prot_L-elsbetiae_contig12711.2178.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig12711.2178.1
Unique Nameprot_L-elsbetiae_contig12711.2178.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length156
Homology
BLAST of mRNA_L-elsbetiae_contig12711.2178.1 vs. uniprot
Match: D7FLR7_ECTSI (Histone hairpin binding protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FLR7_ECTSI)

HSP 1 Score: 139 bits (351), Expect = 2.240e-35
Identity = 66/102 (64.71%), Postives = 79/102 (77.45%), Query Frame = 0
Query:   53 EVDGLELPRHLLGQKPDFEAEGGGRGEELKFADNVEVDPHRLAVRQRQIDFGRNTLGYETYLEKVPRKKRRRADPTTPDKTEKMSKRRWDGKVRCGLNPLSQ 154
            E +  ELPRHLLG+KPDFEAEGGG+GE LKFA + E DPHR+A RQ+QIDFG+NT GY+ YL  VPR KR R DP TP+K +KMSKRRWDG++R     L +
Sbjct:  883 EEEVKELPRHLLGKKPDFEAEGGGQGEALKFASDREEDPHRIAQRQKQIDFGKNTSGYDRYLAAVPRNKRSRGDPKTPNKEKKMSKRRWDGQIRSWRRQLHE 984          
BLAST of mRNA_L-elsbetiae_contig12711.2178.1 vs. uniprot
Match: A0A7S2JLD2_9EUKA (Hypothetical protein n=1 Tax=Cyanoptyche gloeocystis TaxID=77922 RepID=A0A7S2JLD2_9EUKA)

HSP 1 Score: 88.6 bits (218), Expect = 1.480e-17
Identity = 47/88 (53.41%), Postives = 57/88 (64.77%), Query Frame = 0
Query:   60 PRHLLG-QKPDFEAEGGGRGEELKFADNVEVDPHRLAVRQRQIDFGRNTLGYETYLEKVPRKKRRRADPTTPDKTEKMSKRRWDGKVR 146
            PR +    +P+   + G R   L   +  EVD HRLA RQ+QI +G+NTLGYE YLE VPR KR++ DP TPDK  K SKR WDG VR
Sbjct:  382 PRRVFSTSRPETSIKDGSRSNNLDREER-EVDVHRLAQRQKQIAYGKNTLGYEKYLELVPRNKRKKGDPQTPDKHRKYSKRAWDGLVR 468          
BLAST of mRNA_L-elsbetiae_contig12711.2178.1 vs. uniprot
Match: H3GRU1_PHYRM (SLBP_RNA_bind domain-containing protein n=1 Tax=Phytophthora ramorum TaxID=164328 RepID=H3GRU1_PHYRM)

HSP 1 Score: 82.8 bits (203), Expect = 1.390e-16
Identity = 42/74 (56.76%), Postives = 55/74 (74.32%), Query Frame = 0
Query:   75 GGRGEELK-FADNVEVDPHRLAVRQRQIDFGRNTLGYETYLEKVPRKKRRRA-DPTTPDKTEKMSKRRWDGKVR 146
            G +G E++  AD  E DPHRLA RQ+QID+G+NT+GY+ Y  +VPR +RR    PTTPDKT+KM K+ +DG VR
Sbjct:   48 GAKGAEVRTLADEKEADPHRLAQRQKQIDYGKNTIGYDLYCAQVPRHQRRPGRHPTTPDKTKKMGKKVFDGIVR 121          
BLAST of mRNA_L-elsbetiae_contig12711.2178.1 vs. uniprot
Match: A0A388KFE1_CHABU (SLBP_RNA_bind domain-containing protein n=1 Tax=Chara braunii TaxID=69332 RepID=A0A388KFE1_CHABU)

HSP 1 Score: 82.8 bits (203), Expect = 1.830e-16
Identity = 38/59 (64.41%), Postives = 45/59 (76.27%), Query Frame = 0
Query:   88 EVDPHRLAVRQRQIDFGRNTLGYETYLEKVPRKKRRRADPTTPDKTEKMSKRRWDGKVR 146
            E D HR++ RQ+QIDFG+NTLGY  Y E VPRKKR+R DP TPD  +  SKR WDG+VR
Sbjct:   54 ETDKHRISQRQKQIDFGKNTLGYGRYFELVPRKKRKRGDPQTPDPYQVCSKRSWDGQVR 112          
BLAST of mRNA_L-elsbetiae_contig12711.2178.1 vs. uniprot
Match: A0A8K1CNZ8_PYTOL (Uncharacterized protein n=1 Tax=Pythium oligandrum TaxID=41045 RepID=A0A8K1CNZ8_PYTOL)

