mRNA_L-elsbetiae_contig12740.2202.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12740.2202.1
Unique NamemRNA_L-elsbetiae_contig12740.2202.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig12740.2202.1 vs. uniprot
Match: A0A6H5JLE3_9PHAE (Uncharacterized protein (Fragment) n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLE3_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 4.240e-12
Identity = 70/166 (42.17%), Postives = 90/166 (54.22%), Query Frame = 1 
Query:   19 IMVRTTRRKCSNQCHEAPCIALVAAMVAVSTAAGARTAAS------------YNSNA---SNALFAFGAAGGPPASRFGCVGGGNLMARHRVQALSMNLAAAPARSPRAAAAATGTAGDTGATTDRGVAARPSRRXXXXTETSSG---AAQEGVLTVGGTNIGIGI 462
            +M R TR +C +Q HE+P  AL+ AM    TA  A  A S            Y+S++   +N+L AFGA    P SRF   GG  + A+HRVQ LSM LAAAP  +P A  AA G  GD+ A +    + R    XX  +    G   AA+ GVL+VGG+NIGI I
Sbjct:   26 LMTRGTRHRCVHQSHESPYAALIVAMAMTVTATSAGPAGSCVRGAATCTPPLYSSSSRINTNSLLAFGAVA-KPTSRFVSGGGREVAAKHRVQTLSMKLAAAPVHTPSAPGAALG--GDSTAVSPSHSSVRXXXXXXPTSIGERGGGNAAEGGVLSVGGSNIGIDI 188
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BLAST of mRNA_L-elsbetiae_contig12740.2202.1 vs. uniprot
Match: D8LKG7_ECTSI (Haloacid dehalogenase-like hydrolase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LKG7_ECTSI)

HSP 1 Score: 62.0 bits (149), Expect = 7.340e-8
Identity = 54/103 (52.43%), Postives = 63/103 (61.17%), Query Frame = 1 
Query:  157 NALFAFGAAGGPPASRFGCVGGGNLMARHRVQALSMNLAAAPARSPRAAAAATGTAGDTGATTDRGVAARPSRRXXXXT--ETSSGAAQEG-VLTVGGTNIGI 456
            N L AFGA    P SRFG  GG  + A+HRVQ LSM LAAAP R+P A  AA G  GD+ A +    + R    XXX +  E   G+A EG VL+VGGTNIGI
Sbjct:   38 NCLLAFGAVA-KPTSRFGAGGGREVAAKHRVQTLSMKLAAAPVRTPSATGAAIG--GDSTAVSPSHSSVRXXXXXXXTSIGERGGGSAAEGGVLSVGGTNIGI 137
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12740.2202.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JLE3_9PHAE4.240e-1242.17Uncharacterized protein (Fragment) n=1 Tax=Ectocar... [more]
D8LKG7_ECTSI7.340e-852.43Haloacid dehalogenase-like hydrolase n=1 Tax=Ectoc... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12740contigL-elsbetiae_contig12740:1834..3186 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.5
Seed ortholog evalue1.2e-07
Seed eggNOG ortholog2880.D8LKG7
Hectar predicted targeting categoryother localisation
EggNOG free text desc.pseudouridine 5'-phosphatase activity
EggNOG OGsCOG0637@1,KOG2914@2759
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons2
Model size587
Cds size564
