1 Score: 159 bits (403), Expect = 7.170e-37 Identity = 147/260 (56.54%), Postives = 172/260 (66.15%), Query Frame = 2 Query: 2243 DPSARDANGMQARDMVGAGRRIPQGRRLDLVSMLERYQLGDYAMSRAPMSSTRSLHQLWRDRDTH------SNISFGSTPQRVEGLRMSSGPGXXXXXXXXXXXXXXXXXXXSASGTVRGGARFFGSTATFSRRDS-SFDGFPSGSFGSGAAAGEGGGAYPPGGASTMMPRGVAGEGXXXXXXXXXXXXXXXXXXXXXXXXHSPRWTMGAQVAGRLEELRARELAASLRSKVQENEAMKRYLESVKEEMRVLQRKLSRHS 3001 DPSA+DA+G QA DMVGAGRRIPQG R D+++ LERYQ+G+YA++RAP+SSTRSL Q+WRDRD+ S GS P G XXXXXXXXXXXXXXXXXXX + + SR+ S S DGF + S G+G GEGGG GA+ EG XXXXXXXXXXXXX SPRWT+GA VAGRLE +RAREL ASLR+KVQENEAMKRY+ESV EEMR LQ+K+S+ S Sbjct: 149 DPSAKDAHGKQAIDMVGAGRRIPQGLRFDIINTLERYQMGEYAIARAPLSSTRSLRQMWRDRDSGESTPRASTARAGSLPSSAVGGAGQGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXSTIYSSRGGSISRKGSMSLDGFSTASMGAG---GEGGGPLSVRGAAMRHSSRGFSEGDXXXXXXXXXXXXX----------RSPRWTVGAAVAGRLEGMRARELGASLRAKVQENEAMKRYVESVTEEMRALQQKISQQS 395 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1278.2229.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1278.2229.1 >prot_L-elsbetiae_contig1278.2229.1 ID=prot_L-elsbetiae_contig1278.2229.1|Name=mRNA_L-elsbetiae_contig1278.2229.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=828bp MSSGAERTLFPAREEATGGIIDQDEGRDLHQHPAAETPAAAAGGASRQDHback to top mRNA from alignment at L-elsbetiae_contig1278:5066..25438- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1278.2229.1 ID=mRNA_L-elsbetiae_contig1278.2229.1|Name=mRNA_L-elsbetiae_contig1278.2229.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=20373bp|location=Sequence derived from alignment at L-elsbetiae_contig1278:5066..25438- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1278:5066..25438- >mRNA_L-elsbetiae_contig1278.2229.1 ID=mRNA_L-elsbetiae_contig1278.2229.1|Name=mRNA_L-elsbetiae_contig1278.2229.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=4968bp|location=Sequence derived from alignment at L-elsbetiae_contig1278:5066..25438- (Laminarionema elsbetiae ELsaHSoW15)back to top |