prot_L-elsbetiae_contig12774.2226.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview


Name	mRNA_L-elsbetiae_contig12774.2226.1
Unique Name	prot_L-elsbetiae_contig12774.2226.1
Type	polypeptide
Organism	Laminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length	157

Homology

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BLAST of mRNA_L-elsbetiae_contig12774.2226.1 vs. uniprot
Match: A0A6H5J939_9PHAE (RRM domain-containing protein (Fragment) n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5J939_9PHAE)

HSP 1 Score: 213 bits (543), Expect = 2.120e-67
Identity = 125/141 (88.65%), Postives = 135/141 (95.74%), Query Frame = 0

Query:    1 MDDPDDEEQRLEGLQQIISNSTANAXXXXXXXXXXXXXXXXXTAETAANPDDSSVYVGQVDYDATPDELQSHFEACGTINRVTILCDKFSGRPKGYAYIEFADKDGAENALALDGSPFKGRNLKVTPKRTNVPGLAARGGR 141
            M+DPDDEE++LEGLQQIIS+STA+AXXXXXXXXXXXXXXXXX A++   PD+SSVYVGQVDYDATPDELQSHFEACGTINRVTILCDKFSGRPKGYAYIEFADKDG+ENALALD SPFKGRNLKVTPKRTNVPGL+ RGGR
Sbjct:   73 MEDPDDEEEKLEGLQQIISDSTAHAXXXXXXXXXXXXXXXXXAAKS---PDESSVYVGQVDYDATPDELQSHFEACGTINRVTILCDKFSGRPKGYAYIEFADKDGSENALALDNSPFKGRNLKVTPKRTNVPGLSMRGGR 210

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BLAST of mRNA_L-elsbetiae_contig12774.2226.1 vs. uniprot
Match: A0A7S3XQ96_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XQ96_HETAK)

HSP 1 Score: 142 bits (359), Expect = 5.460e-41
Identity = 65/92 (70.65%), Postives = 79/92 (85.87%), Query Frame = 0

Query:   44 AETAANPDDSSVYVGQVDYDATPDELQSHFEACGTINRVTILCDKFSGRPKGYAYIEFADKDGAENALALDGSPFKGRNLKVTPKRTNVPGL 135
            AE  A  D++SVYVGQVDY+A+P+ELQ+HF++CGTINRVTILCDKF+GRPKGYAY+EF +K+  ENAL L  S FKGR LKVTPKR N+PG+
Sbjct:   30 AELVAGLDETSVYVGQVDYEASPEELQAHFQSCGTINRVTILCDKFTGRPKGYAYVEFLEKESVENALLLHDSLFKGRQLKVTPKRHNLPGM 121

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BLAST of mRNA_L-elsbetiae_contig12774.2226.1 vs. uniprot
Match: A0A1X2ILT2_9FUNG (RRM domain-containing protein n=1 Tax=Absidia repens TaxID=90262 RepID=A0A1X2ILT2_9FUNG)

HSP 1 Score: 142 bits (358), Expect = 5.430e-40
Identity = 68/98 (69.39%), Postives = 79/98 (80.61%), Query Frame = 0

Query:   43 TAETAANPDDSSVYVGQVDYDATPDELQSHFEACGTINRVTILCDKFSGRPKGYAYIEFADKDGAENALALDGSPFKGRNLKVTPKRTNVPGLAARGG 140
            T E     D  SVYVGQVDY ATP+ELQ+HF++CGTINRVTILCDKF+G PKGYAY+EFA+     NA+AL+ S F+GR LKVTPKRTNVPG A+RGG
Sbjct:   66 TEEDKEAVDSRSVYVGQVDYGATPEELQAHFQSCGTINRVTILCDKFTGHPKGYAYVEFAEPSFVSNAVALNESLFRGRLLKVTPKRTNVPGFASRGG 163

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BLAST of mRNA_L-elsbetiae_contig12774.2226.1 vs. uniprot
Match: A0A7S2V693_9STRA (Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V693_9STRA)

