prot_L-elsbetiae_contig12745.2205.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig12745.2205.1
Unique Nameprot_L-elsbetiae_contig12745.2205.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length485
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig12745.2205.1 vs. uniprot
Match: A0A6H5JQ54_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQ54_9PHAE)

HSP 1 Score: 143 bits (361), Expect = 6.090e-34
Identity = 330/485 (68.04%), Postives = 351/485 (72.37%), Query Frame = 0 
Query:    3 HRLRSRDRALRAAVATGWLPLADVLVLQLASLATCIDCREAQKPLQVNVAKRTPATLWSDISGKDGPSGRETGVDTASGGGXXXXXXXXXXDSRGRIPRPRIAAVLWTRASPCPALRRELPSEARRVTFGSTFNQGVAEIDWPRGVEEXXXXXXXXXXXXXXXXXXXXXXXSFADASSXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAGGE----GVRWPSMLERITLRSYGRDXXXXXXXXXXXXXXXXGTFSLPIDGISLXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXFNSNVXXXXXXXXXXXXXXXXXXXGDGXXXXXXXXXXXXXXXXXXXGDRXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLDLGDCHMLWGCGPKEGYEGWSPRLEIISRKSLGSLGWRR 483
            H + +    LRAA A+GWLP AD++ LQLASLA C+ CR AQKP+ VNVAKRTP TLWS     D P       D+A  G               R+PRP I A+ W RASPC ALR +LPSEA+R+TFGS FN  +  I WP G+EEXXXXXXXXXXXXXXXXXXXXXXX       XXXXXXXXXXXXXXXXXXXXXXXXXXX  +  +    GVRWPS LERI L SY R          XXXXXXX            XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX      +S V                   GDG XXXXXXXXXXXXXXXXXX   XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX LDLG CHM WGCGPKEGYE WSPRLEIISRK + +LGW+R
Sbjct:    8 HHVTTLCSGLRAAAASGWLPFADLITLQLASLAMCVICRHAQKPVLVNVAKRTPKTLWSI----DRPRIAHESTDSADEGDGSGGAPGFAS----RVPRPTIEAISWIRASPCSALRDKLPSEAKRLTFGSNFNHTLVGIRWPEGLEEXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXVHSTDKVKEGGVRWPSTLERIALGSYRRSLTGVSWPPGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXLSQFSIDSKVFNYPVSGVSWPDFMTDLHFGDGFXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTLDLGHCHMTWGCGPKEGYENWSPRLEIISRKRISTLGWQR 484
[Close]
BLAST of mRNA_L-elsbetiae_contig12745.2205.1 vs. uniprot
Match: D7FU94_ECTSI (Proline dehydrogenase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FU94_ECTSI)

HSP 1 Score: 144 bits (363), Expect = 4.080e-33
Identity = 79/150 (52.67%), Postives = 92/150 (61.33%), Query Frame = 0 
Query:    1 AEHRLRSRDRALRAAVATGWLPLADVLVLQLASLATCIDCREAQKPLQVNVAKRTPATLWSDISGKDGPSGRETGVDTASGGGXXXXXXXXXXDSRGRIPRPRIAAVLWTRASPCPALRRELPSEARRVTFGSTFNQGVAEIDWPRGVEE 150
            A+ R   RD  LRAA A+GWLP AD++  QLASLA C+ CR AQKP+ VNVAKRTP TLWS     D P       D+A  G               R+PRP I A+ W RASPCPALR +LPSEA+R+ FGS FN  V  I WP G+EE
Sbjct:   15 ADRRRCRRDAGLRAAAASGWLPFADLITFQLASLAMCVICRHAQKPVLVNVAKRTPKTLWSI----DRPRIAHESTDSADEG----EGSGGAPGFASRVPRPTIEAISWIRASPCPALRDKLPSEAKRLAFGSNFNHTVVGIRWPEGLEE 156
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12745.2205.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JQ54_9PHAE6.090e-3468.04Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FU94_ECTSI4.080e-3352.67Proline dehydrogenase n=1 Tax=Ectocarpus siliculos... [more]
back to top
InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR032675Leucine-rich repeat domain superfamilyGENE3D3.80.10.10coord: 235..474
e-value: 2.0E-8
score: 35.0
IPR008615FNIPPFAMPF05725FNIPcoord: 273..314
e-value: 3.3E-8
score: 33.5
coord: 384..425
e-value: 2.2E-6
score: 27.7
NoneNo IPR availablePANTHERPTHR32134UNCHARACTERIZEDcoord: 273..445
NoneNo IPR availablePANTHERPTHR32134:SF86coord: 120..337
NoneNo IPR availablePANTHERPTHR32134UNCHARACTERIZEDcoord: 120..337
NoneNo IPR availablePANTHERPTHR32134:SF86coord: 273..445
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 1..11
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 33..484
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 12..32
NoneNo IPR availableSIGNALP_EUKSignalP-noTMSignalP-noTMcoord: 1..43
score: 0.494
NoneNo IPR availableSUPERFAMILY52058L domain-likecoord: 231..454

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12745contigL-elsbetiae_contig12745:3171..4625 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12745.2205.1mRNA_L-elsbetiae_contig12745.2205.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig12745 3171..4625 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig12745.2205.1 ID=prot_L-elsbetiae_contig12745.2205.1|Name=mRNA_L-elsbetiae_contig12745.2205.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=485bp
AEHRLRSRDRALRAAVATGWLPLADVLVLQLASLATCIDCREAQKPLQVN
VAKRTPATLWSDISGKDGPSGRETGVDTASGGGGGGGTGGTGGDSRGRIP
RPRIAAVLWTRASPCPALRRELPSEARRVTFGSTFNQGVAEIDWPRGVEE
IAFGSKFSQPIAGVAWPELLKKISFADASSFNQSLAGVAWPEGLKEVAFG
ARFNQALSGAGGEGVRWPSMLERITLRSYGRDLREVSWPRGLRALIVGGT
FSLPIDGISLPVGLEELQISSTFNHPIDDVAFPATLKVLLLGNQFNQPIS
RVVWPASLEKLSFGLAFDQRVEGLQLPAGMTHLSFNSNVFNQPVQGVAWP
EGLTELFFGDGFNQDVSSLHWPPCLTRLVFGDRFNKSVEGLGWPSALETL
SFGHNFNQPVASIVWPSSLKRIHFGARFKQCLSGADWPTTLETLDLGDCH
MLWGCGPKEGYEGWSPRLEIISRKSLGSLGWRRT*
back to top
Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR032675LRR_dom_sf
IPR008615FNIP