mRNA_L-elsbetiae_contig12774.2226.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig12774.2226.1 vs. uniprot
Match: A0A6H5J939_9PHAE (RRM domain-containing protein (Fragment) n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J939_9PHAE) HSP 1 Score: 216 bits (550), Expect = 1.910e-68 Identity = 126/142 (88.73%), Postives = 136/142 (95.77%), Query Frame = 2 Query: 2 GMDDPDDEEQRLEGLQQIISNSTANAXXXXXXXXXXXXXXXXXTAETAANPDDSSVYVGQVDYDATPDELQSHFEACGTINRVTILCDKFSGRPKGYAYIEFADKDGAENALALDGSPFKGRNLKVTPKRTNVPGLAARGGR 427 GM+DPDDEE++LEGLQQIIS+STA+AXXXXXXXXXXXXXXXXX A++ PD+SSVYVGQVDYDATPDELQSHFEACGTINRVTILCDKFSGRPKGYAYIEFADKDG+ENALALD SPFKGRNLKVTPKRTNVPGL+ RGGR Sbjct: 72 GMEDPDDEEEKLEGLQQIISDSTAHAXXXXXXXXXXXXXXXXXAAKS---PDESSVYVGQVDYDATPDELQSHFEACGTINRVTILCDKFSGRPKGYAYIEFADKDGSENALALDNSPFKGRNLKVTPKRTNVPGLSMRGGR 210
BLAST of mRNA_L-elsbetiae_contig12774.2226.1 vs. uniprot
Match: A0A7S3XQ96_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XQ96_HETAK) HSP 1 Score: 142 bits (359), Expect = 5.670e-41 Identity = 65/92 (70.65%), Postives = 79/92 (85.87%), Query Frame = 2 Query: 134 AETAANPDDSSVYVGQVDYDATPDELQSHFEACGTINRVTILCDKFSGRPKGYAYIEFADKDGAENALALDGSPFKGRNLKVTPKRTNVPGL 409 AE A D++SVYVGQVDY+A+P+ELQ+HF++CGTINRVTILCDKF+GRPKGYAY+EF +K+ ENAL L S FKGR LKVTPKR N+PG+ Sbjct: 30 AELVAGLDETSVYVGQVDYEASPEELQAHFQSCGTINRVTILCDKFTGRPKGYAYVEFLEKESVENALLLHDSLFKGRQLKVTPKRHNLPGM 121
BLAST of mRNA_L-elsbetiae_contig12774.2226.1 vs. uniprot
Match: A0A1X2ILT2_9FUNG (RRM domain-containing protein n=1 Tax=Absidia repens TaxID=90262 RepID=A0A1X2ILT2_9FUNG) HSP 1 Score: 142 bits (358), Expect = 5.630e-40 Identity = 68/98 (69.39%), Postives = 79/98 (80.61%), Query Frame = 2 Query: 131 TAETAANPDDSSVYVGQVDYDATPDELQSHFEACGTINRVTILCDKFSGRPKGYAYIEFADKDGAENALALDGSPFKGRNLKVTPKRTNVPGLAARGG 424 T E D SVYVGQVDY ATP+ELQ+HF++CGTINRVTILCDKF+G PKGYAY+EFA+ NA+AL+ S F+GR LKVTPKRTNVPG A+RGG Sbjct: 66 TEEDKEAVDSRSVYVGQVDYGATPEELQAHFQSCGTINRVTILCDKFTGHPKGYAYVEFAEPSFVSNAVALNESLFRGRLLKVTPKRTNVPGFASRGG 163
BLAST of mRNA_L-elsbetiae_contig12774.2226.1 vs. uniprot
Match: A0A7S2V693_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V693_9STRA) HSP 1 Score: 137 bits (346), Expect = 2.570e-39 Identity = 63/88 (71.59%), Postives = 76/88 (86.36%), Query Frame = 2 Query: 146 ANPDDSSVYVGQVDYDATPDELQSHFEACGTINRVTILCDKFSGRPKGYAYIEFADKDGAENALALDGSPFKGRNLKVTPKRTNVPGL 409 A +D+S+YVGQVDY+ATP+ELQ+HF +CGTINRVTILC+KF+ RPKGYAYIEF +K+ ENAL L+ S FKGR LKV+PKR NVPGL Sbjct: 16 AGMEDNSIYVGQVDYEATPEELQAHFASCGTINRVTILCNKFTSRPKGYAYIEFLEKESVENALLLNESLFKGRQLKVSPKRVNVPGL 103
