mRNA_L-elsbetiae_contig12736.2199.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12736.2199.1
Unique NamemRNA_L-elsbetiae_contig12736.2199.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig12736.2199.1 vs. uniprot
Match: A0A6H5JA78_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA78_9PHAE)

HSP 1 Score: 110 bits (275), Expect = 3.900e-23
Identity = 138/240 (57.50%), Postives = 152/240 (63.33%), Query Frame = 1 
Query:  211 KRISALVLSPEIQAALARGETLADSDSDDDAPDKKPPKIIRRPAGSDPNDLLSLLPQPSTAASADDILLKNRKKREDAKTAKSEGTAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXDGGDDLLAGMHAKSAAAAGSDSGARSGPLFTLPSRARPPPEAVATDLTLPGEEVEAVGAVPSAWDDTAAAXXXXXVAAPGYPAPDRRSAGQQ-WGATDGGHPMASPHGGY 927
            K ++ALVLSPEIQAALARG++L DSDSDD+    K PKI+RRPAGSDP+DLLSLLPQPSTAASAD                       XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX                   S++G+RSGPLFTLPSRARPPP A   D   P + +E V  V  + + TAA         PG       SAGQQ WG  D GH  ASP GGY
Sbjct:   75 KTVNALVLSPEIQAALARGDSLGDSDSDDEDGVAKKPKIVRRPAGSDPSDLLSLLPQPSTAASADXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX---SETGSRSGPLFTLPSRARPPPAAAPADP--PEQGMEEV--VRPSGEGTAAVPGYLETGTPGL------SAGQQQWGGFDRGHAAASPQGGY 301
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BLAST of mRNA_L-elsbetiae_contig12736.2199.1 vs. uniprot
Match: D8LC39_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LC39_ECTSI)

HSP 1 Score: 66.2 bits (160), Expect = 1.170e-8
Identity = 57/110 (51.82%), Postives = 62/110 (56.36%), Query Frame = 1 
Query:  628 MHAKSAAAAG--SDSGARSGPLFTLPSRARPPPEAVATDLTLPGEEVEAVGAVPSAWDDTAAAXXXXXVAAPGYPAPDRRSAGQQ-WGATDGGHPMASPHGGYGEVGAGG 948
            MHAKSAAAA   S++G++SGPLFTLPSRARPPP A   D   P EE       PS  +DTAA         PG       SAGQQ WG  D GH  A P G Y   GAGG
Sbjct:    1 MHAKSAAAAAAASETGSKSGPLFTLPSRARPPPAAAPAD---PPEEGMGELVRPSG-EDTAAVPRHLETGTPGP------SAGQQQWGGFDRGHAAAFPQGSY--AGAGG 98
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12736.2199.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JA78_9PHAE3.900e-2357.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LC39_ECTSI1.170e-851.82Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12736contigL-elsbetiae_contig12736:3535..4820 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1091
Cds size1089
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815461.965804-CDS-L-elsbetiae_contig12736:3534..36361622815461.965804-CDS-L-elsbetiae_contig12736:3534..3636Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12736 3535..3636 -
1691682909.2842128-CDS-L-elsbetiae_contig12736:3534..36361691682909.2842128-CDS-L-elsbetiae_contig12736:3534..3636Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12736 3535..3636 -
