mRNA_L-elsbetiae_contig1277.2224.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1277.2224.1 vs. uniprot
Match: D8LTB2_ECTSI (50S ribosomal protein L10 n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LTB2_ECTSI) HSP 1 Score: 325 bits (833), Expect = 4.320e-105 Identity = 183/245 (74.69%), Postives = 209/245 (85.31%), Query Frame = 1 Query: 1 MRTTTLAVVLCSVGAQAFVGTPVVDTTRACARTR---GSQPLNMAIIDTRKPAKISTRPGKVVVVAEVSALLEKSSMVFSLPSSSITANQVVALRKGLPDGCTAKVVKNTLMRIACKDTEFAHLAEVTSGENFWMFVEGEENLAEPIKYVANFAKQFDKDAPGWGGSPFKAGVFAGELLDGPGVLAISKLPNKQELMQRLAGAINSVPTKIGRSXXXXXXXXXXXXKLAFVPEGEDGEEGDAAAA 726 M+ TLAVVLC+ GA AFVGTPVV +ACA TR SQPLNMA+IDT KP K++ RP K+ V+ EV +LLE SSMVFS+PSS I+ANQVVALRK LP+GCTAKVVKN LMRIA +EFA LA+VT+GENFW+F+EGE+NLAEPIKYVA FAKQFDKD PGWGGSPFK+GVF G++LDGPGV+AISKLP K+ELMQRLA A+NSVPTK+GRSXXXXXXXXXXXXKLAF PE +D EGDAAAA Sbjct: 1 MKAPTLAVVLCAAGASAFVGTPVVQP-KACATTRRHSSSQPLNMAVIDTTKPPKLTKRPAKLKVIEEVKSLLESSSMVFSVPSSYISANQVVALRKDLPEGCTAKVVKNKLMRIASDGSEFAQLADVTTGENFWIFIEGEDNLAEPIKYVAEFAKQFDKDTPGWGGSPFKSGVFGGDVLDGPGVVAISKLPTKKELMQRLAIAVNSVPTKLGRSXXXXXXXXXXXXKLAFAPEEDDAPEGDAAAA 244
BLAST of mRNA_L-elsbetiae_contig1277.2224.1 vs. uniprot
Match: A0A835YRM7_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YRM7_9STRA) HSP 1 Score: 115 bits (289), Expect = 8.070e-26 Identity = 87/183 (47.54%), Postives = 113/183 (61.75%), Query Frame = 1 Query: 157 STRPGKVVVVAEVSALLEKSSMVFSLPSSSITANQVVALRKGLPDGCTAKVVKNTLMRIACKDTEF--AHLAEVTSGENFWMFVEGEENLAEPIKYVANFAKQFDKD---APGWGGSPFKAGVFAGELLDGPGVLAISKLPNKQELMQRLAGAINSVPTKIGRSXXXXXXXXXXXXKLAFVPE 690 STR GK+ +A V L K++M+F++PSS + N V +RK LP G A+VVKN LMR+A + A + ++T GEN W FVE ++L+E I +F K +K AP K GV G+ LD GV AIS LP+K EL +R+A + +VPTKI XXXXXXXXXXXXKLA V E Sbjct: 48 STRAGKLATIASVKEDLAKATMIFAIPSSQLKVNSVTDMRKKLPAGTKARVVKNKLMRLAVEGAPQWEAVVGDMTKGENMWFFVE--DDLSESITVAKDFIKVVNKKDTHAP-------KFGVLEGKALDAAGVEAISNLPSKTELYRRIAVGVKAVPTKIXXXXXXXXXXXXXXXKLALVDE 221
BLAST of mRNA_L-elsbetiae_contig1277.2224.1 vs. uniprot
Match: A0A5J4Z5L2_PORPP (50S ribosomal protein L10 n=1 Tax=Porphyridium purpureum TaxID=35688 RepID=A0A5J4Z5L2_PORPP) HSP 1 Score: 113 bits (282), Expect = 5.530e-25 Identity = 75/169 (44.38%), Postives = 108/169 (63.91%), Query Frame = 1 Query: 181 VVAEVSALLEKSSMVFSLPSSSITANQVVALRKGLPDGCTAKVVKNTLMRIACKDTEFAHL---AEVTSGENFWMFVEGEENLAEPIKYVANFAKQFDKDAPGWGGSPFKAGVFAGELLDGPGVLAISKLPNKQELMQRLAGAINSVPTKIGRSXXXXXXXXXXXXKLA 