mRNA_L-elsbetiae_contig1268.2160.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1268.2160.1
Unique NamemRNA_L-elsbetiae_contig1268.2160.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1268.2160.1 vs. uniprot
Match: A0A6H5JLH3_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JLH3_9PHAE)

HSP 1 Score: 235 bits (599), Expect = 4.130e-68
Identity = 214/542 (39.48%), Postives = 251/542 (46.31%), Query Frame = 1 
Query:  109 VVGSATFLVAVTGLLAPLPVPP-----HTPRRRAPP---------------------AR--------------------NAA-----NGKGYGSFDASAWKNIASSSPAXXXXXXXXXXXXXXAGTVGALPTGNTP-AIRNEAN-----EGG--GGEQVIDVDVGKLPTFVFFFGAGDGKPWREDVVGGGNARACEAKLQQVLASASS-----------------LEGASAGEGQRRVDVVRGE--------GLATGEHR-DGVADTFSSGDRGGGNGGISSASNKTNN--NFLEICSKDDLLRVLAKQRKGQGPVVVMYHAPWCRKCAYLTPVFRRLAAARMLATGGGQAAARGGGVGGITSET-STDGPIFCRVDVSHTSWGGR-----VESGPTDAATEGP----------------------------LAAGGYRGVSGIGGG--AATSMSPDGT--PGAAAVGEAEKRFLHTGSPAMENCDVCMKSGFVPCGECEGKGAVVRSSPXXXXXXXXXXXXCVGYXXXXXXXXGGKCYMCD 1359
            V+GSATFLVAV+GLL P  VPP       P   APP                     AR                    NAA     +G G+G FDA AWKN+ SS P                  V A PT   P A++  AN     EGG  G E+ I V V KLPTFVFF    +G+  RE+V GG +AR C  KL++ LAS SS                 L  + AGEG     V R          G A G +R D   DT      G GNGG+ +  + T +  N +EI  K +LLRVL  + +GQGPVVVMYHAPWCRKCAYL PVFRRLAAA+  + G  +A       GG +S+  S+ GP+FCRVDVS  SWG R         P   A+EG                             +AAG      G+G G  AA  M+ D T  P  A    AE   LH GS A+ENCDVC  SGFVPCGEC G GAV R+SP            CVGY        GGKCYMCD
Sbjct:    7 VLGSATFLVAVSGLLDPPLVPPIGLSPFHPSAPAPPPSLFRSDKRRGSFCGGPLASTARMRKRCLQAGNESPGTGDEGVNAAAAGRRHGSGHGMFDADAWKNMPSSPPL-----------------VTAPPTSLNPSAVQLSANGALDDEGGVEGREEPISVYVDKLPTFVFFV-RDNGRHRREEVTGGRDARTCATKLRERLASISSPGSTWTNSGSLDDNDSPLRPSGAGEGGVGGGVARTRSDGAAVVGGAAEGPNRLDNETDTG----MGRGNGGMGAIVDGTGSPTNIVEISDKRELLRVLGARGEGQGPVVVMYHAPWCRKCAYLAPVFRRLAAAQATSVGVTKA-------GGSSSDRGSSGGPLFCRVDVSDPSWGRRRAVRGSSVAPATVASEGTAAXXXXXXXXXXXXXXXXXVRRARNKASIAAGASSQARGLGVGDRAAGLMAADATATPANAEGKIAETELLHAGSQAVENCDVCGGSGFVPCGECGGLGAVSRASPDGKHTMAVTCSSCVGYKRLRCPSCGGKCYMCD 519
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BLAST of mRNA_L-elsbetiae_contig1268.2160.1 vs. uniprot
Match: D7FW10_ECTSI (Serine/threonine protein kinase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW10_ECTSI)

HSP 1 Score: 190 bits (483), Expect = 2.620e-51
