mRNA_L-elsbetiae_contig12724.2194.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12724.2194.1
Unique NamemRNA_L-elsbetiae_contig12724.2194.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig12724.2194.1 vs. uniprot
Match: D8LDJ3_ECTSI (DNA helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LDJ3_ECTSI)

HSP 1 Score: 71.6 bits (174), Expect = 1.820e-12
Identity = 36/43 (83.72%), Postives = 38/43 (88.37%), Query Frame = 1 
Query:   88 YDEDEDAYLVPSDWEDDGNDEDWDAGGTSGRRARDLQKNLTAS 216
            +DEDEDAYLVPSDWED     DW+AGGTSGRRARDLQKNLTAS
Sbjct:   23 FDEDEDAYLVPSDWEDXXXXXDWNAGGTSGRRARDLQKNLTAS 65
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12724.2194.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LDJ3_ECTSI1.820e-1283.72DNA helicase n=2 Tax=Ectocarpus TaxID=2879 RepID=D... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12724contigL-elsbetiae_contig12724:1419..4855 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score73.2
Seed ortholog evalue7.7e-11
Seed eggNOG ortholog2880.D8LDJ3
Preferred nameERCC3
KEGG koko:K10843,ko:K11270
KEGG Pathwayko03022,ko03420,map03022,map03420
KEGG ModuleM00290
Hectar predicted targeting categoryother localisation
GOsGO:0000018,GO:0000019,GO:0000109,GO:0000112,GO:0000166,GO:0000428,GO:0000439,GO:0000717,GO:0000988,GO:0000990,GO:0000991,GO:0001109,GO:0001111,GO:0001112,GO:0001113,GO:0001120,GO:0001666,GO:0003674,GO:0003676,GO:0003677,GO:0003678,GO:0003684,GO:0003824,GO:0004003,GO:0004386,GO:0005488,GO:0005515,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005654,GO:0005667,GO:0005669,GO:0005675,GO:0005737,GO:0005829,GO:0006139,GO:0006259,GO:0006265,GO:0006281,GO:0006283,GO:0006289,GO:0006293,GO:0006294,GO:0006296,GO:0006351,GO:0006352,GO:0006353,GO:0006354,GO:0006355,GO:0006357,GO:0006360,GO:0006361,GO:0006363,GO:0006366,GO:0006367,GO:0006368,GO:0006370,GO:0006396,GO:0006397,GO:0006403,GO:0006405,GO:0006406,GO:0006464,GO:0006468,GO:0006611,GO:0006725,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006886,GO:0006913,GO:0006915,GO:0006950,GO:0006974,GO:0006979,GO:0006996,GO:0007275,GO:0007346,GO:0007399,GO:0008022,GO:0008026,GO:0008094,GO:0008104,GO:0008134,GO:0008144,GO:0008150,GO:0008152,GO:0008219,GO:0008544,GO:0009058,GO:0009059,GO:0009314,GO:0009411,GO:0009416,GO:0009452,GO:0009628,GO:0009650,GO:0009790,GO:0009888,GO:0009889,GO:0009891,GO:0009893,GO:0009913,GO:0009987,GO:0010224,GO:0010467,GO:0010468,GO:0010525,GO:0010528,GO:0010556,GO:0010557,GO:0010564,GO:0010604,GO:0010628,GO:0010941,GO:0010942,GO:0012501,GO:0015031,GO:0015616,GO:0015833,GO:0015931,GO:0016043,GO:0016070,GO:0016071,GO:0016310,GO:0016462,GO:0016591,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0016973,GO:0017076,GO:0017111,GO:0018130,GO:0019219,GO:0019222,GO:0019438,GO:0019538,GO:0022008,GO:0022607,GO:0030154,GO:0030182,GO:0030554,GO:0030855,GO:0030880,