mRNA_L-elsbetiae_contig12745.2205.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12745.2205.1
Unique NamemRNA_L-elsbetiae_contig12745.2205.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig12745.2205.1 vs. uniprot
Match: A0A6H5JQ54_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ54_9PHAE)

HSP 1 Score: 143 bits (361), Expect = 6.090e-34
Identity = 330/485 (68.04%), Postives = 351/485 (72.37%), Query Frame = 1 
Query:    7 HRLRSRDRALRAAVATGWLPLADVLVLQLASLATCIDCREAQKPLQVNVAKRTPATLWSDISGKDGPSGRETGVDTASGGGXXXXXXXXXXDSRGRIPRPRIAAVLWTRASPCPALRRELPSEARRVTFGSTFNQGVAEIDWPRGVEEXXXXXXXXXXXXXXXXXXXXXXXSFADASSXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAGGE----GVRWPSMLERITLRSYGRDXXXXXXXXXXXXXXXXGTFSLPIDGISLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFNSNVXXXXXXXXXXXXXXXXXXXGDGXXXXXXXXXXXXXXXXXXXGDRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDLGDCHMLWGCGPKEGYEGWSPRLEIISRKSLGSLGWRR 1449
            H + +    LRAA A+GWLP AD++ LQLASLA C+ CR AQKP+ VNVAKRTP TLWS     D P       D+A  G               R+PRP I A+ W RASPC ALR +LPSEA+R+TFGS FN  +  I WP G+EEXXXXXXXXXXXXXXXXXXXXXXX       XXXXXXXXXXXXXXXXXXXXXXXXXXX  +  +    GVRWPS LERI L SY R          XXXXXXX            XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      +S V                   GDG XXXXXXXXXXXXXXXXXX   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX LDLG CHM WGCGPKEGYE WSPRLEIISRK + +LGW+R
Sbjct:    8 HHVTTLCSGLRAAAASGWLPFADLITLQLASLAMCVICRHAQKPVLVNVAKRTPKTLWSI----DRPRIAHESTDSADEGDGSGGAPGFAS----RVPRPTIEAISWIRASPCSALRDKLPSEAKRLTFGSNFNHTLVGIRWPEGLEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVHSTDKVKEGGVRWPSTLERIALGSYRRSLTGVSWPPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSQFSIDSKVFNYPVSGVSWPDFMTDLHFGDGFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLDLGHCHMTWGCGPKEGYENWSPRLEIISRKRISTLGWQR 484
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BLAST of mRNA_L-elsbetiae_contig12745.2205.1 vs. uniprot
Match: D7FU94_ECTSI (Proline dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU94_ECTSI)

HSP 1 Score: 144 bits (363), Expect = 4.080e-33
Identity = 79/150 (52.67%), Postives = 92/150 (61.33%), Query Frame = 1 
Query:    1 AEHRLRSRDRALRAAVATGWLPLADVLVLQLASLATCIDCREAQKPLQVNVAKRTPATLWSDISGKDGPSGRETGVDTASGGGXXXXXXXXXXDSRGRIPRPRIAAVLWTRASPCPALRRELPSEARRVTFGSTFNQGVAEIDWPRGVEE 450
            A+ R   RD  LRAA A+GWLP AD++  QLASLA C+ CR AQKP+ VNVAKRTP TLWS     D P       D+A  G               R+PRP I A+ W RASPCPALR +LPSEA+R+ FGS FN  V  I WP G+EE