1622815461.9767237-CDS-L-elsbetiae_contig12736:3833..48201622815461.9767237-CDS-L-elsbetiae_contig12736:3833..4820Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12736 3834..4820 -
1691682909.2934506-CDS-L-elsbetiae_contig12736:3833..48201691682909.2934506-CDS-L-elsbetiae_contig12736:3833..4820Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12736 3834..4820 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12736.2199.1prot_L-elsbetiae_contig12736.2199.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12736 3535..4820 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12736.2199.1

>prot_L-elsbetiae_contig12736.2199.1 ID=prot_L-elsbetiae_contig12736.2199.1|Name=mRNA_L-elsbetiae_contig12736.2199.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=363bp
HSATIEPPKGKGKARAYPAAVPAQASTAKQQQQQPTEDASKKNRKGRSSC
SSSSKKKKKKKTATKRKKESKRISALVLSPEIQAALARGETLADSDSDDD
APDKKPPKIIRRPAGSDPNDLLSLLPQPSTAASADDILLKNRKKREDAKT
AKSEGTAAAAAAVSTAPASTKAAPAPAPASVGVGGGVGDDDEPDQESDSD
DGGDDLLAGMHAKSAAAAGSDSGARSGPLFTLPSRARPPPEAVATDLTLP
GEEVEAVGAVPSAWDDTAAAAAAAAVAAPGYPAPDRRSAGQQWGATDGGH
PMASPHGGYGEVGAGGGAQYATYGATSGQQQQQQPSYYQPATAQAAAGFG
GAVQHGAGAHEAE
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mRNA from alignment at L-elsbetiae_contig12736:3535..4820-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12736.2199.1 ID=mRNA_L-elsbetiae_contig12736.2199.1|Name=mRNA_L-elsbetiae_contig12736.2199.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1286bp|location=Sequence derived from alignment at L-elsbetiae_contig12736:3535..4820- (Laminarionema elsbetiae ELsaHSoW15)
CATTCCGCAACAATAGAGCCACCAAAGGGCAAGGGCAAGGCACGAGCATA
TCCCGCAGCAGTACCGGCACAAGCGTCCACCGCCAAGCAGCAGCAGCAGC
AACCGACCGAGGATGCCAGCAAGAAGAATCGGAAGGGAAGAAGCAGCTGC
AGTAGTAGCAGCAAGAAGAAGAAGAAGAAGAAGACGGCCACCAAGAGGAA
AAAGGAGAGCAAGAGGATCAGCGCGCTGGTCCTGTCCCCCGAGATCCAAG
CTGCACTCGCCCGCGGAGAGACGCTCGCAGACAGCGACTCGGACGACGAC
GCCCCCGACAAGAAGCCGCCAAAAATCATCCGCAGACCCGCTGGGAGCGA
CCCGAATGACCTGCTGTCGCTGCTGCCACAGCCCTCCACGGCCGCGAGCG
CGGACGATATTCTCCTCAAGAATCGAAAGAAGAGAGAGGACGCGAAGACA
GCCAAGTCCGAAGGAACAGCAGCAGCAGCAGCAGCCGTCTCGACAGCTCC
AGCATCAACAAAGGCAGCACCAGCACCAGCACCGGCATCAGTAGGAGTCG
GTGGAGGGGTGGGAGACGATGACGAACCAGACCAGGAGTCAGACTCGGAC
GACGGCGGAGATGACCTTCTCGCCGGGATGCACGCGAAATCAGCGGCGGC
AGCCGGGTCGGACTCCGGCGCCAGGAGCGGCCCTCTGTTCACCCTCCCGT
CCCGCGCAAGACCACCACCCGAGGCGGTGGCCACTGATCTAACTCTGCCG
GGAGAAGAAGTTGAGGCGGTGGGCGCGGTGCCGTCTGCCTGGGATGACAC
AGCAGCAGCAGCAGCAGCAGCAGCAGTAGCGGCCCCGGGGTACCCCGCGC
CAGACCGCCGTAGTGCGGGACAGCAATGGGGTGCCACAGATGGCGGGCAC
CCGATGGCGTCTCCGCACGGGGGCTACGGTGAAGTGGGGGCAGGAGGAGG
CGCACAGTACGCCACTTATGGGGCTACTTCAGGCCAGGTGTGTAGGTTTG
GACATTTTCGGAGTTACAGAGTATGCACTTGCCGAGTTTCATCCGGTGGT
GTGTAATAACTATCAGTTGCCCCCCCCGCGTGCACACACATGGGGCAAGA
GAGAGAGAGAGAGATGCGTAGCTGAATCAGCAGCACCTTTTTATGCGCCT
ATCCCCCATTATCCTGCCATCGTCACCATTGCAGCAGCAGCAACAGCAAC