HSP 1 Score: 82.0 bits (201), Expect = 2.080e-16
Identity = 39/66 (59.09%), Postives = 51/66 (77.27%), Query Frame = 0
Query:   88 EVDPHRLAVRQRQIDFGRNTLGYETYLEKVPRKKRRRAD-PTTPDKTEKMSKRRWDGKVRCGLNPL 152
            E DPHRLA RQ+QID+G+NTLGY+ Y  +VPR++RRR + P TPDKT K+SK+R+DG +R     L
Sbjct:   48 ETDPHRLAQRQKQIDYGKNTLGYDRYCAQVPRRERRRGEHPMTPDKTLKVSKKRFDGMIRVWRQAL 113          
BLAST of mRNA_L-elsbetiae_contig12711.2178.1 vs. uniprot
Match: A0A1V9YXU1_9STRA (SLBP_RNA_bind domain-containing protein n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1V9YXU1_9STRA)

HSP 1 Score: 82.0 bits (201), Expect = 2.210e-16
Identity = 37/68 (54.41%), Postives = 51/68 (75.00%), Query Frame = 0
Query:   88 EVDPHRLAVRQRQIDFGRNTLGYETYLEKVPRKKRR-RADPTTPDKTEKMSKRRWDGKVRCGLNPLSQ 154
            E+DPH+L+ RQ+QIDFG+NT+GY+ Y++ VP+ KR  +  P TPDKT+ MSKR WDG++R     L Q
Sbjct:   72 EMDPHKLSQRQKQIDFGKNTIGYDRYIQLVPKNKRNTKIHPMTPDKTKMMSKRAWDGRIRVWRAALHQ 139          
BLAST of mRNA_L-elsbetiae_contig12711.2178.1 vs. uniprot
Match: A0A2K3DQ09_CHLRE (SLBP_RNA_bind domain-containing protein n=1 Tax=Chlamydomonas reinhardtii TaxID=3055 RepID=A0A2K3DQ09_CHLRE)

HSP 1 Score: 85.1 bits (209), Expect = 2.480e-16
Identity = 38/59 (64.41%), Postives = 49/59 (83.05%), Query Frame = 0
Query:   87 VEVDPHRLAVRQRQIDFGRNTLGYETYLEKVPRKKRRRADPTTPDKTEKMSKRRWDGKV 145
            +++DPHRLA RQ+QIDFG+NT+GY+ YL+ VPR KRRR DP TPD    +SKRR+DG+V
Sbjct:   95 LDLDPHRLAQRQKQIDFGKNTVGYQRYLQLVPRNKRRRTDPATPDINANISKRRFDGQV 153          
BLAST of mRNA_L-elsbetiae_contig12711.2178.1 vs. uniprot
Match: A0A835WHY4_9CHLO (SLBP_RNA_bind domain-containing protein n=1 Tax=Chlamydomonas schloesseri TaxID=2026947 RepID=A0A835WHY4_9CHLO)

HSP 1 Score: 84.3 bits (207), Expect = 4.570e-16
Identity = 38/59 (64.41%), Postives = 49/59 (83.05%), Query Frame = 0
Query:   87 VEVDPHRLAVRQRQIDFGRNTLGYETYLEKVPRKKRRRADPTTPDKTEKMSKRRWDGKV 145
            +++DPHRLA RQ+QIDFG+NT+GY+ YL+ VPR KRRR DP TPD    +SKRR+DG+V
Sbjct:   77 LDLDPHRLAQRQKQIDFGKNTVGYQRYLQLVPRNKRRRTDPATPDIHANISKRRFDGQV 135          
BLAST of mRNA_L-elsbetiae_contig12711.2178.1 vs. uniprot
Match: T0QH70_SAPDV (SLBP_RNA_bind domain-containing protein n=1 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0QH70_SAPDV)