Sbjct:   15 ADRRRCRRDAGLRAAAASGWLPFADLITFQLASLAMCVICRHAQKPVLVNVAKRTPKTLWSI----DRPRIAHESTDSADEG----EGSGGAPGFASRVPRPTIEAISWIRASPCPALRDKLPSEAKRLAFGSNFNHTVVGIRWPEGLEE 156
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12745.2205.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JQ54_9PHAE6.090e-3468.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FU94_ECTSI4.080e-3352.67Proline dehydrogenase n=1 Tax=Ectocarpus siliculos... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12745contigL-elsbetiae_contig12745:3171..4625 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score144.8
Seed ortholog evalue1e-31
Seed eggNOG ortholog2880.D7FU94
KEGG rclassRC00083
KEGG koko:K00318
KEGG ReactionR10507
KEGG Pathwayko00330,ko01100,ko01110,ko01130,map00330,map01100,map01110,map01130
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.proline dehydrogenase activity
EggNOG OGsCOG0506@1,KOG0186@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-18_001350.1
Exons1
Model size1455
Cds size1455
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815462.4364429-CDS-L-elsbetiae_contig12745:3170..46251622815462.4364429-CDS-L-elsbetiae_contig12745:3170..4625Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12745 3171..4625 +
1691682909.4878316-CDS-L-elsbetiae_contig12745:3170..46251691682909.4878316-CDS-L-elsbetiae_contig12745:3170..4625Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12745 3171..4625 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12745.2205.1prot_L-elsbetiae_contig12745.2205.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12745 3171..4625 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12745.2205.1

>prot_L-elsbetiae_contig12745.2205.1 ID=prot_L-elsbetiae_contig12745.2205.1|Name=mRNA_L-elsbetiae_contig12745.2205.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=485bp
AEHRLRSRDRALRAAVATGWLPLADVLVLQLASLATCIDCREAQKPLQVN
VAKRTPATLWSDISGKDGPSGRETGVDTASGGGGGGGTGGTGGDSRGRIP
RPRIAAVLWTRASPCPALRRELPSEARRVTFGSTFNQGVAEIDWPRGVEE
IAFGSKFSQPIAGVAWPELLKKISFADASSFNQSLAGVAWPEGLKEVAFG
ARFNQALSGAGGEGVRWPSMLERITLRSYGRDLREVSWPRGLRALIVGGT
FSLPIDGISLPVGLEELQISSTFNHPIDDVAFPATLKVLLLGNQFNQPIS
RVVWPASLEKLSFGLAFDQRVEGLQLPAGMTHLSFNSNVFNQPVQGVAWP
EGLTELFFGDGFNQDVSSLHWPPCLTRLVFGDRFNKSVEGLGWPSALETL
SFGHNFNQPVASIVWPSSLKRIHFGARFKQCLSGADWPTTLETLDLGDCH
MLWGCGPKEGYEGWSPRLEIISRKSLGSLGWRRT*
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mRNA from alignment at L-elsbetiae_contig12745:3171..4625+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12745.2205.1 ID=mRNA_L-elsbetiae_contig12745.2205.1|Name=mRNA_L-elsbetiae_contig12745.2205.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1455bp|location=Sequence derived from alignment at L-elsbetiae_contig12745:3171..4625+ (Laminarionema elsbetiae ELsaHSoW15)
