mRNA_L-elsbetiae_contig1268.2159.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1268.2159.1 vs. uniprot
Match: D7FW09_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FW09_ECTSI) HSP 1 Score: 1061 bits (2745), Expect = 0.000e+0 Identity = 654/1161 (56.33%), Postives = 772/1161 (66.49%), Query Frame = 1 Query: 13 KLPAHLEYYLGLYDDAERSISRALELGHEDDGSLQVRLARIHVRRHESDSANAQRHLRAALAAFSEALKFVVVASKAVHYLEVTSVYLKLNETQRAANALSTILVRWPALMVDPVAKEQ-AVPILKGDRAEVDLPVASRILGGESLFLQASRILMGLCFEALNQDKMAAEAYRQAWNALLEQRAARQTSRGNGGAFGD-GTGGRGKSSGKAKEETAIGRILLQAKLALTTGXXXXXXXXXXXXXXXXXXXXXXRNANPLSKGKKKPPIALLLPDSRDFGPGK---PYLTYPTARTRT--RASGRG--GDAAAPPSKKQAAAEEARILALGFGIWSKKPYTWFKLGQAVLEGGCYALALALLAKAAVLLPPGLQQQEKGRFSDAHAAAEEARDVEPFGKAVRLLCPRLMALHSEDARSQYTLESLSAVRVQRAWRGHRMVRVLRDVATKQVAALRIQRFMREWRRRNAQLAVRLVVASALELSRLGAPYAKGMGIATRAAASVRLQALVASAVAVQRAARVLVARRRISRRRESIAALQAFYRGCRARWALSTALEEAQSLRLXXXXXXXXXXXXXXXXXXX---------------------------RATTSLPLSLQGKEGAMPGNE-LLVGHGG--SMQVGKITRRDVPMDADRPEGFGPPNLAAFLWESPEEAYGPGFGAEDAGTAAPTR-APH--SEGEDHRSCVTEEGGNASDDENDGAVFELSANAVISTTSIRENDGKISSRAIRAS---CSLDERGG-KPPCFTEPSCSPTAPAQQQQLPLRWTPVAVAPREALERALRCSTLIVNSPSFDSACARRLLSRIGRPFPRPSSPPRGRTAADRQRTTPSTPGGKPGDREGFSSALASEENMGEDQTSWRH---LQGAGLRHIMLVGESPIGDGGLSELSSAVRCRFLPRLTTLVIGGPGCRVGPRGVMALALALSSPGCSQLRNLSMSNCCLGGKSWLARKNRRQQHYRR-----RNTSRNQARAPTSKTVAATHAAWDCFFRHLQRLPSLSTLSLQRCGLEDRDVRSLSVSLQILPAGRMRCLRLNGNCVGLSGLRMVVTALTSRRMRLPALWLRGQRPALAESGAKGVVEEAFRNGLFAEVEFERPFEVMGGRSQLVLMERTTESEGLGSRVRKHPTSNIYV 3333 ++ AHL YYLGLYD+AE SI RALELGHE+DGS+Q+RLAR+HVRR ++DSANA+RHLR+ALA++SEA+KFV VAS+AVHYLEVTSVYLKLNETQRAANALST+LVRWPAL+VD +VP+++GDRAEVDLPVAS +LGGES+FLQ MG CFE L QDKMAAEAYRQAWN LLEQR A G G F G GK G + IG IL QA+LAL + + S +++PP + PD + G G+ P TA + R GRG GD++ +KK+ + A+ ALGF +W K PYTWF G+ VLEGGCYAL LA LAKA LLP GL QQEKGRF DAH+AAEEARD++PFGKAVRLLCPRLMALHS DAR QYT ES SA+RVQRAWRGHR++RVL D+ +KQ AALRIQRFMREWR+ LA+RLV SALELS+LGA Y K MG+A +AAA+ RLQAL ASA AVQRAARVL+A RR+SRR+E+IAALQAF RGCR RWALS A EE SLRL R ++ PL + +G P E G+ ++Q+G I RR+ PMDA +GF PPNLAAFLWES EEAYG A+D PT PH +E E RS V ++ D DGAVFE SA AV S+ RE+ ++ S CS D+ GG +PP F E SP +P Q P