Identity = 211/527 (40.04%), Postives = 251/527 (47.63%), Query Frame = 1 
Query:  109 VVGSATFLVAVTGLLAPLPVPPH--TPRRRAPP------------------------AR--------------------NAA-----NGKGYGSFDASAWKNIASSSPAXXXXXXXXXXXXXXAGTVGALPTGNTPAI----RNEANEGGGGEQ---VIDVDVGKLPTFVFFFGAGDGKPWREDVVGGGNARACEAKLQQVLASASSLEGA--SAGEGQRRVDVVRGEGLATGEHRDGVADTFSSG-----------DR---------GGGNGGISSASNKTNN--NFLEICSKDDLLRVLAKQRKGQGPVVVMYHAPWCRKCAYLTPVFRRLAAARMLATGGGQAAARGGGVGGITSETSTDGPIFCRVDVSHTSWGGR-----VESGPTDAATEGP-------------------LAAGGYRGVSGIGGG--AATSMSPDGTPGAA-AVGE-AEKRFLHTGSPAMENCDVCMKSGFVPCGECEGKGAVVRSSPXXXXXXXXXXXXCVGYXXXXXXXXGGKCYMCD 1359
            V+GSATFLVAV+GLL P  VPP+  +P R + P                        AR                    NAA     +G G+  FDA AWKN+ SS P                  V A PT   P+      N+A +G G E+     +VDV KLPTFVFF     G+  RE+V+GG +AR C  +L + LAS SS      ++G        +R  G   G    G A T S G           DR         G G+G + +  + T N  N +EI  K DLLRVL    +GQGPVVVMYHAPWCRKCAYLTPVFRRLAAA+  + G      R GG G      S++GP+FCRVDVSH SWG R         P+  A+ G                    +AAG      G+G G  AA  ++ D T   A A G  AE   LH GS A+ENCDVC  SGFVP               XXXXXXXXXXXX    XXXXXXXXGGKCYMCD
Sbjct:    7 VLGSATFLVAVSGLLDPPLVPPNGLSPLRPSAPNPPPSLFQSDTHRGYYCAGPLASTARRRKRCLQAGNESPGTGGEGVNAAAGGRRHGSGHSMFDADAWKNMPSSPPP-----------------VTAPPTSLNPSAVQLSSNDALDGEGEEEREEPTNVDVEKLPTFVFFV-RDKGRHRREEVIGGRDARTCATELSERLASISSPGSTWTNSGSLDDNDSPLRPSGAGEGGVGGGAARTSSDGAAVVGGAAEGPDRLDYETDTGMGRGSGDMVANVDGTGNPTNIVEISDKRDLLRVLGALGEGQGPVVVMYHAPWCRKCAYLTPVFRRLAAAQAPSAG-----VREGG-GSSIERGSSEGPLFCRVDVSHPSWGRRRAVRGASVAPSTVASAGTAAXXXXXXXXXXXXPNTAAIAAGASSQAQGLGFGDRAAGWVAADATTATAEAEGTIAETELLHAGSQAVENCDVCGGSGFVPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGGKCYMCD 509
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1268.2160.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5JLH3_9PHAE4.130e-6839.48Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FW10_ECTSI2.620e-5140.04Serine/threonine protein kinase n=1 Tax=Ectocarpus... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1268contigL-elsbetiae_contig1268:9959..11874 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal anchor
Ec32 ortholog descriptionThioredoxin-like fold and cysteine-rich domain protein
Ec32 ortholog descriptionThioredoxin-like fold
Ec32 orthologEc-01_002920.1
Exons2
Model size1362
Cds size1362
