mRNA_L-elsbetiae_contig12711.2178.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig12711.2178.1 vs. uniprot
Match: D7FLR7_ECTSI (Histone hairpin binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLR7_ECTSI) HSP 1 Score: 139 bits (351), Expect = 2.240e-35 Identity = 66/102 (64.71%), Postives = 79/102 (77.45%), Query Frame = 1 Query: 157 EVDGLELPRHLLGQKPDFEAEGGGRGEELKFADNVEVDPHRLAVRQRQIDFGRNTLGYETYLEKVPRKKRRRADPTTPDKTEKMSKRRWDGKVRCGLNPLSQ 462 E + ELPRHLLG+KPDFEAEGGG+GE LKFA + E DPHR+A RQ+QIDFG+NT GY+ YL VPR KR R DP TP+K +KMSKRRWDG++R L + Sbjct: 883 EEEVKELPRHLLGKKPDFEAEGGGQGEALKFASDREEDPHRIAQRQKQIDFGKNTSGYDRYLAAVPRNKRSRGDPKTPNKEKKMSKRRWDGQIRSWRRQLHE 984
BLAST of mRNA_L-elsbetiae_contig12711.2178.1 vs. uniprot
Match: A0A7S2JLD2_9EUKA (Hypothetical protein n=1 Tax=Cyanoptyche gloeocystis TaxID=77922 RepID=A0A7S2JLD2_9EUKA) HSP 1 Score: 88.6 bits (218), Expect = 1.480e-17 Identity = 47/88 (53.41%), Postives = 57/88 (64.77%), Query Frame = 1 Query: 178 PRHLLG-QKPDFEAEGGGRGEELKFADNVEVDPHRLAVRQRQIDFGRNTLGYETYLEKVPRKKRRRADPTTPDKTEKMSKRRWDGKVR 438 PR + +P+ + G R L + EVD HRLA RQ+QI +G+NTLGYE YLE VPR KR++ DP TPDK K SKR WDG VR Sbjct: 382 PRRVFSTSRPETSIKDGSRSNNLDREER-EVDVHRLAQRQKQIAYGKNTLGYEKYLELVPRNKRKKGDPQTPDKHRKYSKRAWDGLVR 468
BLAST of mRNA_L-elsbetiae_contig12711.2178.1 vs. uniprot
Match: H3GRU1_PHYRM (SLBP_RNA_bind domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GRU1_PHYRM) HSP 1 Score: 82.8 bits (203), Expect = 1.390e-16 Identity = 42/74 (56.76%), Postives = 55/74 (74.32%), Query Frame = 1 Query: 223 GGRGEELK-FADNVEVDPHRLAVRQRQIDFGRNTLGYETYLEKVPRKKRRRA-DPTTPDKTEKMSKRRWDGKVR 438 G +G E++ AD E DPHRLA RQ+QID+G+NT+GY+ Y +VPR +RR PTTPDKT+KM K+ +DG VR Sbjct: 48 GAKGAEVRTLADEKEADPHRLAQRQKQIDYGKNTIGYDLYCAQVPRHQRRPGRHPTTPDKTKKMGKKVFDGIVR 121
BLAST of mRNA_L-elsbetiae_contig12711.2178.1 vs. uniprot
Match: A0A388KFE1_CHABU (SLBP_RNA_bind domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388KFE1_CHABU) HSP 1 Score: 82.8 bits (203), Expect = 1.830e-16 Identity = 38/59 (64.41%), Postives = 45/59 (76.27%), Query Frame = 1 Query: 262 EVDPHRLAVRQRQIDFGRNTLGYETYLEKVPRKKRRRADPTTPDKTEKMSKRRWDGKVR 438 E D HR++ RQ+QIDFG+NTLGY Y E VPRKKR+R DP TPD + SKR WDG+VR Sbjct: 54 ETDKHRISQRQKQIDFGKNTLGYGRYFELVPRKKRKRGDPQTPDPYQVCSKRSWDGQVR 112
BLAST of mRNA_L-elsbetiae_contig12711.2178.1 vs. uniprot
Match: A0A8K1CNZ8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CNZ8_PYTOL) HSP 1 Score: 82.0 bits (201), Expect = 2.080e-16 Identity = 39/66 (59.09%), Postives = 51/66 (77.27%), Query Frame = 1 Query: 262 EVDPHRLAVRQRQIDFGRNTLGYETYLEKVPRKKRRRAD-PTTPDKTEKMSKRRWDGKVRCGLNPL 456 E DPHRLA RQ+QID+G+NTLGY+ Y +VPR++RRR + P TPDKT K+SK+R+DG +R L Sbjct: 48 ETDPHRLAQRQKQIDYGKNTLGYDRYCAQVPRRERRRGEHPMTPDKTLKVSKKRFDGMIRVWRQAL 113
BLAST of mRNA_L-elsbetiae_contig12711.2178.1 vs. uniprot
Match: A0A1V9YXU1_9STRA (SLBP_RNA_bind domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YXU1_9STRA) HSP 1 Score: 82.0 bits (201), Expect = 2.210e-16 Identity = 37/68 (54.41%), Postives = 51/68 (75.00%), Query Frame = 1 Query: 262 EVDPHRLAVRQRQIDFGRNTLGYETYLEKVPRKKRR-RADPTTPDKTEKMSKRRWDGKVRCGLNPLSQ 462 E+DPH+L+ RQ+QIDFG+NT+GY+ Y++ VP+ KR + P TPDKT+ MSKR WDG++R L Q Sbjct: 72 EMDPHKLSQRQKQIDFGKNTIGYDRYIQLVPKNKRNTKIHPMTPDKTKMMSKRAWDGRIRVWRAALHQ 139