HSP 1 Score: 81.6 bits (200), Expect = 5.200e-16
Identity = 37/66 (56.06%), Postives = 51/66 (77.27%), Query Frame = 0
Query:   88 EVDPHRLAVRQRQIDFGRNTLGYETYLEKVPRKKRRRA-DPTTPDKTEKMSKRRWDGKVRCGLNPL 152
            E DPH+LA RQ+QIDFG+NT+GY+ Y + VPR +R++   P+TPDKT+ +SKR WDG+VR   + L
Sbjct:  105 ETDPHKLAQRQKQIDFGKNTIGYDRYTQLVPRSERKQGLHPSTPDKTQAISKRMWDGRVRVWRSAL 170          
BLAST of mRNA_L-elsbetiae_contig12711.2178.1 vs. uniprot
Match: A0A067CQY0_SAPPC (SLBP_RNA_bind domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CQY0_SAPPC)

HSP 1 Score: 81.6 bits (200), Expect = 6.780e-16
Identity = 37/66 (56.06%), Postives = 51/66 (77.27%), Query Frame = 0
Query:   88 EVDPHRLAVRQRQIDFGRNTLGYETYLEKVPRKKRRRA-DPTTPDKTEKMSKRRWDGKVRCGLNPL 152
            E DPH+LA RQ+QIDFG+NT+GY+ Y + VPR +R++   P+TPDKT+ +SKR WDG+VR   + L
Sbjct:  121 ETDPHKLAQRQKQIDFGKNTIGYDRYTQLVPRNERKQGVHPSTPDKTQAISKRMWDGRVRVWRSAL 186          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12711.2178.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FLR7_ECTSI2.240e-3564.71Histone hairpin binding protein n=1 Tax=Ectocarpus... [more]
A0A7S2JLD2_9EUKA1.480e-1753.41Hypothetical protein n=1 Tax=Cyanoptyche gloeocyst... [more]
H3GRU1_PHYRM1.390e-1656.76SLBP_RNA_bind domain-containing protein n=1 Tax=Ph... [more]
A0A388KFE1_CHABU1.830e-1664.41SLBP_RNA_bind domain-containing protein n=1 Tax=Ch... [more]
A0A8K1CNZ8_PYTOL2.080e-1659.09Uncharacterized protein n=1 Tax=Pythium oligandrum... [more]
A0A1V9YXU1_9STRA2.210e-1654.41SLBP_RNA_bind domain-containing protein n=1 Tax=Th... [more]
A0A2K3DQ09_CHLRE2.480e-1664.41SLBP_RNA_bind domain-containing protein n=1 Tax=Ch... [more]
A0A835WHY4_9CHLO4.570e-1664.41SLBP_RNA_bind domain-containing protein n=1 Tax=Ch... [more]
T0QH70_SAPDV5.200e-1656.06SLBP_RNA_bind domain-containing protein n=1 Tax=Sa... [more]
A0A067CQY0_SAPPC6.780e-1656.06SLBP_RNA_bind domain-containing protein n=1 Tax=Sa... [more]

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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR038294SLBP, RNA-binding domain superfamilyGENE3D1.10.8.1120coord: 83..152
e-value: 1.1E-22
score: 81.9
IPR029344Histone RNA hairpin-binding protein, RNA-binding domainPFAMPF15247SLBP_RNA_bindcoord: 90..146
e-value: 6.6E-21
score: 74.2
IPR026502Histone RNA stem-loop-binding protein SLBP1/SLBP2PANTHERPTHR17408HISTONE RNA HAIRPIN-BINDING PROTEINcoord: 25..146
NoneNo IPR availablePANTHERPTHR17408:SF0HISTONE RNA HAIRPIN-BINDING PROTEINcoord: 25..146

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12711contigL-elsbetiae_contig12711:2721..4481 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12711.2178.1mRNA_L-elsbetiae_contig12711.2178.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig12711 2721..4481 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig12711.2178.1 ID=prot_L-elsbetiae_contig12711.2178.1|Name=mRNA_L-elsbetiae_contig12711.2178.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=156bp
RGPVAEARGGPAARSPLSRRGQQQQQPQAKRDGEAGAGGGANKRKAAAAE
EEEVDGLELPRHLLGQKPDFEAEGGGRGEELKFADNVEVDPHRLAVRQRQ
IDFGRNTLGYETYLEKVPRKKRRRADPTTPDKTEKMSKRRWDGKVRCGLN
PLSQG*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR038294SLBP_RNA_bind_sf
IPR029344SLBP_RNA_bind
IPR026502SLBP1/SLBP2