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815457.5813632-CDS-L-elsbetiae_contig1268:9958..112661622815457.5813632-CDS-L-elsbetiae_contig1268:9958..11266Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1268 9959..11266 -
1691682907.3213208-CDS-L-elsbetiae_contig1268:9958..112661691682907.3213208-CDS-L-elsbetiae_contig1268:9958..11266Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1268 9959..11266 -
1622815457.595365-CDS-L-elsbetiae_contig1268:11820..118741622815457.595365-CDS-L-elsbetiae_contig1268:11820..11874Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1268 11821..11874 -
1691682907.3326836-CDS-L-elsbetiae_contig1268:11820..118741691682907.3326836-CDS-L-elsbetiae_contig1268:11820..11874Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1268 11821..11874 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1268.2160.1prot_L-elsbetiae_contig1268.2160.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1268 9959..11874 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1268.2160.1

>prot_L-elsbetiae_contig1268.2160.1 ID=prot_L-elsbetiae_contig1268.2160.1|Name=mRNA_L-elsbetiae_contig1268.2160.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=454bp
RRRRPTRGLWSGRKDKKTRDSSDSPSLFNHVMAGAIVVGSATFLVAVTGL
LAPLPVPPHTPRRRAPPARNAANGKGYGSFDASAWKNIASSSPASSSSSS
SSSSSSSSAGTVGALPTGNTPAIRNEANEGGGGEQVIDVDVGKLPTFVFF
FGAGDGKPWREDVVGGGNARACEAKLQQVLASASSLEGASAGEGQRRVDV
VRGEGLATGEHRDGVADTFSSGDRGGGNGGISSASNKTNNNFLEICSKDD
LLRVLAKQRKGQGPVVVMYHAPWCRKCAYLTPVFRRLAAARMLATGGGQA
AARGGGVGGITSETSTDGPIFCRVDVSHTSWGGRVESGPTDAATEGPLAA
GGYRGVSGIGGGAATSMSPDGTPGAAAVGEAEKRFLHTGSPAMENCDVCM
KSGFVPCGECEGKGAVVRSSPDGKHTVAVTCPACVGYKRLRCPSCGGKCY
MCD*
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mRNA from alignment at L-elsbetiae_contig1268:9959..11874-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1268.2160.1 ID=mRNA_L-elsbetiae_contig1268.2160.1|Name=mRNA_L-elsbetiae_contig1268.2160.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1916bp|location=Sequence derived from alignment at L-elsbetiae_contig1268:9959..11874- (Laminarionema elsbetiae ELsaHSoW15)
CGCCGACGAAGGCCGACTCGGGGCTTATGGTCTGGACGAAAGGACAAGAA
GACGGTGAGAGCACCAGTCGTAGATCCCACAAGTGTGAGAAGAACGAAGT
GTCCACGGCAGTACACGTAGTAGCTGGAGGACACATGTGTGTGTGTGTGC
TGGCCAAATAGCAGGGAGTCTAGACTATATGAAGTTCATGATCGCAGGAG
GGTTAAGACCTTCCCGTAGAGCGAAAGCTGCTTGATCAATAGGTGCAGAG
GTTCACCCTAGACTGCACAGGTATGTTGAGTTATTTCACCTGCACACTGC
ACACCACATCCACCGGGCGGAGCGTTTGTAGACTAGACTATGCATGTAGC