GCTGAGCATCGCTTGCGTAGTCGAGACCGTGCTCTCCGCGCGGCGGTGGC
AACGGGCTGGCTGCCGCTAGCCGACGTGCTCGTCCTCCAGCTCGCGTCGC
TGGCCACTTGCATCGACTGCCGAGAGGCCCAGAAGCCGCTGCAGGTGAAT
GTTGCCAAGCGTACACCGGCGACGCTGTGGTCCGATATCAGCGGCAAGGA
CGGTCCCTCCGGGCGCGAGACCGGTGTTGACACCGCCAGCGGGGGCGGCG
GGGGGGGAGGGACCGGCGGAACCGGTGGTGACAGCCGTGGCCGCATTCCT
CGGCCAAGAATCGCGGCTGTCTTGTGGACTCGGGCGTCACCGTGCCCCGC
ACTTCGCCGCGAGCTGCCGTCGGAGGCGAGGAGGGTCACATTTGGGAGCA
CTTTTAACCAGGGGGTGGCCGAGATCGACTGGCCACGCGGGGTGGAGGAG
ATCGCGTTTGGGTCCAAGTTTTCGCAGCCGATCGCAGGGGTGGCCTGGCC
CGAGCTCCTCAAGAAGATATCCTTCGCGGACGCGTCGTCTTTCAACCAGT
CGCTGGCGGGCGTTGCGTGGCCCGAGGGCCTCAAGGAAGTCGCGTTCGGG
GCGAGGTTCAACCAAGCCTTGTCCGGGGCGGGGGGCGAGGGGGTGCGTTG
GCCGTCGATGCTCGAGCGCATCACCTTGCGAAGCTACGGGAGAGACTTGA
GGGAGGTGTCGTGGCCGCGCGGGCTGCGTGCTTTGATTGTCGGTGGAACG
TTTAGTCTGCCGATCGATGGCATCAGCCTTCCCGTCGGGCTGGAGGAGTT
GCAGATCTCCTCGACCTTCAACCATCCCATCGACGACGTCGCCTTTCCCG
CAACCTTGAAAGTTCTCCTTCTCGGCAACCAGTTCAACCAGCCGATTTCC
CGGGTTGTGTGGCCAGCTTCCCTGGAAAAGCTGTCGTTCGGGCTGGCGTT
TGACCAGCGGGTGGAAGGGCTTCAGCTGCCGGCCGGGATGACGCACCTCT
CCTTCAATAGCAACGTCTTCAACCAACCCGTGCAAGGGGTAGCGTGGCCG
GAAGGGTTGACGGAGCTCTTTTTCGGCGACGGTTTCAACCAGGACGTCAG
CTCCCTGCATTGGCCGCCGTGCCTAACGAGGCTTGTGTTCGGGGACCGGT
TCAACAAGTCGGTCGAGGGGCTGGGGTGGCCCAGCGCTCTCGAAACGCTC
TCGTTCGGCCACAACTTCAACCAGCCCGTCGCGAGTATTGTCTGGCCTTC
ATCTCTCAAACGTATCCATTTCGGAGCACGTTTTAAGCAGTGCCTGTCCG
GAGCCGACTGGCCCACGACACTCGAGACCCTTGATCTGGGCGATTGCCAT
ATGTTGTGGGGTTGCGGGCCCAAGGAGGGGTACGAGGGATGGTCGCCGCG
TCTGGAGATTATTTCGCGAAAGAGTCTTGGAAGCTTGGGATGGCGGCGAA
CGTAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12745:3171..4625+

>mRNA_L-elsbetiae_contig12745.2205.1 ID=mRNA_L-elsbetiae_contig12745.2205.1|Name=mRNA_L-elsbetiae_contig12745.2205.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2910bp|location=Sequence derived from alignment at L-elsbetiae_contig12745:3171..4625+ (Laminarionema elsbetiae ELsaHSoW15)
GCTGAGCATCGCTTGCGTAGTCGAGACCGTGCTCTCCGCGCGGCGGTGGC
AACGGGCTGGCTGCCGCTAGCCGACGTGCTCGTCCTCCAGCTCGCGTCGC
TGGCCACTTGCATCGACTGCCGAGAGGCCCAGAAGCCGCTGCAGGTGAAT
GTTGCCAAGCGTACACCGGCGACGCTGTGGTCCGATATCAGCGGCAAGGA
CGGTCCCTCCGGGCGCGAGACCGGTGTTGACACCGCCAGCGGGGGCGGCG
GGGGGGGAGGGACCGGCGGAACCGGTGGTGACAGCCGTGGCCGCATTCCT
CGGCCAAGAATCGCGGCTGTCTTGTGGACTCGGGCGTCACCGTGCCCCGC
ACTTCGCCGCGAGCTGCCGTCGGAGGCGAGGAGGGTCACATTTGGGAGCA
CTTTTAACCAGGGGGTGGCCGAGATCGACTGGCCACGCGGGGTGGAGGAG
ATCGCGTTTGGGTCCAAGTTTTCGCAGCCGATCGCAGGGGTGGCCTGGCC