678 +V+EVSA +++S+MV SLP +T QV L+ +P+G T + VKNT+++ A DTE++ L +E+T G N W+F+ EE++ ++ + F K K + GVF GE D G++A+SKLP KQEL Q++A IN V TK+ R+ XXXXXXXXXX KLA Sbjct: 46 LVSEVSATMQQSTMVLSLPLEGLTVKQVNELKAAVPEGVTVRCVKNTIVKRAVADTEYSVLESGSELTKGHNLWVFIP-EESVRGTVEGITGFLKTSKKADT----NAINGGVFGGEAYDADGIVALSKLPTKQELYQQIAVGINQVNTKVARAIXXXXXXXXXXVKLA 209
BLAST of mRNA_L-elsbetiae_contig1277.2224.1 vs. uniprot
Match: A0A7S1E238_9STRA (Hypothetical protein n=1 Tax=Thalassionema nitzschioides TaxID=33649 RepID=A0A7S1E238_9STRA) HSP 1 Score: 107 bits (268), Expect = 4.220e-23 Identity = 80/181 (44.20%), Postives = 110/181 (60.77%), Query Frame = 1 Query: 151 KISTRPGKVVVVAEVSALLEKSSMVFSLPSSSITANQVVALRKGLPDGCTAKVVKNTLMRIACKDTEFAHLAEVTSGENFWMFVEGEENLAEPIKYVANFAKQFD-KDAPGWGGSPFKAGVFAGELLDGPGVLAISKLPNKQELMQRLAGAINSVPTKIGRSXXXXXXXXXXXXKLAFVPE 690 + ST GK VA++ +L++ S MVF++P+ SIT +Q LR+ LP+G TA VVKNTLM A T++ AE+ G + W F+E +++ IK F K+ D ++ G G GV L D GV I LP+K EL ++AG+I +VPTK XXXXXXXXXXXXKLA +P+ Sbjct: 39 RASTLEGKKEKVAQIQSLIDTSQMVFTVPAGSITVSQSEILRRSLPEGTTAAVVKNTLMERAVSGTDYETAAELLKGPHMWFFIE--DDIGASIKAYNGFIKENDLMESHGIIG-----GVIESTLYDADGVKQIGNLPSKLELYAKIAGSIKAVPTKXXXXXXXXXXXXXXXXKLATMPD 212
BLAST of mRNA_L-elsbetiae_contig1277.2224.1 vs. uniprot
Match: A0A0G4GLP8_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4GLP8_VITBC) HSP 1 Score: 108 bits (269), Expect = 2.200e-22 Identity = 78/196 (39.80%), Postives = 111/196 (56.63%), Query Frame = 1 Query: 157 STRPGKVVVVAEVSALLEKSSMVFSLPSSSITANQVVALRKGLPDGCTAKVVKNTLMRIACKDTEFAHLAEVTSGENFWMFVEGEENLAEPIKYVANFAKQFDKDAPGWGG-SPFKAGVFAGELLDGPGVLAISKLPNKQELMQRLAGAINSVPTKIGRSXXXXXXXXXXXXKLAFVPEGEDGEEGDAAAAPEAAA 741 +T+ GK + + S LL ++++F+L S + N+ V LR+ LP+G VKN L+R+A K T+F A +G++ ++FV E+ K V KQF K P + + K G F +LD GV AISKLP K EL+Q++A IN VPT++ S XXXXXXX LA V + G EG+ AA E +A Sbjct: 86 TTKEGKQATIDKFSDLLGDTNLLFALEGSKLGPNERVKLRRSLPEGTKIHTVKNRLLRVAAKGTDFEDYANGATGQSLYVFVTHED-----YKGVMEALKQFGKGMPDFREHNVIKGGSFDSTVLDAEGVDAISKLPTKLELIQKIAVLINMVPTRLATSVKXXXXXXXRAINLALVDGKDGGGEGEGTAAEEPSA 276
BLAST of mRNA_L-elsbetiae_contig1277.2224.1 vs. uniprot