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0031334,GO:0031503,GO:0031974,GO:0031981,GO:0032392,GO:0032501,GO:0032502,GO:0032508,GO:0032553,GO:0032555,GO:0032559,GO:0032774,GO:0032806,GO:0032991,GO:0032993,GO:0033036,GO:0033554,GO:0033683,GO:0034367,GO:0034613,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0035315,GO:0035639,GO:0036094,GO:0036211,GO:0036260,GO:0036293,GO:0040008,GO:0042127,GO:0042623,GO:0042886,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043138,GO:0043140,GO:0043167,GO:0043168,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043254,GO:0043412,GO:0043933,GO:0044085,GO:0044087,GO:0044089,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044267,GO:0044271,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044451,GO:0044464,GO:0044798,GO:0045184,GO:0045893,GO:0045935,GO:0045944,GO:0046483,GO:0046907,GO:0047485,GO:0048513,GO:0048518,GO:0048522,GO:0048568,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050657,GO:0050658,GO:0050789,GO:0050794,GO:0050896,GO:0051028,GO:0051052,GO:0051098,GO:0051101,GO:0051128,GO:0051130,GO:0051168,GO:0051169,GO:0051171,GO:0051173,GO:0051179,GO:0051234,GO:0051236,GO:0051252,GO:0051254,GO:0051276,GO:0051641,GO:0051649,GO:0051716,GO:0051726,GO:0055029,GO:0060255,GO:0060429,GO:0061695,GO:0065003,GO:0065004,GO:0065007,GO:0065009,GO:0070013,GO:0070035,GO:0070482,GO:0070727,GO:0070816,GO:0070911,GO:0071103,GO:0071166,GO:0071426,GO:0071427,GO:0071702,GO:0071704,GO:0071705,GO:0071824,GO:0071840,GO:0080090,GO:0090304,GO:0090305,GO:0090575,GO:0097159,GO:0097367,GO:0097550,GO:0097659,GO:0140097,GO:0140110,GO:1901265,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901576,GO:1901987,GO:1901990,GO:1902494,GO:1902554,GO:1902680,GO:1902911,GO:1903025,GO:1903506,GO:1903508,GO:1990234,GO:1990391,GO:2000112,GO:2000677,GO:2001141
EggNOG free text desc.ATP-dependent DNA helicase activity
EggNOG OGsCOG1061@1,KOG1123@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko03021,ko03036,ko03400
Exons3
Model size297
Cds size294
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12724.2194.1prot_L-elsbetiae_contig12724.2194.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12724 1420..4855 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815461.5196166-CDS-L-elsbetiae_contig12724:1419..15001622815461.5196166-CDS-L-elsbetiae_contig12724:1419..1500Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12724 1420..1500 -
1691682908.9746237-CDS-L-elsbetiae_contig12724:1419..15001691682908.9746237-CDS-L-elsbetiae_contig12724:1419..1500Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12724 1420..1500 -
1622815461.5322611-CDS-L-elsbetiae_contig12724:2416..25611622815461.5322611-CDS-L-elsbetiae_contig12724:2416..2561Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12724 2417..2561 -
1691682908.9886818-CDS-L-elsbetiae_contig12724:2416..25611691682908.9886818-CDS-L-elsbetiae_contig12724:2416..2561Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12724 2417..2561 -