AGCAGGCGCGGTTCAATGGTTTGCTTCCTAACCAGCCAGGGTGTGGCGTT
GTACAATTTTTGCTTGCAATAAGTGGTTGTGTGGCCACGCAGGCTTCCGG
CAGCAGCAGTTAGTTCCCTGAACACCATTTTTCCGACCGCCCCGTCTCCC
GTCTGCTATATACTGCTGTTTGACTAGACTAGACTTTAGACTAGACTTAC
TTACAGCGGCCGGCTCTTGCTCACTTGTACTTCTTCTGTGGTACCTGCCT
CTGCGCAGCGCGACTCGTCAGATAGTCCATCGCTGTTCAACCACGTCATG
GCGGGAGCTATTGTGGTAGGTTCGGCCACCTTCCTCGTCGCTGTCACCGG
CCTGCTTGCCCCGCTCCCGGTGCCGCCTCACACGCCGCGCCGTCGCGCGC
CTCCCGCGAGAAACGCCGCGAATGGCAAGGGGTATGGCAGTTTCGACGCC
AGTGCGTGGAAAAATATCGCTTCTTCCTCTCCTGCTTCTTCTTCTTCTTC
TTCTTCTTCTTCTTCTTCTTCTTCTTCGGCAGGAACGGTGGGCGCTTTGC
CTACAGGCAATACTCCCGCTATTCGAAACGAAGCAAATGAAGGGGGAGGG
GGAGAACAGGTCATCGATGTGGACGTGGGCAAACTGCCGACCTTCGTGTT
CTTTTTCGGGGCAGGCGACGGGAAGCCTTGGCGGGAAGACGTTGTGGGCG
GGGGAAACGCCCGGGCCTGCGAGGCGAAGCTGCAGCAAGTTTTGGCCTCT
GCATCTTCGCTGGAAGGCGCTAGCGCTGGAGAAGGACAGAGAAGAGTCGA
TGTCGTTCGCGGGGAGGGGCTAGCGACGGGTGAGCATCGAGACGGCGTGG
CCGACACCTTCTCTAGCGGTGACAGAGGTGGTGGCAACGGTGGCATCAGC
AGCGCCTCCAATAAAACCAATAACAATTTCTTAGAAATCTGCTCCAAGGA
CGACTTGCTTCGTGTTCTTGCCAAGCAGAGAAAAGGTCAGGGTCCCGTGG
TCGTAATGTATCACGCCCCTTGGTGTCGCAAGTGCGCCTACCTCACCCCT
GTGTTCCGTCGGCTAGCCGCTGCGCGTATGCTGGCGACGGGAGGGGGGCA
GGCTGCAGCTAGGGGCGGTGGCGTCGGCGGTATTACGAGCGAAACGTCAA
CAGACGGACCGATATTCTGTCGAGTAGACGTCTCCCACACATCGTGGGGG
GGGCGTGTTGAAAGCGGTCCAACCGACGCCGCCACCGAGGGACCATTAGC
AGCAGGAGGATACCGGGGGGTGAGTGGAATTGGGGGTGGTGCCGCCACAT
CGATGTCACCTGATGGCACTCCCGGTGCTGCTGCGGTTGGTGAAGCGGAG
AAACGGTTCTTGCACACCGGGTCGCCCGCCATGGAGAACTGCGATGTGTG
CATGAAGTCCGGGTTCGTGCCATGCGGGGAATGCGAAGGAAAGGGTGCTG
TGGTCCGATCGAGCCCCGATGGGAAGCACACCGTGGCGGTCACGTGTCCT
GCCTGCGTCGGGTACAAGCGCCTGCGATGTCCGTCGTGCGGCGGGAAATG
TTATATGTGCGATTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1268:9959..11874-

>mRNA_L-elsbetiae_contig1268.2160.1 ID=mRNA_L-elsbetiae_contig1268.2160.1|Name=mRNA_L-elsbetiae_contig1268.2160.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2724bp|location=Sequence derived from alignment at L-elsbetiae_contig1268:9959..11874- (Laminarionema elsbetiae ELsaHSoW15)
CGCCGACGAAGGCCGACTCGGGGCTTATGGTCTGGACGAAAGGACAAGAA
GACGCGCCGACGAAGGCCGACTCGGGGCTTATGGTCTGGACGAAAGGACA
AGAAGACGCGCGACTCGTCAGATAGTCCATCGCTGTTCAACCACGTCATG
GCGGGAGCTATTGTGGTAGGTTCGGCCACCTTCCTCGTCGCTGTCACCGG
CCTGCTTGCCCCGCTCCCGGTGCCGCCTCACACGCCGCGCCGTCGCGCGC
CTCCCGCGAGAAACGCCGCGAATGGCAAGGGGTATGGCAGTTTCGACGCC
AGTGCGTGGAAAAATATCGCTTCTTCCTCTCCTGCTTCTTCTTCTTCTTC
TTCTTCTTCTTCTTCTTCTTCTTCTTCGGCAGGAACGGTGGGCGCTTTGC
CTACAGGCAATACTCCCGCTATTCGAAACGAAGCAAATGAAGGGGGAGGG