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12740.2202.1prot_L-elsbetiae_contig12740.2202.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12740 1834..3165 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815462.1453154-CDS-L-elsbetiae_contig12740:1833..21661622815462.1453154-CDS-L-elsbetiae_contig12740:1833..2166Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12740 1834..2166 -
1691682909.331435-CDS-L-elsbetiae_contig12740:1833..21661691682909.331435-CDS-L-elsbetiae_contig12740:1833..2166Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12740 1834..2166 -
1622815462.1561484-CDS-L-elsbetiae_contig12740:2934..31651622815462.1561484-CDS-L-elsbetiae_contig12740:2934..3165Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12740 2935..3165 -
1691682909.3433175-CDS-L-elsbetiae_contig12740:2934..31651691682909.3433175-CDS-L-elsbetiae_contig12740:2934..3165Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12740 2935..3165 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815462.1677716-UTR-L-elsbetiae_contig12740:3165..31861622815462.1677716-UTR-L-elsbetiae_contig12740:3165..3186Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12740 3166..3186 -
1691682909.3512084-UTR-L-elsbetiae_contig12740:3165..31861691682909.3512084-UTR-L-elsbetiae_contig12740:3165..3186Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig12740 3166..3186 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12740.2202.1

>prot_L-elsbetiae_contig12740.2202.1 ID=prot_L-elsbetiae_contig12740.2202.1|Name=mRNA_L-elsbetiae_contig12740.2202.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=188bp
MVRTTRRKCSNQCHEAPCIALVAAMVAVSTAAGARTAASYNSNASNALFA
FGAAGGPPASRFGCVGGGNLMARHRVQALSMNLAAAPARSPRAAAAATGT
AGDTGATTDRGVAARPSRRRRRRTETSSGAAQEGVLTVGGTNIGIGIDVG
GMDGRSGGGGGGGGIESLQPTISGFVGVATDGIGGAFS
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mRNA from alignment at L-elsbetiae_contig12740:1834..3186-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12740.2202.1 ID=mRNA_L-elsbetiae_contig12740.2202.1|Name=mRNA_L-elsbetiae_contig12740.2202.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1353bp|location=Sequence derived from alignment at L-elsbetiae_contig12740:1834..3186- (Laminarionema elsbetiae ELsaHSoW15)
CTGTTTCTAGCGAAGCTCATCATGGTACGTACTACAAGACGGAAATGCTC
GAACCAATGCCACGAGGCGCCATGCATCGCATTGGTGGCGGCCATGGTGG
CGGTGTCGACGGCTGCTGGGGCGCGTACAGCTGCGTCATACAACAGCAAT
GCAAGCAATGCCTTGTTTGCTTTTGGAGCAGCAGGCGGGCCGCCGGCGAG
CAGGTTTGGCTGTGTGGGTGGAGGAAACCTGATGGCCAGGCATCGAGTGC
AGGTGAGGAGGATTGCTCTCGGAAGTGCAGGCCTTTCCGCGCATGTTTGT
AAAGGAGGGAGAAGAAGAAATATGTAGTGTTGTCTGCGGGTTGTTTTTTG
GGAGAGGCAGACCCAGGACACAGGAGGACGAGCTTGGCTTCCCGAGACGC