1622815461.543355-CDS-L-elsbetiae_contig12724:4787..48551622815461.543355-CDS-L-elsbetiae_contig12724:4787..4855Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12724 4788..4855 -
1691682909.0012715-CDS-L-elsbetiae_contig12724:4787..48551691682909.0012715-CDS-L-elsbetiae_contig12724:4787..4855Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12724 4788..4855 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12724.2194.1

>prot_L-elsbetiae_contig12724.2194.1 ID=prot_L-elsbetiae_contig12724.2194.1|Name=mRNA_L-elsbetiae_contig12724.2194.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=98bp
PKTHWAAEEGYHTMSKRRKSSSRNRGGGGYDEDEDAYLVPSDWEDDGNDE
DWDAGGTSGRRARDLQKNLTASGGGSKGGAGKSKSSKQQQQQQQQKNR
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mRNA from alignment at L-elsbetiae_contig12724:1419..4855-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12724.2194.1 ID=mRNA_L-elsbetiae_contig12724.2194.1|Name=mRNA_L-elsbetiae_contig12724.2194.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3437bp|location=Sequence derived from alignment at L-elsbetiae_contig12724:1419..4855- (Laminarionema elsbetiae ELsaHSoW15)
CCCAAGACACATTGGGCTGCTGAGGAGGGATATCACACAATGAGCAAACG
GCGTAAGTCGAGCAGCAGGTGAGGCGAACTGGTCGTGTTTTTGCCACTTG
ACTTCTCCAACACAGCAGTCAACGAGAAGCAAGGTGTGCAGCTCTCTCTC
TCGCTACAAATAATGCTATCGGTCCCGAACAGACATGAGACAAGCTTGGT
CGTGCAGAACAGCAGTAGCGCTGGCAGATAAATATCGTGAGAGTGGTTGC
TACTTGCCCTTGTCTCTGCAGCACTCAGAGGCCCAAAAGCTTCATGTACG
CACACCGCAAACATCTCCTGATTTTGGAGCAAGAGGTTGGTGAAGCACCG
GCACACACACGCATCTTCGTCGATCTATTACAGAGGTGCACCACCAACGC
TCCAGTGTTCCAGCGACTGATCGCAGATTTTTTAAGGATTCCGTCGCTTT
CTCTATTTCTGCTATGCACCCGCGCCGATGACCAGCACTCTCGCCCCCCA
GTTCCACGGCACAGGCTCCAAGCGAGCGTCGGAATCATCTCACATTTTGA
CAGTCCCGCGCTGGCAATTTCAGGTTCATTTGCCGCCTCCAGACTAGACT
TGTCTATTTTGCTGTGTTATACATACACAGCTGATTTGTAATTACGGGTT
AGACAGATTTGACGTAGCAGCGACTGGTGCCTTGAGGAGGGGGGTTGCTT
TGGCAGGCAGGCGCGGCATGTGGACCGGAGCACGGAAAGTTTACTGGGGA
CATATCGGGCACTGGTCTGCAGAACGGCCCCTCGACCCCGCTAATTACCG
TAGGTGACACAAGATACCACACCCCCTGGACCGAATTTTAGAGTTCCATT
ACTCCGTAACGAAGAAGGTGCCAGCTCCAAACAACACATTTTCGGACAGC
CCTTGACTAGATATTTCCAATGCCACCCTTTTTGGCACTGGCACTCTTCT
TGCGGGGGAGGAATCGAGCTTTGAAAATCTGTCCAGGGGGTGTGGTATCT
TGTGTCACCTACGGTAGGCAAGCAACTCTTTAATAAAAACATAAATGAAT
CAAACTCTCGACACGTGTCTTTGTTTACATACAAGAGCATGCATGTTAAA
AATCAGAAGGACCTAATGCCGTCTGGCGAGCCCTATCAACAAGTAGTTTT
TAAAGTTTTTAAAGAAATGTTAGTGTTCCGCGAGACTAAATGTGTCAGCG
GCTTCGCCGAATTGTGAAAGCGTCGTTAATGCCGCCTCGTCCTCTTGAGT
GCGGGTTGTTATTGCGCGGTCCGCTCCTCGCCCTCAGCGAGGTATGCGCC
GAGTATGGTTACTGTATTAACCCAGGAACAGCAGGTGACAGGTGTTATGC
GTAGAAACACGTAATAGGAGGCAAGTTTCGTGAGTTCGGTGACTCTCTCT
CTCTCCCCGCGGGATCCACCTGCACATACCCACCCACACACACGTAGCCC
CCCCTGACGGGACACACAGATGGGACTCATATCCAAAATGCACGGAGAAC
TCGGGTCTTCATTTTTGAAGCCCGGTTTCTTTGTATGTACAGCAGTGCTG
TCTGCTGTCTGCTGTCTACTACTGTACAGCAATGGCAAGGATGTGTGCAA
