mRNA_L-elsbetiae_contig12776.2228.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12776.2228.1
Unique NamemRNA_L-elsbetiae_contig12776.2228.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig12776.2228.1 vs. uniprot
Match: D7G3X6_ECTSI (MFS domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G3X6_ECTSI)

HSP 1 Score: 167 bits (423), Expect = 1.190e-50
Identity = 85/109 (77.98%), Postives = 97/109 (88.99%), Query Frame = 1
Query:    1 MYAWI-FFSRSRTFTLGLLTLVVVLLFADQNLLAPNLSAVAEEFGFDELEKDRRLGGDIAIAFFGFGAPASLLIGWLTDLVDRRNLFVAIVVVGELGALATVFVTTFSQ 324
            +++W+    RS  FTL LLTLVVVLLFADQNLLAPNLSA+AEEFGF+E EKDR LGGDIA+AFFGFGAPASLL+GWLTD++DRR LFVAIV +GE+G LATVFVTTFSQ
Sbjct:   32 VHSWLEMLRRSSMFTLALLTLVVVLLFADQNLLAPNLSAIAEEFGFNEEEKDRHLGGDIAVAFFGFGAPASLLVGWLTDVIDRRKLFVAIVAIGEMGTLATVFVTTFSQ 140          
BLAST of mRNA_L-elsbetiae_contig12776.2228.1 vs. uniprot
Match: A0A6H5KP69_9PHAE (MFS domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KP69_9PHAE)

HSP 1 Score: 165 bits (418), Expect = 2.470e-46
Identity = 84/109 (77.06%), Postives = 97/109 (88.99%), Query Frame = 1
Query:    1 MYAWI-FFSRSRTFTLGLLTLVVVLLFADQNLLAPNLSAVAEEFGFDELEKDRRLGGDIAIAFFGFGAPASLLIGWLTDLVDRRNLFVAIVVVGELGALATVFVTTFSQ 324
            +++W+    RS  FTL LLTLVVVLLFADQNLLAPNLSA+AEEFGF+E EKDR LGGDIA+AFFGFGAPAS+L+GWLTD++DRR LFVAIV +GE+G LATVFVTTFSQ
Sbjct:   32 VHSWLEILRRSSMFTLALLTLVVVLLFADQNLLAPNLSAIAEEFGFNEEEKDRHLGGDIAVAFFGFGAPASVLVGWLTDVIDRRKLFVAIVALGEMGTLATVFVTTFSQ 140          
BLAST of mRNA_L-elsbetiae_contig12776.2228.1 vs. uniprot
Match: A0A7S0X5V5_9CHLO (Hypothetical protein (Fragment) n=1 Tax=Mantoniella antarctica TaxID=81844 RepID=A0A7S0X5V5_9CHLO)

HSP 1 Score: 111 bits (277), Expect = 4.380e-27
Identity = 58/100 (58.00%), Postives = 76/100 (76.00%), Query Frame = 1
Query:   25 RSRTFTLGLLTLVVVLLFADQNLLAPNLSAVAEEFGFDELEKDRRLGGDIAIAFFGFGAPASLLIGWLTDLVDRRNLFVAIVVVGELGALATVFVTTFSQ 324
            R + +T+GLLTL  + L+ADQNLL+PNLSAVA++FGFDE EKD +LGG + +AFF  G+PASL+IGWL+D V R  LF   V++GE   LAT +V T+ Q
Sbjct:  127 RVKYYTVGLLTLTSMFLYADQNLLSPNLSAVADDFGFDEREKDLKLGGWLQLAFFCVGSPASLIIGWLSDKVPRMRLFFITVLLGEGPCLATYWVKTYWQ 226          
BLAST of mRNA_L-elsbetiae_contig12776.2228.1 vs. uniprot
Match: A0A7S2YGU5_9STRA (Hypothetical protein (Fragment) n=1 Tax=Amphiprora paludosa TaxID=265537 RepID=A0A7S2YGU5_9STRA)