CGTCATACTATCAACCCGCTACGGCTCAAGCGGCGGCGGGCTTTGGAGGA
GCGGTGCAGCACGGGGCGGGGGCGCACGAGGCGGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12736:3535..4820-

>mRNA_L-elsbetiae_contig12736.2199.1 ID=mRNA_L-elsbetiae_contig12736.2199.1|Name=mRNA_L-elsbetiae_contig12736.2199.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2178bp|location=Sequence derived from alignment at L-elsbetiae_contig12736:3535..4820- (Laminarionema elsbetiae ELsaHSoW15)
CATTCCGCAACAATAGAGCCACCAAAGGGCAAGGGCAAGGCACGAGCATA
TCCCGCAGCAGTACCGGCACAAGCGTCCACCGCCAAGCAGCAGCAGCAGC
AACCGACCGAGGATGCCAGCAAGAAGAATCGGAAGGGAAGAAGCAGCTGC
AGTAGTAGCAGCAAGAAGAAGAAGAAGAAGAAGACGGCCACCAAGAGGAA
AAAGGAGAGCAAGAGGATCAGCGCGCTGGTCCTGTCCCCCGAGATCCAAG
CTGCACTCGCCCGCGGAGAGACGCTCGCAGACAGCGACTCGGACGACGAC
GCCCCCGACAAGAAGCCGCCAAAAATCATCCGCAGACCCGCTGGGAGCGA
CCCGAATGACCTGCTGTCGCTGCTGCCACAGCCCTCCACGGCCGCGAGCG
CGGACGATATTCTCCTCAAGAATCGAAAGAAGAGAGAGGACGCGAAGACA
GCCAAGTCCGAAGGAACAGCAGCAGCAGCAGCAGCCGTCTCGACAGCTCC
AGCATCAACAAAGGCAGCACCAGCACCAGCACCGGCATCAGTAGGAGTCG
GTGGAGGGGTGGGAGACGATGACGAACCAGACCAGGAGTCAGACTCGGAC
GACGGCGGAGATGACCTTCTCGCCGGGATGCACGCGAAATCAGCGGCGGC
AGCCGGGTCGGACTCCGGCGCCAGGAGCGGCCCTCTGTTCACCCTCCCGT
CCCGCGCAAGACCACCACCCGAGGCGGTGGCCACTGATCTAACTCTGCCG
GGAGAAGAAGTTGAGGCGGTGGGCGCGGTGCCGTCTGCCTGGGATGACAC
AGCAGCAGCAGCAGCAGCAGCAGCAGTAGCGGCCCCGGGGTACCCCGCGC
CAGACCGCCGTAGTGCGGGACAGCAATGGGGTGCCACAGATGGCGGGCAC
CCGATGGCGTCTCCGCACGGGGGCTACGGTGAAGTGGGGGCAGGAGGAGG
CGCACAGTACGCCACTTATGGGGCTACTTCAGGCCAGCATTCCGCAACAA
TAGAGCCACCAAAGGGCAAGGGCAAGGCACGAGCATATCCCGCAGCAGTA
CCGGCACAAGCGTCCACCGCCAAGCAGCAGCAGCAGCAACCGACCGAGGA
TGCCAGCAAGAAGAATCGGAAGGGAAGAAGCAGCTGCAGTAGTAGCAGCA
AGAAGAAGAAGAAGAAGAAGACGGCCACCAAGAGGAAAAAGGAGAGCAAG
AGGATCAGCGCGCTGGTCCTGTCCCCCGAGATCCAAGCTGCACTCGCCCG
CGGAGAGACGCTCGCAGACAGCGACTCGGACGACGACGCCCCCGACAAGA
AGCCGCCAAAAATCATCCGCAGACCCGCTGGGAGCGACCCGAATGACCTG
CTGTCGCTGCTGCCACAGCCCTCCACGGCCGCGAGCGCGGACGATATTCT
CCTCAAGAATCGAAAGAAGAGAGAGGACGCGAAGACAGCCAAGTCCGAAG
GAACAGCAGCAGCAGCAGCAGCCGTCTCGACAGCTCCAGCATCAACAAAG
GCAGCACCAGCACCAGCACCGGCATCAGTAGGAGTCGGTGGAGGGGTGGG
AGACGATGACGAACCAGACCAGGAGTCAGACTCGGACGACGGCGGAGATG
ACCTTCTCGCCGGGATGCACGCGAAATCAGCGGCGGCAGCCGGGTCGGAC
TCCGGCGCCAGGAGCGGCCCTCTGTTCACCCTCCCGTCCCGCGCAAGACC
ACCACCCGAGGCGGTGGCCACTGATCTAACTCTGCCGGGAGAAGAAGTTG
AGGCGGTGGGCGCGGTGCCGTCTGCCTGGGATGACACAGCAGCAGCAGCA
GCAGCAGCAGCAGTAGCGGCCCCGGGGTACCCCGCGCCAGACCGCCGTAG
TGCGGGACAGCAATGGGGTGCCACAGATGGCGGGCACCCGATGGCGTCTC
CGCACGGGGGCTACGGTGAAGTGGGGGCAGGAGGAGGCGCACAGTACGCC
ACTTATGGGGCTACTTCAGGCCAGCAGCAGCAACAGCAACCGTCATACTA
TCAACCCGCTACGGCTCAAGCGGCGGCGGGCTTTGGAGGAGCGGTGCAGC
ACGGGGCGGGGGCGCACGAGGCGGAGCAGCAGCAACAGCAACCGTCATAC
TATCAACCCGCTACGGCTCAAGCGGCGGCGGGCTTTGGAGGAGCGGTGCA
GCACGGGGCGGGGGCGCACGAGGCGGAG
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