RW P VAP A RAL CSTLIVNSPSFDS+ ARRL SR+G+P P +SPPR + Q+ G G R G + + E + +H L GL+H++LVGESPIGDGGLSELSSAVRC +LPRLTTLVIGGPGC+VGPRGV ALA ALS+ GCSQL++LSMSNCCLG R++Q + + N A K A HAAWDCFFRHLQRLPSL+TLS+Q GLE+RDVRSLS++LQILPA R+RCLRLNGNCVG SGLRM++TALTSRR RLPALWLR QRPAL ESGA+ + E AFR+GLFAEVEFERPFEVMGGRS L L+E TTE+E LG R KHPTS+IY+ Sbjct: 22 QITAHLAYYLGLYDEAEASIERALELGHEEDGSMQLRLARMHVRREKADSANAERHLRSALASYSEAMKFVRVASEAVHYLEVTSVYLKLNETQRAANALSTVLVRWPALLVDAENDGHGSVPVIEGDRAEVDLPVASNVLGGESIFLQ-----MGFCFETLRQDKMAAEAYRQAWNTLLEQRHASAAPAGYGAVFAKTAKSGGGKEVGVVGVDE-IGAILRQAQLALAASSRSTSAAGGRSRDSTPEQQL--QRSKGTSSTERRPPSSGQQPDQQGVGGGRGGVPSSLPSTADSSCLGRGGGRGDHGDSSCGVTKKETVVDAAKARALGFELWCKNPYTWFSFGEVVLEGGCYALTLAFLAKAVALLPSGLHQQEKGRFGDAHSAAEEARDLDPFGKAVRLLCPRLMALHSVDARCQYTRESQSALRVQRAWRGHRVIRVLHDLVSKQTAALRIQRFMREWRKHGFILALRLVATSALELSKLGAKYTKAMGLAAQAAAADRLQALTASAEAVQRAARVLIAHRRVSRRKEAIAALQAFCRGCRLRWALSAAFEE--SLRLEYVAHDLRQQRDCGDGGREEGAYTCEEGVEPGPDREGVGNTDREGKRGPSAAPLRPRHGDGCKPHKEEAFAGYNAPLNVQLGVIARRNFPMDAGCAKGFRPPNLAAFLWESREEAYG-SCCADDGTDDNPTLLVPHLGNETESPRSYVDSAARSSHGD--DGAVFEASATAVASSA-CREDPVRMGSEQNEVDLGDCSPDQHGGGRPPAFDELPASPVSPLPLLQPP-RWVPATVAPEGAFHRALACSTLIVNSPSFDSSSARRLFSRMGKPIPA-ASPPRD----EPQQEADDVKGMAAGVRRGKADLNPTHGEEKEKRRLKKHPGCLHANGLKHVLLVGESPIGDGGLSELSSAVRCGWLPRLTTLVIGGPGCKVGPRGVAALATALSTSGCSQLQHLSMSNCCLG---------RQKQXXXXXXXGCKTSLLNPASVSAEKAAAEAHAAWDCFFRHLQRLPSLATLSIQDAGLENRDVRSLSIALQILPADRLRCLRLNGNCVGESGLRMLLTALTSRRRRLPALWLRRQRPALVESGARDIFEGAFRDGLFAEVEFERPFEVMGGRSHLALIECTTETEDLGRRALKHPTSHIYI 1153
BLAST of mRNA_L-elsbetiae_contig1268.2159.1 vs. uniprot
Match: A0A6H5JP04_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JP04_9PHAE) HSP 1 Score: 961 bits (2485), Expect = 0.000e+0 Identity = 631/1254 (50.32%), Postives = 748/1254 (59.65%), Query Frame = 1 Query: 13 KLPAHLEYYLGLYDDAERSISRALELGHEDDGSLQVRLARIHVRRHESDSANAQRHLRAALAAFSEALKFVVVASKAVHYLEVTSVYLKLNETQRAANALSTILVRWPALMVDPVAKEQ-AVPILKGDRAEVDLPVASRILGGESLFLQAS--------------------RI-------LMGLCFEALNQDKMAAEAYRQAWNALLEQRAAR------------------QTSRGNGGAFGD-GTGGRGKSSGKAKEETAIGRILLQAKLALTTGXXXXXXXXXXXXXXXXXXXXXXRNANPLSKGKKKPPIALLLPDSRDFGPGKPYLTYPTARTRTRASGRGGDAAAPPSKKQAAAEEARILALGFGIWSKKPYTWFKLGQAVLEGGCYALALALLAKAAVLLPPGLQQQEKGRFSDAHAAAEEARDVEPFGKAVRLLCPRLMALHSEDARSQ--YTLESLSAVRVQRAWRGHRMVRVLRDVATKQVAALRIQRFMREWRRRNAQLAVRLVVASALELS----------------------------------RLGAPYAKGMGIATRAAASVRLQALVASAVAVQRAARVLVARRRISRRRESIAALQAFYRGCRARWALSTALEE-------AQSLRLXXXXXXXXXXXXXXXXXXX------------------RATTSLPLSLQGKEGAMPGNELLVGHGG--SMQVGKITRRDVPMDADRPEGFGPPNLAAFLWESPEEAYGPGFGAEDAGTAAPTRAPH--SEGEDHRSCVTEEGGNASDDENDGAVFELSANAVISTTSIRENDGKISSRAIRAS---CSLDERGG-KPPCFTEPSCSPTAPAQQQQLPLRWTPVAVAPREALERALRCSTLIVNSPSFDSACARRLLSRIGRPFPRPSSPPRGRTAADRQRTTPSTPGGKPGDREGFSSALASEENMGEDQTSWRHLQGA----GLRHIMLVGESPIGDGGLSELSSAVRCRFLPRLTTLVIGGPGCRVGPRGVMALALALSSPGCSQLRNLSMSNCCLGGKSWLARKNRRQQHYRRRNTSRNQARAPTSKTVAATHAAWDCFFRHLQRLPSLSTLSLQRCGLEDRDVRSLSVSLQILPAGRMRCLRLNGNCVGLSGLRMVVTALTSRRMRLPALWLRGQRPALAESGAKGVVEEAFRNGLFAEV---------------------------EFERPFEVMGGRSQLVLMERTTESEGLGSRVRKHPTSNIYV 3333 ++ AHL YYLGLYD+AE SI RALELGHE+DGS+Q+RLAR+HVRR ++DSA+A+RHLR+ALA++SEA+KFV VAS+A+HYLEVTSVYLKLNETQRAANALST+L+RWPAL+VD +VP+++GDRAEVDLPVAS +LGGES+FLQA RI MGLCFE L QDKMAAEAYRQAWN LLEQR A +T G G F G GK G + + IG IL QA+LAL + + G+ SRD P + R+ G +K + + A+ ALGF +W K PYTWF G+ VLEGGCYAL LA LAKA LLP GL QQEKGRF DAH+AAEEARD++PFGKAVRLLCPRLMALHS DAR Q YT ES SA+RVQRAWRGHR++RVLRD+ +KQ+AA RIQRFMREWR+ LA+RL SALEL +LG Y K MG+ +AAA+ RLQAL ASA AVQRAAR L+A RR+SRR+E+IAALQAF+RGCR RWALS A EE A+ LR R ++ L + +G P + G+ ++Q+G ITRR++PMD +GF PPNLAAFLWES E+AYG + A APH E E RS V +S +D AVF SA AV S+ RE+ ++ S C D+ GG +PP F E SP + Q P RW P VAP A RAL CSTLIV+SPSFDSA ARRL SR+G+P P +SPPR + Q+ T G G R G + E + +H G GL HI+L+GESPIGDGGLSELSSAVRC +LPRLTTLVIGGPGC+VGPRGV ALA ALS+ GCSQL++LSMSNCCLG + R N A K A HAAWDCFFRHLQRLPSL+TLS+Q GLE+RDVRSLS++LQILPA R+RCLRLNGNCVG SGLRM++TAL SRR RLPALWLR QRPAL ESGA+ + E AFR+GLFAEV EFERPFEVMGGRS L L+ERTTE+E LG R KHPTS+IY+ Sbjct: 22 