HSP 1 Score: 107 bits (266), Expect = 7.300e-26
Identity = 56/100 (56.00%), Postives = 71/100 (71.00%), Query Frame = 1
Query:   25 RSRTFTLGLLTLVVVLLFADQNLLAPNLSAVAEEFGFDELEKDRRLGGDIAIAFFGFGAPASLLIGWLTDLVDRRNLFVAIVVVGELGALATVFVTTFSQ 324
            R+  + L L +L  +LLFADQNL+APNL+A+A EFGF E E+D +LGG I++AFF  GAPAS  IG+LTD  +R  LF   V +GEL  LAT FV T+ Q
Sbjct:  139 RTNAWALTLFSLSAILLFADQNLMAPNLTAIATEFGFSEQERDEKLGGHISLAFFCLGAPASFAIGYLTDSYNRSILFFVTVGLGELACLATYFVETYRQ 238          
BLAST of mRNA_L-elsbetiae_contig12776.2228.1 vs. uniprot
Match: A0A250XI72_9CHLO (MFS domain-containing protein n=1 Tax=Chlamydomonas eustigma TaxID=1157962 RepID=A0A250XI72_9CHLO)

HSP 1 Score: 108 bits (271), Expect = 1.950e-25
Identity = 59/103 (57.28%), Postives = 72/103 (69.90%), Query Frame = 1
Query:   19 FSRS-RTFTLGLLTLVVVLLFADQNLLAPNLSAVAEEFGFDELEKDRRLGGDIAIAFFGFGAPASLLIGWLTDLVDRRNLFVAIVVVGELGALATVFVTTFSQ 324
            FSR  R +T GL TL+ VLLFADQNLLAPNLSA A  F   E +KD  LGG I+ AFF  GAPA+LL+GW TD V+RRNL  A+ + G+   + T+FVT + Q
Sbjct:   65 FSRGQRYYTTGLFTLMAVLLFADQNLLAPNLSAAAAFFNMSETQKDIFLGGYISAAFFAVGAPAALLVGWYTDKVNRRNLLFAVAIFGQAPNMCTIFVTEYWQ 167          
BLAST of mRNA_L-elsbetiae_contig12776.2228.1 vs. uniprot
Match: A0A2P6VRC8_9CHLO (MFS family transporter: sugar n=1 Tax=Micractinium conductrix TaxID=554055 RepID=A0A2P6VRC8_9CHLO)

HSP 1 Score: 107 bits (266), Expect = 1.050e-24
Identity = 54/101 (53.47%), Postives = 72/101 (71.29%), Query Frame = 1
Query:   22 SRSRTFTLGLLTLVVVLLFADQNLLAPNLSAVAEEFGFDELEKDRRLGGDIAIAFFGFGAPASLLIGWLTDLVDRRNLFVAIVVVGELGALATVFVTTFSQ 324
             R R   + L +L   LL+ADQNL+APNL+A+A +FGFDE ++DR LGG IA AF+  GAPA+LL GWL+D V+R+ L  A VV+GE   + T+FVT + Q
Sbjct:  123 KRERMVMVSLFSLTAALLYADQNLMAPNLTAIATDFGFDEAQRDRMLGGVIAAAFYLVGAPAALLFGWLSDHVNRKRLLFAAVVLGEGPCMLTIFVTNYWQ 223          
BLAST of mRNA_L-elsbetiae_contig12776.2228.1 vs. uniprot
Match: C1E4Y5_MICCC (Major facilitator superfamily n=1 Tax=Micromonas commoda (strain RCC299 / NOUM17 / CCMP2709) TaxID=296587 RepID=C1E4Y5_MICCC)