HSP 1 Score: 137 bits (346), Expect = 2.470e-39
Identity = 63/88 (71.59%), Postives = 76/88 (86.36%), Query Frame = 0

Query:   48 ANPDDSSVYVGQVDYDATPDELQSHFEACGTINRVTILCDKFSGRPKGYAYIEFADKDGAENALALDGSPFKGRNLKVTPKRTNVPGL 135
            A  +D+S+YVGQVDY+ATP+ELQ+HF +CGTINRVTILC+KF+ RPKGYAYIEF +K+  ENAL L+ S FKGR LKV+PKR NVPGL
Sbjct:   16 AGMEDNSIYVGQVDYEATPEELQAHFASCGTINRVTILCNKFTSRPKGYAYIEFLEKESVENALLLNESLFKGRQLKVSPKRVNVPGL 103

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BLAST of mRNA_L-elsbetiae_contig12774.2226.1 vs. uniprot
Match: A0A1X2GEA8_9FUNG (RNA-binding domain-containing protein n=1 Tax=Hesseltinella vesiculosa TaxID=101127 RepID=A0A1X2GEA8_9FUNG)

HSP 1 Score: 139 bits (350), Expect = 1.230e-38
Identity = 65/89 (73.03%), Postives = 76/89 (85.39%), Query Frame = 0

Query:   51 DDSSVYVGQVDYDATPDELQSHFEACGTINRVTILCDKFSGRPKGYAYIEFADKDGAENALALDGSPFKGRNLKVTPKRTNVPGLAARG 139
            D  SVYVGQVDY A+P+ELQ+HF++CGTINRVTILCDKF+G PKGYAYIEFA+     NA++L+ S F+GR LKVTPKRTNVPG AARG
Sbjct:   77 DSRSVYVGQVDYGASPEELQAHFQSCGTINRVTILCDKFTGHPKGYAYIEFAESSFVNNAVSLNESLFRGRLLKVTPKRTNVPGFAARG 165

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BLAST of mRNA_L-elsbetiae_contig12774.2226.1 vs. uniprot
Match: UPI001E1D9E59 (polyadenylate-binding protein 2-like n=1 Tax=Mercenaria mercenaria TaxID=6596 RepID=UPI001E1D9E59)

HSP 1 Score: 140 bits (352), Expect = 1.450e-38
Identity = 65/95 (68.42%), Postives = 78/95 (82.11%), Query Frame = 0

Query:   47 AANPDDSSVYVGQVDYDATPDELQSHFEACGTINRVTILCDKFSGRPKGYAYIEFADKDGAENALALDGSPFKGRNLKVTPKRTNVPGLAARGGR 141
            +A  D  S+YVG VDY ATP+ELQ+HF  CGTINRVTI+C+K +G PKG+AYIEF D+D  +NA+ L+ SPF+GR LKVTPKRTNVPGLA RGGR
Sbjct:  116 SAESDARSIYVGNVDYAATPEELQAHFADCGTINRVTIMCNKATGTPKGFAYIEFVDQDAVKNAVILNESPFRGRALKVTPKRTNVPGLAVRGGR 210

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BLAST of mRNA_L-elsbetiae_contig12774.2226.1 vs. uniprot
Match: A0A1Y2IDG2_PYCCO (Polyadenylate-binding protein 2 n=1 Tax=Trametes coccinea BRFM310 TaxID=1353009 RepID=A0A1Y2IDG2_PYCCO)

HSP 1 Score: 139 bits (349), Expect = 1.470e-38
Identity = 63/97 (64.95%), Postives = 77/97 (79.38%), Query Frame = 0