AGAGACAACGAATGACGCGCTTGAGCCGGTAGCGATTGTAAACCCGCGCT
TTCCTCAGATCGTTGTGATGCCTCGAGCAGTACATTCCGCCACTCACAGC
CTGGTGCGTCAGAACCCGCGATCTCGGCATGCTGCGTTCAGACTAGCGTT
TTTATTTCATCTGAGTGCAACAACAGCAAGTGAACAGCTCGTGTCGCCAG
TCTCCTTCACTCCACATTTACATGGAACTATCTACTCTACGTGGGCGTTG
AGGATATGGGCGGGTACTCTCTGGAAAGGCCGCTGTGCTGCTACTGCAAT
TCTGTGCCGAAACTACGTCAATACTCCCCACTCCCTCGCGCTTGCAAGCA
TGTAATATTGAAGTAATTATTAGCTAAAAAGTTCAAGGTTGCACCGCATC
CCCGAGAGTGTTAAATATAAATGAGCGAATCAAAAATGAAACCTAGCCGA
AACATTGGAAATGCGCCTTTGAATTTGCCAACCGATCAAAAATACTGGCC
GGCCGCTGCTTCTCTCTCAAGCCACCACCACGCGCAGTGTCAGCTCTTGT
TTTCGGGAGCACCCACCGACCCCTCTCCCCGCGCACCGCGTGCTGTGTGA
TCATCTGTTCTGGAATTTAGGCGTTGTCGATGAACCTCGCTGCCGCACCG
GCGCGCAGCCCGAGAGCTGCCGCGGCGGCCACGGGGACGGCAGGGGACAC
GGGCGCAACCACGGACCGGGGCGTTGCCGCTCGCCCGAGCCGTAGACGAC
GCCGTCGTACGGAAACCAGCAGTGGTGCGGCGCAAGAAGGGGTGCTCACG
GTCGGTGGCACCAACATCGGGATCGGGATCGATGTTGGTGGGATGGACGG
AAGAAGTGGCGGCGGCGGCGGCGGCGGCGGGATAGAAAGCCTGCAGCCAA
CAATCTCCGGCTTCGTGGGCGTGGCCACGGACGGAATAGGGGGCGCTTTT
TCC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12740:1834..3186-

>mRNA_L-elsbetiae_contig12740.2202.1 ID=mRNA_L-elsbetiae_contig12740.2202.1|Name=mRNA_L-elsbetiae_contig12740.2202.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1128bp|location=Sequence derived from alignment at L-elsbetiae_contig12740:1834..3186- (Laminarionema elsbetiae ELsaHSoW15)
ATGGTACGTACTACAAGACGGAAATGCTCGAACCAATGCCACGAGGCGCC
ATGCATCGCATTGGTGGCGGCCATGGTGGCGGTGTCGACGGCTGCTGGGG
CGCGTACAGCTGCGTCATACAACAGCAATGCAAGCAATGCCTTGTTTGCT
TTTGGAGCAGCAGGCGGGCCGCCGGCGAGCAGGTTTGGCTGTGTGGGTGG
AGGAAACCTGATGGCCAGGCATCGAGTGCAGATGGTACGTACTACAAGAC
GGAAATGCTCGAACCAATGCCACGAGGCGCCATGCATCGCATTGGTGGCG
GCCATGGTGGCGGTGTCGACGGCTGCTGGGGCGCGTACAGCTGCGTCATA
CAACAGCAATGCAAGCAATGCCTTGTTTGCTTTTGGAGCAGCAGGCGGGC
CGCCGGCGAGCAGGTTTGGCTGTGTGGGTGGAGGAAACCTGATGGCCAGG
CATCGAGTGCAGGCGTTGTCGATGAACCTCGCTGCCGCACCGGCGCGCAG
CCCGAGAGCTGCCGCGGCGGCCACGGGGACGGCAGGGGACACGGGCGCAA
CCACGGACCGGGGCGTTGCCGCTCGCCCGAGCCGTAGACGACGCCGTCGT
ACGGAAACCAGCAGTGGTGCGGCGCAAGAAGGGGTGCTCACGGTCGGTGG
CACCAACATCGGGATCGGGATCGATGTTGGTGGGATGGACGGAAGAAGTG
GCGGCGGCGGCGGCGGCGGCGGGATAGAAAGCCTGCAGCCAACAATCTCC
GGCTTCGTGGGCGTGGCCACGGACGGAATAGGGGGCGCTTTTTCCGCGTT
GTCGATGAACCTCGCTGCCGCACCGGCGCGCAGCCCGAGAGCTGCCGCGG
CGGCCACGGGGACGGCAGGGGACACGGGCGCAACCACGGACCGGGGCGTT
GCCGCTCGCCCGAGCCGTAGACGACGCCGTCGTACGGAAACCAGCAGTGG
TGCGGCGCAAGAAGGGGTGCTCACGGTCGGTGGCACCAACATCGGGATCG
GGATCGATGTTGGTGGGATGGACGGAAGAAGTGGCGGCGGCGGCGGCGGC
GGCGGGATAGAAAGCCTGCAGCCAACAATCTCCGGCTTCGTGGGCGTGGC
CACGGACGGAATAGGGGGCGCTTTTTCC
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