HSP 1 Score: 105 bits (263), Expect = 1.480e-24
Identity = 57/102 (55.88%), Postives = 72/102 (70.59%), Query Frame = 1
Query:   22 SRSRTFTLGLLTLVVVLLFADQNLLAPNLSAVAEEFGFDELEKDRRLGGDIAIAFFGFGAPASLLIGWLTDL-VDRRNLFVAIVVVGELGALATVFVTTFSQ 324
             R + +T+GLLTL   +L+ADQNLLAPNLS  AEEFGF E EKD +LGG + +AFF  G+PASL+IGWL D  + R  LF   V++GE   LAT +V T+ Q
Sbjct:    3 KREKWYTVGLLTLTAAMLYADQNLLAPNLSQAAEEFGFSEREKDVKLGGWLQLAFFVVGSPASLVIGWLADKPIPRTRLFFLTVLIGEGPCLATYWVKTYWQ 104          
BLAST of mRNA_L-elsbetiae_contig12776.2228.1 vs. uniprot
Match: A0A7S0V9L3_9CRYP (Hypothetical protein (Fragment) n=1 Tax=Hemiselmis tepida TaxID=464990 RepID=A0A7S0V9L3_9CRYP)

HSP 1 Score: 105 bits (263), Expect = 1.590e-24
Identity = 54/99 (54.55%), Postives = 72/99 (72.73%), Query Frame = 1
Query:   22 SRSRTFTLGLLTLVVVLLFADQNLLAPNLSAVAEEFGFDELEKDRRLGGDIAIAFFGFGAPASLLIGWLTDLVDRRNLFVAIVVVGELGALATVFVTTF 318
             R    TL  LT+    LFADQN++APNL+A+A EFGF + E+D +LGG+I+ AFF  G P +LL+GWLTDLV+R+ LFVA++ +G   ALAT+ VT F
Sbjct:   40 QRGTVITLCALTMF---LFADQNIMAPNLTAIAHEFGFSDRERDAKLGGEISFAFFVMGGPVALLVGWLTDLVERKVLFVALLFLGLCPALATILVTEF 135          
BLAST of mRNA_L-elsbetiae_contig12776.2228.1 vs. uniprot
Match: A0A7S0I902_MICPS (Hypothetical protein n=1 Tax=Micromonas pusilla TaxID=38833 RepID=A0A7S0I902_MICPS)

HSP 1 Score: 105 bits (263), Expect = 2.510e-24
Identity = 57/102 (55.88%), Postives = 72/102 (70.59%), Query Frame = 1
Query:   22 SRSRTFTLGLLTLVVVLLFADQNLLAPNLSAVAEEFGFDELEKDRRLGGDIAIAFFGFGAPASLLIGWLTDL-VDRRNLFVAIVVVGELGALATVFVTTFSQ 324
             R + +T+GLLTL   +L+ADQNLLAPNLS  AEEFGF E EKD +LGG + +AFF  G+PASL+IGWL D  + R  LF   V++GE   LAT +V T+ Q
Sbjct:   62 KREKWYTVGLLTLTAAMLYADQNLLAPNLSQAAEEFGFSEREKDVKLGGWLQLAFFVVGSPASLVIGWLADKPIPRTRLFFLTVLIGEGPCLATYWVKTYWQ 163          
BLAST of mRNA_L-elsbetiae_contig12776.2228.1 vs. uniprot
Match: A0A1Z5KAQ2_FISSO (MFS domain-containing protein n=2 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5KAQ2_FISSO)