QITAHLAYYLGLYDEAEASIERALELGHEEDGSMQLRLARMHVRREKADSASAERHLRSALASYSEAMKFVRVASEAIHYLEVTSVYLKLNETQRAANALSTVLLRWPALLVDTENDGHGSVPVIEGDRAEVDLPVASYVLGGESIFLQARLTKLASRTRYSLFESEPHRYRIRRSVTPNAMGLCFETLRQDKMAAEAYRQAWNTLLEQRHASAAPAGQKPXXXXXTGDPSKTRTGYGAVFAKTAKSGGGKEVGVVRVDE-IGAILRQAQLALAASS----------------------RSTSAAGGR-----------SRDSTP---------EQQLQRSGG--------VTKNKTIVDAAKARALGFELWCKNPYTWFNYGEVVLEGGCYALTLAFLAKAVALLPSGLLQQEKGRFGDAHSAAEEARDLDPFGKAVRLLCPRLMALHSVDARCQARYTRESQSALRVQRAWRGHRVIRVLRDLVSKQIAAFRIQRFMREWRKHGFILALRLAAISALELRQVVRRRRSRSWVWHERRAAWVDGEATLARIHAPPKLGTNYTKAMGLTAQAAAADRLQALAASAEAVQRAARALIAHRRVSRRKEAIAALQAFFRGCRLRWALSAAFEESLRIESVARDLRQQRDCGDGGREEGAHTCEEGVKPGLDPEGVGNTDREGKRGLSATSLRPRHGDGCKPHKDTFGGYNAPPNVQLGVITRRNLPMDVSCAKGFRPPNLAAFLWESREDAYGSRCADDGADDNTALLAPHLGKEKESPRSYVDAAVARSSHG-HDHAVFVASATAVASSA-CREDLARMGSEQNEVDLGDCLSDQHGGGRPPAFDELPASPVSALPLLQPP-RWVPATVAPEGAFHRALACSTLIVSSPSFDSASARRLFSRMGKPMPA-ASPPRD----EPQQETDDVKGMAAGVRRGQVDLNLTHGE--EKERLIKHPTGCLYANGLEHILLLGESPIGDGGLSELSSAVRCGWLPRLTTLVIGGPGCKVGPRGVAALATALSTSGCSQLQHLSMSNCCLG----RPKGRRXXXXXXXXXXXSNLASVSAEKAAAEAHAAWDCFFRHLQRLPSLATLSIQDAGLENRDVRSLSIALQILPADRLRCLRLNGNCVGESGLRMLLTALRSRRRRLPALWLRRQRPALVESGAREIFERAFRDGLFAEVKRVPHPMNIERIEGKFRAANRNTWWLVEFERPFEVMGGRSHLALIERTTETEDLGRRALKHPTSHIYI 1210 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1268.2159.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 2
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1268.2159.1 >prot_L-elsbetiae_contig1268.2159.1 ID=prot_L-elsbetiae_contig1268.2159.1|Name=mRNA_L-elsbetiae_contig1268.2159.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=998bp MVDPVAKEQAVPILKGDRAEVDLPVASRILGGESLFLQASRILMGLCFEAback to top mRNA from alignment at L-elsbetiae_contig1268:517..8569+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1268.2159.1 ID=mRNA_L-elsbetiae_contig1268.2159.1|Name=mRNA_L-elsbetiae_contig1268.2159.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=8053bp|location=Sequence derived from alignment at L-elsbetiae_contig1268:517..8569+ (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1268:517..8569+ >mRNA_L-elsbetiae_contig1268.2159.1 ID=mRNA_L-elsbetiae_contig1268.2159.1|Name=mRNA_L-elsbetiae_contig1268.2159.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=5988bp|location=Sequence derived from alignment at L-elsbetiae_contig1268:517..8569+ (Laminarionema elsbetiae ELsaHSoW15)back to top |