BLAST of mRNA_L-elsbetiae_contig12774.2226.1 vs. uniprot
Match: UPI001E1D9E59 (polyadenylate-binding protein 2-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D9E59) HSP 1 Score: 141 bits (355), Expect = 5.300e-39 Identity = 76/156 (48.72%), Postives = 96/156 (61.54%), Query Frame = 2 Query: 2 GMDDPDDEEQRLEGLQQIISN--STANAXXXXXXXXXXXXXXXXXTAET------------AANPDDSSVYVGQVDYDATPDELQSHFEACGTINRVTILCDKFSGRPKGYAYIEFADKDGAENALALDGSPFKGRNLKVTPKRTNVPGLAARGGR 427 G DDP+D + LE +++ + ANA A+ +A D S+YVG VDY ATP+ELQ+HF CGTINRVTI+C+K +G PKG+AYIEF D+D +NA+ L+ SPF+GR LKVTPKRTNVPGLA RGGR Sbjct: 55 GEDDPEDVDAELEAMKKRLKEMEDEANAVKAAGAGGTDGTSAATGRADRMGEDYGASLIGPSAESDARSIYVGNVDYAATPEELQAHFADCGTINRVTIMCNKATGTPKGFAYIEFVDQDAVKNAVILNESPFRGRALKVTPKRTNVPGLAVRGGR 210
BLAST of mRNA_L-elsbetiae_contig12774.2226.1 vs. uniprot
Match: A0A1X2GEA8_9FUNG (RNA-binding domain-containing protein n=1 Tax=Hesseltinella vesiculosa TaxID=101127 RepID=A0A1X2GEA8_9FUNG) HSP 1 Score: 139 bits (350), Expect = 1.280e-38 Identity = 65/89 (73.03%), Postives = 76/89 (85.39%), Query Frame = 2 Query: 155 DDSSVYVGQVDYDATPDELQSHFEACGTINRVTILCDKFSGRPKGYAYIEFADKDGAENALALDGSPFKGRNLKVTPKRTNVPGLAARG 421 D SVYVGQVDY A+P+ELQ+HF++CGTINRVTILCDKF+G PKGYAYIEFA+ NA++L+ S F+GR LKVTPKRTNVPG AARG Sbjct: 77 DSRSVYVGQVDYGASPEELQAHFQSCGTINRVTILCDKFTGHPKGYAYIEFAESSFVNNAVSLNESLFRGRLLKVTPKRTNVPGFAARG 165
BLAST of mRNA_L-elsbetiae_contig12774.2226.1 vs. uniprot
Match: A0A1Y2IDG2_PYCCO (Polyadenylate-binding protein 2 n=1 Tax=Trametes coccinea BRFM310 TaxID=1353009 RepID=A0A1Y2IDG2_PYCCO) HSP 1 Score: 139 bits (349), Expect = 1.530e-38 Identity = 63/97 (64.95%), Postives = 77/97 (79.38%), Query Frame = 2 Query: 131 TAETAANPDDSSVYVGQVDYDATPDELQSHFEACGTINRVTILCDKFSGRPKGYAYIEFADKDGAENALALDGSPFKGRNLKVTPKRTNVPGLAARG 421 T E A D S+YVG VDY ATP+E+Q HF+ACGTINRVTILCDKF+G PKGYAY+EF++ + + ALA+D S F+GR +KVTPKRTN+PG ARG Sbjct: 69 TEEEKAAVDSRSIYVGNVDYSATPEEIQQHFQACGTINRVTILCDKFTGHPKGYAYVEFSEPEHVDAALAMDNSLFRGRLIKVTPKRTNIPGFNARG 165
BLAST of mRNA_L-elsbetiae_contig12774.2226.1 vs. uniprot
Match: A0A163JZ81_ABSGL (Uncharacterized protein n=1 Tax=Absidia glauca TaxID=4829 RepID=A0A163JZ81_ABSGL) HSP 1 Score: 142 bits (357), Expect = 1.550e-38 Identity = 66/90 (73.33%), Postives = 77/90 (85.56%), Query Frame = 2 Query: 155 DDSSVYVGQVDYDATPDELQSHFEACGTINRVTILCDKFSGRPKGYAYIEFADKDGAENALALDGSPFKGRNLKVTPKRTNVPGLAARGG 424 D SVYVGQVDY ATP+ELQ+HF++CGTINRVTILCDKF+G PKGYAY+EFA+ NA+AL+ S F+GR LKVTPKRTNVPG A+RGG Sbjct: 176 DSRSVYVGQVDYGATPEELQAHFQSCGTINRVTILCDKFTGHPKGYAYVEFAEPSFVSNAVALNESLFRGRLLKVTPKRTNVPGFASRGG 265