HSP 1 Score: 105 bits (263), Expect = 2.550e-24
Identity = 51/101 (50.50%), Postives = 74/101 (73.27%), Query Frame = 1
Query:   22 SRSRTFTLGLLTLVVVLLFADQNLLAPNLSAVAEEFGFDELEKDRRLGGDIAIAFFGFGAPASLLIGWLTDLVDRRNLFVAIVVVGELGALATVFVTTFSQ 324
            S  +   + L ++  +LLFADQNL++PNL+A+A+EF FD+ ++D++LGG+IA+AFF  GAPAS L+G L D  +R  LF A V +GELG + T +V T+SQ
Sbjct:   78 SMDKARAVALFSVCTILLFADQNLMSPNLTAIAKEFNFDDEQRDKKLGGEIALAFFVLGAPASYLVGCLGDAYNRTKLFAATVCIGELGCILTYWVQTYSQ 178          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12776.2228.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G3X6_ECTSI1.190e-5077.98MFS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5KP69_9PHAE2.470e-4677.06MFS domain-containing protein n=1 Tax=Ectocarpus s... [more]
A0A7S0X5V5_9CHLO4.380e-2758.00Hypothetical protein (Fragment) n=1 Tax=Mantoniell... [more]
A0A7S2YGU5_9STRA7.300e-2656.00Hypothetical protein (Fragment) n=1 Tax=Amphiprora... [more]
A0A250XI72_9CHLO1.950e-2557.28MFS domain-containing protein n=1 Tax=Chlamydomona... [more]
A0A2P6VRC8_9CHLO1.050e-2453.47MFS family transporter: sugar n=1 Tax=Micractinium... [more]
C1E4Y5_MICCC1.480e-2455.88Major facilitator superfamily n=1 Tax=Micromonas c... [more]
A0A7S0V9L3_9CRYP1.590e-2454.55Hypothetical protein (Fragment) n=1 Tax=Hemiselmis... [more]
A0A7S0I902_MICPS2.510e-2455.88Hypothetical protein n=1 Tax=Micromonas pusilla Ta... [more]
A0A1Z5KAQ2_FISSO2.550e-2450.50MFS domain-containing protein n=2 Tax=Fistulifera ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12776contigL-elsbetiae_contig12776:4281..5149 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeViridiplantae
Seed ortholog score108.2
Seed ortholog evalue2.5e-21
Seed eggNOG ortholog296587.XP_002501947.1
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Sugar (and other) transporter
EggNOG OGs34K9Z@3041,37M2K@33090,COG0477@1,KOG1330@2759
COG Functional cat.G
Best tax levelChlorophyta
Best eggNOG OGNA|NA|NA
Exons2
Model size333
Cds size333
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815464.9233809-CDS-L-elsbetiae_contig12776:4280..44741622815464.9233809-CDS-L-elsbetiae_contig12776:4280..4474Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12776 4281..4474 -
1691682910.8290007-CDS-L-elsbetiae_contig12776:4280..44741691682910.8290007-CDS-L-elsbetiae_contig12776:4280..4474Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12776 4281..4474 -
1622815464.9351385-CDS-L-elsbetiae_contig12776:5010..51491622815464.9351385-CDS-L-elsbetiae_contig12776:5010..5149Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12776 5011..5149 -
1691682910.8432581-CDS-L-elsbetiae_contig12776:5010..51491691682910.8432581-CDS-L-elsbetiae_contig12776:5010..5149Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12776 5011..5149 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12776.2228.1prot_L-elsbetiae_contig12776.2228.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12776 4281..5149 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12776.2228.1