Query:   43 TAETAANPDDSSVYVGQVDYDATPDELQSHFEACGTINRVTILCDKFSGRPKGYAYIEFADKDGAENALALDGSPFKGRNLKVTPKRTNVPGLAARG 139
            T E  A  D  S+YVG VDY ATP+E+Q HF+ACGTINRVTILCDKF+G PKGYAY+EF++ +  + ALA+D S F+GR +KVTPKRTN+PG  ARG
Sbjct:   69 TEEEKAAVDSRSIYVGNVDYSATPEEIQQHFQACGTINRVTILCDKFTGHPKGYAYVEFSEPEHVDAALAMDNSLFRGRLIKVTPKRTNIPGFNARG 165

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BLAST of mRNA_L-elsbetiae_contig12774.2226.1 vs. uniprot
Match: A0A163JZ81_ABSGL (Uncharacterized protein n=1 Tax=Absidia glauca TaxID=4829 RepID=A0A163JZ81_ABSGL)

HSP 1 Score: 142 bits (357), Expect = 1.490e-38
Identity = 66/90 (73.33%), Postives = 77/90 (85.56%), Query Frame = 0

Query:   51 DDSSVYVGQVDYDATPDELQSHFEACGTINRVTILCDKFSGRPKGYAYIEFADKDGAENALALDGSPFKGRNLKVTPKRTNVPGLAARGG 140
            D  SVYVGQVDY ATP+ELQ+HF++CGTINRVTILCDKF+G PKGYAY+EFA+     NA+AL+ S F+GR LKVTPKRTNVPG A+RGG
Sbjct:  176 DSRSVYVGQVDYGATPEELQAHFQSCGTINRVTILCDKFTGHPKGYAYVEFAEPSFVSNAVALNESLFRGRLLKVTPKRTNVPGFASRGG 265

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BLAST of mRNA_L-elsbetiae_contig12774.2226.1 vs. uniprot
Match: A0A4Q9P6U8_9APHY (RRM domain-containing protein n=4 Tax=Dichomitus squalens TaxID=114155 RepID=A0A4Q9P6U8_9APHY)

HSP 1 Score: 139 bits (349), Expect = 1.560e-38
Identity = 64/97 (65.98%), Postives = 77/97 (79.38%), Query Frame = 0

Query:   43 TAETAANPDDSSVYVGQVDYDATPDELQSHFEACGTINRVTILCDKFSGRPKGYAYIEFADKDGAENALALDGSPFKGRNLKVTPKRTNVPGLAARG 139
            T E  A  D  S+YVG VDY ATP+E+Q HF+ACGTINRVTILCDKF+G PKGYAY+EFA+ +  + ALA+D S F+GR +KVTPKRTN+PG  ARG
Sbjct:   71 TEEDKAAADARSIYVGNVDYSATPEEIQQHFQACGTINRVTILCDKFTGHPKGYAYVEFAEPEFIDAALAMDNSLFRGRLIKVTPKRTNIPGFNARG 167

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BLAST of mRNA_L-elsbetiae_contig12774.2226.1 vs. uniprot
Match: A0A0D2ML37_HYPSF (RRM domain-containing protein n=1 Tax=Hypholoma sublateritium (strain FD-334 SS-4) TaxID=945553 RepID=A0A0D2ML37_HYPSF)

HSP 1 Score: 138 bits (348), Expect = 1.970e-38
Identity = 65/97 (67.01%), Postives = 77/97 (79.38%), Query Frame = 0

Query:   43 TAETAANPDDSSVYVGQVDYDATPDELQSHFEACGTINRVTILCDKFSGRPKGYAYIEFADKDGAENALALDGSPFKGRNLKVTPKRTNVPGLAARG 139
            T E  AN D  SVYVG VDY ATP+E+Q HF+ACGTINRVTILCDKF+G PKGYAY+EF++ +  + A+ALD S F+GR +KVT KRTNVPG  ARG
Sbjct:   69 TDEDKANTDSRSVYVGNVDYGATPEEIQGHFQACGTINRVTILCDKFTGHPKGYAYVEFSEPEHIDAAVALDNSLFRGRLIKVTAKRTNVPGFNARG 165