CGAGCTCCTCAAGAAGATATCCTTCGCGGACGCGTCGTCTTTCAACCAGT
CGCTGGCGGGCGTTGCGTGGCCCGAGGGCCTCAAGGAAGTCGCGTTCGGG
GCGAGGTTCAACCAAGCCTTGTCCGGGGCGGGGGGCGAGGGGGTGCGTTG
GCCGTCGATGCTCGAGCGCATCACCTTGCGAAGCTACGGGAGAGACTTGA
GGGAGGTGTCGTGGCCGCGCGGGCTGCGTGCTTTGATTGTCGGTGGAACG
TTTAGTCTGCCGATCGATGGCATCAGCCTTCCCGTCGGGCTGGAGGAGTT
GCAGATCTCCTCGACCTTCAACCATCCCATCGACGACGTCGCCTTTCCCG
CAACCTTGAAAGTTCTCCTTCTCGGCAACCAGTTCAACCAGCCGATTTCC
CGGGTTGTGTGGCCAGCTTCCCTGGAAAAGCTGTCGTTCGGGCTGGCGTT
TGACCAGCGGGTGGAAGGGCTTCAGCTGCCGGCCGGGATGACGCACCTCT
CCTTCAATAGCAACGTCTTCAACCAACCCGTGCAAGGGGTAGCGTGGCCG
GAAGGGTTGACGGAGCTCTTTTTCGGCGACGGTTTCAACCAGGACGTCAG
CTCCCTGCATTGGCCGCCGTGCCTAACGAGGCTTGTGTTCGGGGACCGGT
TCAACAAGTCGGTCGAGGGGCTGGGGTGGCCCAGCGCTCTCGAAACGCTC
TCGTTCGGCCACAACTTCAACCAGCCCGTCGCGAGTATTGTCTGGCCTTC
ATCTCTCAAACGTATCCATTTCGGAGCACGTTTTAAGCAGTGCCTGTCCG
GAGCCGACTGGCCCACGACACTCGAGACCCTTGATCTGGGCGATTGCCAT
ATGTTGTGGGGTTGCGGGCCCAAGGAGGGGTACGAGGGATGGTCGCCGCG
TCTGGAGATTATTTCGCGAAAGAGTCTTGGAAGCTTGGGATGGCGGCGAA
CGTAGGCTGAGCATCGCTTGCGTAGTCGAGACCGTGCTCTCCGCGCGGCG
GTGGCAACGGGCTGGCTGCCGCTAGCCGACGTGCTCGTCCTCCAGCTCGC
GTCGCTGGCCACTTGCATCGACTGCCGAGAGGCCCAGAAGCCGCTGCAGG
TGAATGTTGCCAAGCGTACACCGGCGACGCTGTGGTCCGATATCAGCGGC
AAGGACGGTCCCTCCGGGCGCGAGACCGGTGTTGACACCGCCAGCGGGGG
CGGCGGGGGGGGAGGGACCGGCGGAACCGGTGGTGACAGCCGTGGCCGCA
TTCCTCGGCCAAGAATCGCGGCTGTCTTGTGGACTCGGGCGTCACCGTGC
CCCGCACTTCGCCGCGAGCTGCCGTCGGAGGCGAGGAGGGTCACATTTGG
GAGCACTTTTAACCAGGGGGTGGCCGAGATCGACTGGCCACGCGGGGTGG
AGGAGATCGCGTTTGGGTCCAAGTTTTCGCAGCCGATCGCAGGGGTGGCC
TGGCCCGAGCTCCTCAAGAAGATATCCTTCGCGGACGCGTCGTCTTTCAA
CCAGTCGCTGGCGGGCGTTGCGTGGCCCGAGGGCCTCAAGGAAGTCGCGT
TCGGGGCGAGGTTCAACCAAGCCTTGTCCGGGGCGGGGGGCGAGGGGGTG
CGTTGGCCGTCGATGCTCGAGCGCATCACCTTGCGAAGCTACGGGAGAGA
CTTGAGGGAGGTGTCGTGGCCGCGCGGGCTGCGTGCTTTGATTGTCGGTG
GAACGTTTAGTCTGCCGATCGATGGCATCAGCCTTCCCGTCGGGCTGGAG
GAGTTGCAGATCTCCTCGACCTTCAACCATCCCATCGACGACGTCGCCTT
TCCCGCAACCTTGAAAGTTCTCCTTCTCGGCAACCAGTTCAACCAGCCGA
TTTCCCGGGTTGTGTGGCCAGCTTCCCTGGAAAAGCTGTCGTTCGGGCTG
GCGTTTGACCAGCGGGTGGAAGGGCTTCAGCTGCCGGCCGGGATGACGCA
CCTCTCCTTCAATAGCAACGTCTTCAACCAACCCGTGCAAGGGGTAGCGT
GGCCGGAAGGGTTGACGGAGCTCTTTTTCGGCGACGGTTTCAACCAGGAC
GTCAGCTCCCTGCATTGGCCGCCGTGCCTAACGAGGCTTGTGTTCGGGGA
CCGGTTCAACAAGTCGGTCGAGGGGCTGGGGTGGCCCAGCGCTCTCGAAA
CGCTCTCGTTCGGCCACAACTTCAACCAGCCCGTCGCGAGTATTGTCTGG
CCTTCATCTCTCAAACGTATCCATTTCGGAGCACGTTTTAAGCAGTGCCT
GTCCGGAGCCGACTGGCCCACGACACTCGAGACCCTTGATCTGGGCGATT
GCCATATGTTGTGGGGTTGCGGGCCCAAGGAGGGGTACGAGGGATGGTCG
CCGCGTCTGGAGATTATTTCGCGAAAGAGTCTTGGAAGCTTGGGATGGCG
GCGAACGTAG
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