>prot_L-elsbetiae_contig12776.2228.1 ID=prot_L-elsbetiae_contig12776.2228.1|Name=mRNA_L-elsbetiae_contig12776.2228.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=111bp
MYAWIFFSRSRTFTLGLLTLVVVLLFADQNLLAPNLSAVAEEFGFDELEK
DRRLGGDIAIAFFGFGAPASLLIGWLTDLVDRRNLFVAIVVVGELGALAT
VFVTTFSQAS*
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mRNA from alignment at L-elsbetiae_contig12776:4281..5149-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12776.2228.1 ID=mRNA_L-elsbetiae_contig12776.2228.1|Name=mRNA_L-elsbetiae_contig12776.2228.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=869bp|location=Sequence derived from alignment at L-elsbetiae_contig12776:4281..5149- (Laminarionema elsbetiae ELsaHSoW15)
ATGTATGCTTGGATATTTTTCTCTAGGTCGAGGACGTTTACTCTGGGTCT GTTGACGCTGGTGGTGGTGCTGCTGTTCGCCGACCAGAACCTTCTCGCTC CCAACCTATCGGCGGTCGCGGAGGAGTTCGGGTTTGATGGTGGGTTGTGT TTCGTCATTTGTTTTCCGTGGTTTTTTTCCACAAGTTTCTAAGGAAACGG GCAAGTACGGAGCTCCGGGCCACGCAGAGTACACTGGCGTTTAATGCCGG TGTGGTTGGTGTGTGGGGGTGACCCTTGCGGCTGAAACTTCTCACGGAGA CAGAAACTGCCGTCCCCGGCATGCACTCGAGCAGGAAACCCTTGCCGCAC AGGATTAACGCCTCCTTTGAAAACTTGGGGTGTGTCTTGCTCCTTCCAGA GAGCGTCGAGGACCGCTTGTCAGTGCTTGAGTTCACAGCAGGTATAGCCT ATGTTTGACACCTAGGCTCGTGCCACACGGCCTCACCTTAATCGTGCATC ACACCCTGCCATGTTACTTTCCAGCATCGACCATCCAGCATCGCTCCCCT ATGTTGTATGGTACATACATACCTACGATATCGACGGCCACGCTTGTGTA CGTCGTCCGCACTTTCTCGTTGAACTCCAATAACACCACCACCACCACCA CCACCACACCCACAACGGCAACCAGAGCTGGAAAAGGACAGACGCCTGGG CGGCGACATCGCCATCGCCTTCTTCGGCTTCGGCGCCCCTGCGTCGCTCC TGATCGGCTGGCTCACGGACCTCGTCGACAGGCGCAACCTCTTCGTGGCC ATCGTCGTGGTAGGGGAGCTCGGCGCGCTGGCGACGGTCTTCGTGACCAC CTTTTCTCAGGCAAGTTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12776:4281..5149-

>mRNA_L-elsbetiae_contig12776.2228.1 ID=mRNA_L-elsbetiae_contig12776.2228.1|Name=mRNA_L-elsbetiae_contig12776.2228.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=666bp|location=Sequence derived from alignment at L-elsbetiae_contig12776:4281..5149- (Laminarionema elsbetiae ELsaHSoW15)
ATGTATGCTTGGATATTTTTCTCTAGGTCGAGGACGTTTACTCTGGGTCT
GTTGACGCTGGTGGTGGTGCTGCTGTTCGCCGACCAGAACCTTCTCGCTC
CCAACCTATCGGCGGTCGCGGAGGAGTTCGGGTTTGATGATGTATGCTTG
GATATTTTTCTCTAGGTCGAGGACGTTTACTCTGGGTCTGTTGACGCTGG
TGGTGGTGCTGCTGTTCGCCGACCAGAACCTTCTCGCTCCCAACCTATCG
GCGGTCGCGGAGGAGTTCGGGTTTGATGAGCTGGAAAAGGACAGACGCCT
GGGCGGCGACATCGCCATCGCCTTCTTCGGCTTCGGCGCCCCTGCGTCGC
TCCTGATCGGCTGGCTCACGGACCTCGTCGACAGGCGCAACCTCTTCGTG
GCCATCGTCGTGGTAGGGGAGCTCGGCGCGCTGGCGACGGTCTTCGTGAC
CACCTTTTCTCAGGCAAGTTGAAGCTGGAAAAGGACAGACGCCTGGGCGG
CGACATCGCCATCGCCTTCTTCGGCTTCGGCGCCCCTGCGTCGCTCCTGA
TCGGCTGGCTCACGGACCTCGTCGACAGGCGCAACCTCTTCGTGGCCATC
GTCGTGGTAGGGGAGCTCGGCGCGCTGGCGACGGTCTTCGTGACCACCTT
TTCTCAGGCAAGTTGA
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