BLAST of mRNA_L-elsbetiae_contig12711.2178.1 vs. uniprot
Match: A0A2K3DQ09_CHLRE (SLBP_RNA_bind domain-containing protein n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3DQ09_CHLRE) HSP 1 Score: 85.1 bits (209), Expect = 2.480e-16 Identity = 38/59 (64.41%), Postives = 49/59 (83.05%), Query Frame = 1 Query: 259 VEVDPHRLAVRQRQIDFGRNTLGYETYLEKVPRKKRRRADPTTPDKTEKMSKRRWDGKV 435 +++DPHRLA RQ+QIDFG+NT+GY+ YL+ VPR KRRR DP TPD +SKRR+DG+V Sbjct: 95 LDLDPHRLAQRQKQIDFGKNTVGYQRYLQLVPRNKRRRTDPATPDINANISKRRFDGQV 153
BLAST of mRNA_L-elsbetiae_contig12711.2178.1 vs. uniprot
Match: A0A835WHY4_9CHLO (SLBP_RNA_bind domain-containing protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835WHY4_9CHLO) HSP 1 Score: 84.3 bits (207), Expect = 4.570e-16 Identity = 38/59 (64.41%), Postives = 49/59 (83.05%), Query Frame = 1 Query: 259 VEVDPHRLAVRQRQIDFGRNTLGYETYLEKVPRKKRRRADPTTPDKTEKMSKRRWDGKV 435 +++DPHRLA RQ+QIDFG+NT+GY+ YL+ VPR KRRR DP TPD +SKRR+DG+V Sbjct: 77 LDLDPHRLAQRQKQIDFGKNTVGYQRYLQLVPRNKRRRTDPATPDIHANISKRRFDGQV 135
BLAST of mRNA_L-elsbetiae_contig12711.2178.1 vs. uniprot
Match: T0QH70_SAPDV (SLBP_RNA_bind domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QH70_SAPDV) HSP 1 Score: 81.6 bits (200), Expect = 5.200e-16 Identity = 37/66 (56.06%), Postives = 51/66 (77.27%), Query Frame = 1 Query: 262 EVDPHRLAVRQRQIDFGRNTLGYETYLEKVPRKKRRRA-DPTTPDKTEKMSKRRWDGKVRCGLNPL 456 E DPH+LA RQ+QIDFG+NT+GY+ Y + VPR +R++ P+TPDKT+ +SKR WDG+VR + L Sbjct: 105 ETDPHKLAQRQKQIDFGKNTIGYDRYTQLVPRSERKQGLHPSTPDKTQAISKRMWDGRVRVWRSAL 170
BLAST of mRNA_L-elsbetiae_contig12711.2178.1 vs. uniprot
Match: A0A067CQY0_SAPPC (SLBP_RNA_bind domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CQY0_SAPPC) HSP 1 Score: 81.6 bits (200), Expect = 6.780e-16 Identity = 37/66 (56.06%), Postives = 51/66 (77.27%), Query Frame = 1 Query: 262 EVDPHRLAVRQRQIDFGRNTLGYETYLEKVPRKKRRRA-DPTTPDKTEKMSKRRWDGKVRCGLNPL 456 E DPH+LA RQ+QIDFG+NT+GY+ Y + VPR +R++ P+TPDKT+ +SKR WDG+VR + L Sbjct: 121 ETDPHKLAQRQKQIDFGKNTIGYDRYTQLVPRNERKQGVHPSTPDKTQAISKRMWDGRVRVWRSAL 186 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12711.2178.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig12711.2178.1 >prot_L-elsbetiae_contig12711.2178.1 ID=prot_L-elsbetiae_contig12711.2178.1|Name=mRNA_L-elsbetiae_contig12711.2178.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=156bp RGPVAEARGGPAARSPLSRRGQQQQQPQAKRDGEAGAGGGANKRKAAAAEback to top mRNA from alignment at L-elsbetiae_contig12711:2721..4481+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig12711.2178.1 ID=mRNA_L-elsbetiae_contig12711.2178.1|Name=mRNA_L-elsbetiae_contig12711.2178.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1761bp|location=Sequence derived from alignment at L-elsbetiae_contig12711:2721..4481+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig12711:2721..4481+ >mRNA_L-elsbetiae_contig12711.2178.1 ID=mRNA_L-elsbetiae_contig12711.2178.1|Name=mRNA_L-elsbetiae_contig12711.2178.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=936bp|location=Sequence derived from alignment at L-elsbetiae_contig12711:2721..4481+ (Laminarionema elsbetiae ELsaHSoW15)back to top |