GGAGAACAGGTCATCGATGTGGACGTGGGCAAACTGCCGACCTTCGTGTT
CTTTTTCGGGGCAGGCGACGGGAAGCCTTGGCGGGAAGACGTTGTGGGCG
GGGGAAACGCCCGGGCCTGCGAGGCGAAGCTGCAGCAAGTTTTGGCCTCT
GCATCTTCGCTGGAAGGCGCTAGCGCTGGAGAAGGACAGAGAAGAGTCGA
TGTCGTTCGCGGGGAGGGGCTAGCGACGGGTGAGCATCGAGACGGCGTGG
CCGACACCTTCTCTAGCGGTGACAGAGGTGGTGGCAACGGTGGCATCAGC
AGCGCCTCCAATAAAACCAATAACAATTTCTTAGAAATCTGCTCCAAGGA
CGACTTGCTTCGTGTTCTTGCCAAGCAGAGAAAAGGTCAGGGTCCCGTGG
TCGTAATGTATCACGCCCCTTGGTGTCGCAAGTGCGCCTACCTCACCCCT
GTGTTCCGTCGGCTAGCCGCTGCGCGTATGCTGGCGACGGGAGGGGGGCA
GGCTGCAGCTAGGGGCGGTGGCGTCGGCGGTATTACGAGCGAAACGTCAA
CAGACGGACCGATATTCTGTCGAGTAGACGTCTCCCACACATCGTGGGGG
GGGCGTGTTGAAAGCGGTCCAACCGACGCCGCCACCGAGGGACCATTAGC
AGCAGGAGGATACCGGGGGGTGAGTGGAATTGGGGGTGGTGCCGCCACAT
CGATGTCACCTGATGGCACTCCCGGTGCTGCTGCGGTTGGTGAAGCGGAG
AAACGGTTCTTGCACACCGGGTCGCCCGCCATGGAGAACTGCGATGTGTG
CATGAAGTCCGGGTTCGTGCCATGCGGGGAATGCGAAGGAAAGGGTGCTG
TGGTCCGATCGAGCCCCGATGGGAAGCACACCGTGGCGGTCACGTGTCCT
GCCTGCGTCGGGTACAAGCGCCTGCGATGTCCGTCGTGCGGCGGGAAATG
TTATATGTGCGATTGACGCGACTCGTCAGATAGTCCATCGCTGTTCAACC
ACGTCATGGCGGGAGCTATTGTGGTAGGTTCGGCCACCTTCCTCGTCGCT
GTCACCGGCCTGCTTGCCCCGCTCCCGGTGCCGCCTCACACGCCGCGCCG
TCGCGCGCCTCCCGCGAGAAACGCCGCGAATGGCAAGGGGTATGGCAGTT
TCGACGCCAGTGCGTGGAAAAATATCGCTTCTTCCTCTCCTGCTTCTTCT
TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCGGCAGGAACGGTGGG
CGCTTTGCCTACAGGCAATACTCCCGCTATTCGAAACGAAGCAAATGAAG
GGGGAGGGGGAGAACAGGTCATCGATGTGGACGTGGGCAAACTGCCGACC
TTCGTGTTCTTTTTCGGGGCAGGCGACGGGAAGCCTTGGCGGGAAGACGT
TGTGGGCGGGGGAAACGCCCGGGCCTGCGAGGCGAAGCTGCAGCAAGTTT
TGGCCTCTGCATCTTCGCTGGAAGGCGCTAGCGCTGGAGAAGGACAGAGA
AGAGTCGATGTCGTTCGCGGGGAGGGGCTAGCGACGGGTGAGCATCGAGA
CGGCGTGGCCGACACCTTCTCTAGCGGTGACAGAGGTGGTGGCAACGGTG
GCATCAGCAGCGCCTCCAATAAAACCAATAACAATTTCTTAGAAATCTGC
TCCAAGGACGACTTGCTTCGTGTTCTTGCCAAGCAGAGAAAAGGTCAGGG
TCCCGTGGTCGTAATGTATCACGCCCCTTGGTGTCGCAAGTGCGCCTACC
TCACCCCTGTGTTCCGTCGGCTAGCCGCTGCGCGTATGCTGGCGACGGGA
GGGGGGCAGGCTGCAGCTAGGGGCGGTGGCGTCGGCGGTATTACGAGCGA
AACGTCAACAGACGGACCGATATTCTGTCGAGTAGACGTCTCCCACACAT
CGTGGGGGGGGCGTGTTGAAAGCGGTCCAACCGACGCCGCCACCGAGGGA
CCATTAGCAGCAGGAGGATACCGGGGGGTGAGTGGAATTGGGGGTGGTGC
CGCCACATCGATGTCACCTGATGGCACTCCCGGTGCTGCTGCGGTTGGTG
AAGCGGAGAAACGGTTCTTGCACACCGGGTCGCCCGCCATGGAGAACTGC
GATGTGTGCATGAAGTCCGGGTTCGTGCCATGCGGGGAATGCGAAGGAAA
GGGTGCTGTGGTCCGATCGAGCCCCGATGGGAAGCACACCGTGGCGGTCA
CGTGTCCTGCCTGCGTCGGGTACAAGCGCCTGCGATGTCCGTCGTGCGGC
GGGAAATGTTATATGTGCGATTGA
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