CCGCAACGGTATGCGTTCGGAAAGATCTTGACAACAGAAACACGAAGACA
AGACATCTCACACAAGGCGAGGCACGAGGCAGACACCCAGAAAATACGCT
GACGCCAGTTCGTCTACGTGCCGTAGGTGACACAAGATACCACCCCCTCC
CTGGACCGACTTTTTAGAGCTCCATTACTCCGTGTAACGAAAGGGGTGCC
AGCACCAAACGACACATTTTCGGACACCCCTTGACTAGATATTTCCAACG
CCACGCCCTTTTTGGCACTGGCACTCTTCTTGCCGGGGATGAATCGAGCT
TTGAAAATATGTCCAGGGGGGTCAGTATCTTGTGCCGACCGACTCTTAGA
GCTCCATTACTCCGTAACGAAGAGGGCGCCAGCACCAAACGACACATTTT
CGGACAGCCCTCGACTAGATCTTTCCAACGCCACCACTCCCTTTCGGCAC
TGGCACTCTTCATGCCGGGGAGGAATCGAGCTTTGAAAATCTGTCCAGGG
GGGGGGGCGGTACCTTGTGTCCCCTACGGTAGCTAGCTTCATCACGTCAT
AACAGAAGCCGCGCACAGCTTGGTGCTACTAGACTTTAACCCCAATCGGC
GGTAAGGGTAATGGTAATGGTCGTGGTCTGATCAACCCGTTTCCGGGCGC
CTGCCGCCTCTGTCTCCGGTTTTCGTGTGGGGGGCATGTGCCAGGAATCG
CGGCGGGGGGGGGTATGACGAGGACGAGGACGCGTACTTGGTCCCGAGCG
ACTGGGAGGATGACGGCAATGACGAGGATTGGGACGCCGGCGGGACATCG
GGCAGGCGGGCGAGGGATTTGCAGAAGAATCTGACGGCGGTGTGTGTTTC
TCTCTCTCTCTCTACGTCTCTGTCTGTCTGTATGTCTGTCTGTATGTCTG
TCTGTCTGTTTGTCTCTCTCTCTCTCTCTCTCTCTCTCTATATATATATA
TATATAATCTCTGTCTCTCTGTGTATCTCTGTCTATCTCTGTCTCTCTCT
CTCTCTCTGTCTCTCTCTCTCTATCTATCTATCTCTCTCTCGCTCTCGCT
CTCTCTCTCTCTATCTATCTCTCTCTCGCTCTCGCTCTCGCTCTCGCTCT
CGCTCTCTCTCTCGCTCTCTTGTTGAAGTCCTCGGCCAGTGCTGAACAGC
AAGATCAGAGCAGGGTTGGGTATAGACTATCTGCGGAGCAATTTGCTAAA
ACCTGTAACGAACGTTTTTTTCGTTACGTTTGAGGTTGTTAAATGTGATT
TTCCCACCTGGTAGCTAGCGAGCCCCAGCTTTTCTTTTCAGGATACGTAT
GTGCATACGCGTCCAAGCAAGTTTTCATGGTGATTTTGACATTTGAAGTT
TTTTGAAGCCCATGTTTCTTCTCGCAGAGAACGGCAGCGACGTTTGCTGT
TGAGCCCCAGCCTACTTATATACCATTCTGCAGTTTTACAGCGGCGTCTA
GGCGTCTCAGGCGGGAGATTGAGATTGCGCCGGTTTTCTCGATCTTCGTC
CTTTTTTCGGCTGAATCGCACGAGTAGACCGACAACCATGTCAGTCTGTT
GTTCTAGCCCTGCTCCCCCTTTGTAGCCCTGCTGTTCACTTACCCTCTCT
CAGCACGGTAGGTAGCCTTGGGAAGGACGGGATCGCTAATCGACTGCACC
GCACCCGGGGGCACATGAGATGGCTGACCATACACCGGGGGTTCCAACGC
TACCCCCACCCCCCTGCACCGCCATGCCGATTTTTTCGTGTACTCTCGTT
TTAAGTCTGGAGGAGGGTCAAAGGGCGGCGCCGGTAAGAGCAAGTCCAGC
AAGCAGCAGCAGCAGCAGCAGCAGCAGAAGAACCGGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12724:1419..4855-

>mRNA_L-elsbetiae_contig12724.2194.1 ID=mRNA_L-elsbetiae_contig12724.2194.1|Name=mRNA_L-elsbetiae_contig12724.2194.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=588bp|location=Sequence derived from alignment at L-elsbetiae_contig12724:1419..4855- (Laminarionema elsbetiae ELsaHSoW15)
CCCAAGACACATTGGGCTGCTGAGGAGGGATATCACACAATGAGCAAACG
GCGTAAGTCGAGCAGCAGCCCAAGACACATTGGGCTGCTGAGGAGGGATA
TCACACAATGAGCAAACGGCGTAAGTCGAGCAGCAGGAATCGCGGCGGGG
GGGGGTATGACGAGGACGAGGACGCGTACTTGGTCCCGAGCGACTGGGAG
GATGACGGCAATGACGAGGATTGGGACGCCGGCGGGACATCGGGCAGGCG
GGCGAGGGATTTGCAGAAGAATCTGACGGCGGAATCGCGGCGGGGGGGGG
TATGACGAGGACGAGGACGCGTACTTGGTCCCGAGCGACTGGGAGGATGA
CGGCAATGACGAGGATTGGGACGCCGGCGGGACATCGGGCAGGCGGGCGA
GGGATTTGCAGAAGAATCTGACGGCGTCTGGAGGAGGGTCAAAGGGCGGC
GCCGGTAAGAGCAAGTCCAGCAAGCAGCAGCAGCAGCAGCAGCAGCAGAA
GAACCGGTCTGGAGGAGGGTCAAAGGGCGGCGCCGGTAAGAGCAAGTCCA
GCAAGCAGCAGCAGCAGCAGCAGCAGCAGAAGAACCGG
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