Match: A0A7S2ZLQ0_9RHOD (Hypothetical protein n=2 Tax=Rhodosorus marinus TaxID=101924 RepID=A0A7S2ZLQ0_9RHOD) HSP 1 Score: 106 bits (264), Expect = 3.800e-22 Identity = 75/169 (44.38%), Postives = 102/169 (60.36%), Query Frame = 1 Query: 190 EVSALLEKSSMVFSLPSSSITANQVVALRKGLPDGCTAKVVKNTLMRIACKDTEFAHLAEVTSGENFWMFVEGEENLAEPIKYVANFAKQFDKDAPGWGGSPFKAGVFAGELLDGPGVLAISKLPNKQELMQRLAGAINSVPTKIGRSXXXXXXXXXXXXKLAFVPEGE 696 +V L+KS++ F+LP T +V LR +P+ A VKNTL RIA D+ + ++T G N W+F E E ++ ++ + F K+ K+ + GV L DG GV A+SKLP+KQ+L Q++A AINSVPTK+GR XXXXXXXXXXX KLA E E Sbjct: 90 QVREQLDKSTLAFALPLEGYTVKEVSELRNVIPENSCALAVKNTLFRIAIADSTWDVAGDLTKGSNLWIFTE-EADMKGTVEAIKKFNKEKKKEET----NGISGGVMENTLYDGKGVEALSKLPSKQDLYQKIAIAINSVPTKVGRXXXXXXXXXXXXIKLAKAEEEE 253
BLAST of mRNA_L-elsbetiae_contig1277.2224.1 vs. uniprot
Match: K0STH8_THAOC (Uncharacterized protein (Fragment) n=1 Tax=Thalassiosira oceanica TaxID=159749 RepID=K0STH8_THAOC) HSP 1 Score: 107 bits (268), Expect = 5.350e-22 Identity = 74/186 (39.78%), Postives = 97/186 (52.15%), Query Frame = 1 Query: 157 STRPGKVVVVAEVSALLEKSSMVFSLPSSSITANQVVALRKGLPDGCTAKVVKNTLMRIACKDTEFAHLAEVTSGENFWMFVEGEENLAEPIKYVANFAKQFDKDAPGWGGSPFKAGVFAGELLDGPGVLAISKLPNKQELMQRLAGAINSVPTKIGRSXXXXXXXXXXXXKLAFVPEGEDGEEGD 714 +T GK V+ V LL+ S MVF++P+S IT QV LR+ LP+G TAKVVKN LM A + TE+ + E+ G N W F+E E++ +K K+F KD G G D GV ISKLP+K EL+ ++A I +VPTK+ R KLA GEEGD Sbjct: 163 TTLEGKKNTVSAVKELLDSSEMVFTVPASGITVAQVQGLRRSLPEGTTAKVVKNKLMSRAIEGTEYEPVNEMLKGANMWFFIE--EDIGGSVKSW----KKFVKDEALAESHSILGGNIEGTNYDTAGVEQISKLPSKIELITQIASRIQAVPTKVARVVKAPGMKVARAIKLA-------GEEGD 335
BLAST of mRNA_L-elsbetiae_contig1277.2224.1 vs. uniprot
Match: R7Q865_CHOCR (Uncharacterized protein n=1 Tax=Chondrus crispus TaxID=2769 RepID=R7Q865_CHOCR) HSP 1 Score: 95.1 bits (235), Expect = 1.540e-18 Identity = 76/181 (41.99%), Postives = 102/181 (56.35%), Query Frame = 1 Query: 184 VAEVSALLEKSSMVFSLPSSSITANQVVALRKGLPDGCTAKVVKNTLMRIACKDTEFAHLAEVTSGENFWMFVEGEENLAEPIKYVANFAKQFDKDAPGWGGSPFKAGVFAGELLDGPGVLAISKLPNKQELMQRLAGAINSVPTKIGRSXXXXXXXXXXXXKLAFVPEGEDGEEGDAAAA 726 VA V LE M+F+ S ++ QV LR+ +P VKNTLMR A +D+E+A E T G + W FV+ ++ ++ FAK +D P GV+ G+ DG G+ AI+ LP+KQEL+Q++A I VPTK XXXXXXXXXXXXKLA E +GD +AA Sbjct: 57 VALVKESLENCQMLFATNLSGLSVAQVYDLRQRVPKTTKCMTVKNTLMRRAIEDSEWASAHEFTVGSSLWFFVQ--DDFKGSVEAFEKFAKDLKRD-------PIIGGVYDGQKCDGEGIKAIAALPSKQELIQKIAVGIRMVPTKXXXXXXXXXXXXXXXXKLAVADE----SKGDESAA 224
BLAST of mRNA_L-elsbetiae_contig1277.2224.1 vs. uniprot