The following BLAST results are available for this feature:

BLAST of mRNA_L-elsbetiae_contig12774.2226.1 vs. uniprot

BLAST of mRNA_L-elsbetiae_contig12774.2226.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25


Match Name	E-value	Identity	Description
A0A6H5J939_9PHAE	2.120e-67	88.65	RRM domain-containing protein (Fragment) n=2 Tax=E...	[more]
A0A7S3XQ96_HETAK	5.460e-41	70.65	Hypothetical protein (Fragment) n=1 Tax=Heterosigm...	[more]
A0A1X2ILT2_9FUNG	5.430e-40	69.39	RRM domain-containing protein n=1 Tax=Absidia repe...	[more]
A0A7S2V693_9STRA	2.470e-39	71.59	Hypothetical protein (Fragment) n=1 Tax=Fibrocapsa...	[more]
A0A1X2GEA8_9FUNG	1.230e-38	73.03	RNA-binding domain-containing protein n=1 Tax=Hess...	[more]
UPI001E1D9E59	1.450e-38	68.42	polyadenylate-binding protein 2-like n=1 Tax=Merce...	[more]
A0A1Y2IDG2_PYCCO	1.470e-38	64.95	Polyadenylate-binding protein 2 n=1 Tax=Trametes c...	[more]
A0A163JZ81_ABSGL	1.490e-38	73.33	Uncharacterized protein n=1 Tax=Absidia glauca Tax...	[more]
A0A4Q9P6U8_9APHY	1.560e-38	65.98	RRM domain-containing protein n=4 Tax=Dichomitus s...	[more]
A0A0D2ML37_HYPSF	1.970e-38	67.01	RRM domain-containing protein n=1 Tax=Hypholoma su...	[more]

Pages

InterPro

Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 54..126 e-value: 1.6E-23 score: 94.1
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 55..124 e-value: 5.1E-19 score: 67.9
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 53..130 score: 17.66
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 42..155 e-value: 1.1E-27 score: 98.6
None	No IPR available	PANTHER	PTHR23236:SF12	POLYADENYLATE-BINDING PROTEIN 2	coord: 20..147
None	No IPR available	PANTHER	PTHR23236	EUKARYOTIC TRANSLATION INITIATION FACTOR 4B/4H	coord: 20..147
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 47..154

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
L-elsbetiae_contig12774	contig	L-elsbetiae_contig12774:680..3411 +

Analyses

This polypeptide is derived from or has results from the following analyses


Analysis Name	Date Performed
InterProScan on OGS1.0	2022-09-29
Diamond blastp: OGS1.0 vs UniRef90	2022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW15	2021-02-24

Relationships

This polypeptide derives from the following mRNA feature(s):


Feature Name	Unique Name	Species	Type	Position
mRNA_L-elsbetiae_contig12774.2226.1	mRNA_L-elsbetiae_contig12774.2226.1	Laminarionema elsbetiae ELsaHSoW15	mRNA	L-elsbetiae_contig12774 676..3411 +

Sequences

The following sequences are available for this feature:

polypeptide sequence

polypeptide sequence

>prot_L-elsbetiae_contig12774.2226.1 ID=prot_L-elsbetiae_contig12774.2226.1|Name=mRNA_L-elsbetiae_contig12774.2226.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=157bp
MDDPDDEEQRLEGLQQIISNSTANASAAAAAAAAAAAAAAAVTAETAANP
DDSSVYVGQVDYDATPDELQSHFEACGTINRVTILCDKFSGRPKGYAYIE
FADKDGAENALALDGSPFKGRNLKVTPKRTNVPGLAARGGRGRGRGRGAG
GGGYYVE

Annotated Terms

The following terms have been associated with this polypeptide:

Vocabulary: **INTERPRO**
Term	Definition
IPR000504	RRM_dom
IPR012677	Nucleotide-bd_a/b_plait_sf
IPR035979	RBD_domain_sf