BLAST of mRNA_L-elsbetiae_contig12774.2226.1 vs. uniprot
Match: A0A4Q9P6U8_9APHY (RRM domain-containing protein n=4 Tax=Dichomitus squalens TaxID=114155 RepID=A0A4Q9P6U8_9APHY) HSP 1 Score: 139 bits (349), Expect = 1.620e-38 Identity = 64/97 (65.98%), Postives = 77/97 (79.38%), Query Frame = 2 Query: 131 TAETAANPDDSSVYVGQVDYDATPDELQSHFEACGTINRVTILCDKFSGRPKGYAYIEFADKDGAENALALDGSPFKGRNLKVTPKRTNVPGLAARG 421 T E A D S+YVG VDY ATP+E+Q HF+ACGTINRVTILCDKF+G PKGYAY+EFA+ + + ALA+D S F+GR +KVTPKRTN+PG ARG Sbjct: 71 TEEDKAAADARSIYVGNVDYSATPEEIQQHFQACGTINRVTILCDKFTGHPKGYAYVEFAEPEFIDAALAMDNSLFRGRLIKVTPKRTNIPGFNARG 167
BLAST of mRNA_L-elsbetiae_contig12774.2226.1 vs. uniprot
Match: A0A0D2ML37_HYPSF (RRM domain-containing protein n=1 Tax=Hypholoma sublateritium (strain FD-334 SS-4) TaxID=945553 RepID=A0A0D2ML37_HYPSF) HSP 1 Score: 138 bits (348), Expect = 2.040e-38 Identity = 65/97 (67.01%), Postives = 77/97 (79.38%), Query Frame = 2 Query: 131 TAETAANPDDSSVYVGQVDYDATPDELQSHFEACGTINRVTILCDKFSGRPKGYAYIEFADKDGAENALALDGSPFKGRNLKVTPKRTNVPGLAARG 421 T E AN D SVYVG VDY ATP+E+Q HF+ACGTINRVTILCDKF+G PKGYAY+EF++ + + A+ALD S F+GR +KVT KRTNVPG ARG Sbjct: 69 TDEDKANTDSRSVYVGNVDYGATPEEIQGHFQACGTINRVTILCDKFTGHPKGYAYVEFSEPEHIDAAVALDNSLFRGRLIKVTAKRTNVPGFNARG 165 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12774.2226.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig12774.2226.1 >prot_L-elsbetiae_contig12774.2226.1 ID=prot_L-elsbetiae_contig12774.2226.1|Name=mRNA_L-elsbetiae_contig12774.2226.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=157bp MDDPDDEEQRLEGLQQIISNSTANASAAAAAAAAAAAAAAAVTAETAANPback to top mRNA from alignment at L-elsbetiae_contig12774:676..3411+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig12774.2226.1 ID=mRNA_L-elsbetiae_contig12774.2226.1|Name=mRNA_L-elsbetiae_contig12774.2226.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2736bp|location=Sequence derived from alignment at L-elsbetiae_contig12774:676..3411+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig12774:676..3411+ >mRNA_L-elsbetiae_contig12774.2226.1 ID=mRNA_L-elsbetiae_contig12774.2226.1|Name=mRNA_L-elsbetiae_contig12774.2226.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=942bp|location=Sequence derived from alignment at L-elsbetiae_contig12774:676..3411+ (Laminarionema elsbetiae ELsaHSoW15)back to top |