Match: A0A7R9UKR4_DIALT (Hypothetical protein (Fragment) n=2 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A7R9UKR4_DIALT) HSP 1 Score: 87.0 bits (214), Expect = 1.320e-15 Identity = 53/158 (33.54%), Postives = 87/158 (55.06%), Query Frame = 1 Query: 172 KVVVVAEVSALLEKSSMVFSLPSSSITANQVVALRKGLPDGCTAKVVKNTLM-RIACKDTEFAHLAEVTSGENFWMFVEGEENLAEPIKYVANFAKQFDKDA---PGWGGSPFKAGVFAGELLDGPGVLAISKLPNKQELMQRLAGAINSVPTKIGRS 633 K V V A L+ S+++F+ + + N++ ALR +P+ + +VKN L+ R D ++ HL + N+W FV EE++ I+ V F K+ +D P + GVF G LD G++ +SKLP+K EL+ ++A IN VPT++ +S Sbjct: 83 KDATVDSVKARLDASALIFTFRADGVPVNKLRALRNEMPERSSITLVKNRLLKRAVAGDPKWDHLNPLLENSNYWAFVH-EEDIKPSIEAVQKFLKESGRDKAEHPLGDQRGVRGGVFDGATLDVDGIVKVSKLPSKLELITQIAYGINMVPTRLAKS 239
BLAST of mRNA_L-elsbetiae_contig1277.2224.1 vs. uniprot
Match: A0A1W9PXC8_9DELT (50S ribosomal protein L10 n=1 Tax=Desulfococcus sp. 4484_241 TaxID=1968522 RepID=A0A1W9PXC8_9DELT) HSP 1 Score: 81.6 bits (200), Expect = 2.290e-14 Identity = 51/154 (33.12%), Postives = 86/154 (55.84%), Query Frame = 1 Query: 172 KVVVVAEVSALLEKSSMVFSLPSSSITANQVVALRKGLPD-GCTAKVVKNTLMRIACKDTEFAHLAEVTSGENFWMFVEGEENLAEPIKYVANFAKQFDKDAPGWGGSPFKAGVFAGELLDGPGVLAISKLPNKQELMQRLAGAINSVPTKIGR 630 K +V E+ +K++++ +T +Q+ LR+ L D G +VVKNTL+R A +DT+ +++ G V G ++ P K +++FAK+ DK KAGV G LLD ++A++KLP+++EL+ +L +N VPT + R Sbjct: 7 KKALVEELHDSFQKAAVMILTDYKGLTVDQINGLRRKLKDAGVEMRVVKNTLLRRAVRDTDMEAVSDYFKGPT--AVVIGYDDPVAPAKILSDFAKENDK-------LEIKAGVMGGGLLDRDRIIALAKLPSREELLAQLLSVLNGVPTSLVR 151 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1277.2224.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1277.2224.1 >prot_L-elsbetiae_contig1277.2224.1 ID=prot_L-elsbetiae_contig1277.2224.1|Name=mRNA_L-elsbetiae_contig1277.2224.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=249bp MRTTTLAVVLCSVGAQAFVGTPVVDTTRACARTRGSQPLNMAIIDTRKPAback to top mRNA from alignment at L-elsbetiae_contig1277:12278..18193+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1277.2224.1 ID=mRNA_L-elsbetiae_contig1277.2224.1|Name=mRNA_L-elsbetiae_contig1277.2224.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5916bp|location=Sequence derived from alignment at L-elsbetiae_contig1277:12278..18193+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1277:12278..18193+ >mRNA_L-elsbetiae_contig1277.2224.1 ID=mRNA_L-elsbetiae_contig1277.2224.1|Name=mRNA_L-elsbetiae_contig1277.2224.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1494bp|location=Sequence derived from alignment at L-elsbetiae_contig1277:12278..18193+ (Laminarionema elsbetiae ELsaHSoW15)back to top |