mRNA_L-elsbetiae_contig12673.2153.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12673.2153.1
Unique NamemRNA_L-elsbetiae_contig12673.2153.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig12673.2153.1 vs. uniprot
Match: D7FMN7_ECTSI (Probable fusion protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FMN7_ECTSI)

HSP 1 Score: 262 bits (669), Expect = 4.490e-84
Identity = 132/154 (85.71%), Postives = 144/154 (93.51%), Query Frame = 1 
Query:    1 MCYICATNAGNTILRAHYAFMAHRNGMPISQLVSATSTDSSEDVAADDAVDAKQVAAMALAEASSGTPSTVSTVLVGLLMRQYSPAGVIELIATVSLAFMYHRWTAIYMPKEYEPEVLKFVQKHGKALGLDPEHPCTEEQAKWEDVAKDARAAS 462
            MCYICATNAGNTILRAHYAFMAHRNGMPI QL +AT+TDSSE VAADD +DAKQVAAMALAEA SGTPSTVS VLVGLLMRQYSPAGVIELIATVSLAFMYHRWTAIYMP+EYEPEVLKFVQ+HG ALG+DPE PCT++Q+ WE +AK+ARAA+
Sbjct:  267 MCYICATNAGNTILRAHYAFMAHRNGMPIRQLATATNTDSSEAVAADDTIDAKQVAAMALAEACSGTPSTVSPVLVGLLMRQYSPAGVIELIATVSLAFMYHRWTAIYMPREYEPEVLKFVQEHGAALGIDPERPCTKDQSTWEGIAKEARAAA 420
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BLAST of mRNA_L-elsbetiae_contig12673.2153.1 vs. uniprot
Match: D7G5G2_ECTSI (Probable fusion protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5G2_ECTSI)

HSP 1 Score: 155 bits (393), Expect = 1.280e-44
Identity = 83/151 (54.97%), Postives = 109/151 (72.19%), Query Frame = 1 
Query:   19 TNAGNTILRAHYAFMAHRNGMPISQLVSATS----TDSSEDVAADDAVDAKQVAAMALAEASSGTPSTVSTVLVGLLMRQYSPAGVIELIATVSLAFMYHRWTAIYMPKEYEPEVLKFVQKHGKALGLDPEHPCTEEQAKWEDVAKDARAA 459
            T+A NTILRAH+AFMAHRNG+ +S L +AT+    TD  ED+        K+ AA+++A A SGT   +   LV LLMRQY+PAGVIEL+ T+SL  M  RWT+IYMPK+YEPEVL FV+++G AL LDP  PCTEEQ+ W ++A + R++
Sbjct:  104 TSADNTILRAHFAFMAHRNGVSVSDLANATAEGGDTDGGEDL--------KKAAALSMARACSGTLGPMPRELVALLMRQYTPAGVIELVNTLSLVSMLQRWTSIYMPKQYEPEVLVFVEENGSALSLDPTKPCTEEQSGWRELAAEIRSS 246
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BLAST of mRNA_L-elsbetiae_contig12673.2153.1 vs. uniprot
Match: A0A6H5JWC3_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5JWC3_9PHAE)

HSP 1 Score: 140 bits (353), Expect = 1.850e-36
Identity = 75/153 (49.02%), Postives = 106/153 (69.28%), Query Frame = 1 
Query:    1 MCYICATNAGNTILRAHYAFMAHRNGMPISQLVSATSTDSSE--DVAADDAVDAKQVAAMALAEASSGTPSTVSTVLVGLLMRQYSPAGVIELIATVSLAFMYHRWTAIYMPKEYEPEVLKFVQKHGKALGLDPEHPCTEEQAKWEDVAKDAR 453
            M Y CATNA N +LRAH+AFMA R+G+ +S+L+  T   S+   D AA+DA       AMA A+A+S TP+ ++  L GL+ R +SP  VIEL+ TVS+ F  HRWT++Y+P+ YEPE+ +FV+++G ALG+ P  PCT +Q KWE++A   R
Sbjct:  351 MAYQCATNAENNVLRAHFAFMAMRSGVTLSRLIQVTDITSTGGGDSAAEDA-------AMAFAQAASWTPTRMTAALAGLISRLFSPPAVIELLITVSVEFAIHRWTSVYVPRRYEPEIDEFVKEYGPALGI-PHSPCTADQQKWEEIAAQKR 495
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BLAST of mRNA_L-elsbetiae_contig12673.2153.1 vs. uniprot
Match: A0A6H5JXG8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JXG8_9PHAE)

HSP 1 Score: 113 bits (282), Expect = 8.650e-27
Identity = 64/116 (55.17%), Postives = 81/116 (69.83%), Query Frame = 1 
Query:    1 MCYICATNAGNTILRAHYAFMAHRNGMPISQLVSATS----TDSSEDVAADDAVDAKQVAAMALAEASSGTPSTVSTVLVGLLMRQYSPAGVIELIATVSLAFMYHRWTAIYMPKE 336
            M Y+ AT+A NTILRAH+AFMAHRNG+ +S L SAT+    TD  ED+        K+ AA+++A A  GTP  +   LV LLMRQY+PAGVIEL+ T+SL  M  RWT+IYMPK+
Sbjct:  292 MGYMLATSADNTILRAHFAFMAHRNGVSVSNLASATAEGGDTDGGEDL--------KKAAALSMARACGGTPGPLPRELVALLMRQYTPAGVIELVNTLSLVSMLQRWTSIYMPKQ 399
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12673.2153.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FMN7_ECTSI4.490e-8485.71Probable fusion protein n=2 Tax=Ectocarpus TaxID=2... [more]
D7G5G2_ECTSI1.280e-4454.97Probable fusion protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5JWC3_9PHAE1.850e-3649.02Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A6H5JXG8_9PHAE8.650e-2755.17Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12673contigL-elsbetiae_contig12673:138..3970 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score70.9
Seed ortholog evalue6.2e-10
Seed eggNOG ortholog391625.PPSIR1_29453
Hectar predicted targeting categoryother localisation
EggNOG free text desc.hydroperoxide reductase activity
EggNOG OGsCOG2128@1,COG2128@2
COG Functional cat.S
Best tax levelBacteria
Best eggNOG OGNA|NA|NA
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-22_000490.1
Exons3
Model size474
Cds size474
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12673.2153.1prot_L-elsbetiae_contig12673.2153.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12673 138..3970 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815456.9408762-CDS-L-elsbetiae_contig12673:137..2991622815456.9408762-CDS-L-elsbetiae_contig12673:137..299Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12673 138..299 +
1691682907.003219-CDS-L-elsbetiae_contig12673:137..2991691682907.003219-CDS-L-elsbetiae_contig12673:137..299Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12673 138..299 +
1622815456.952803-CDS-L-elsbetiae_contig12673:1470..16431622815456.952803-CDS-L-elsbetiae_contig12673:1470..1643Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12673 1471..1643 +
1691682907.0127878-CDS-L-elsbetiae_contig12673:1470..16431691682907.0127878-CDS-L-elsbetiae_contig12673:1470..1643Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12673 1471..1643 +
1622815456.965537-CDS-L-elsbetiae_contig12673:3831..39701622815456.965537-CDS-L-elsbetiae_contig12673:3831..3970Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12673 3832..3970 +
1691682907.0201654-CDS-L-elsbetiae_contig12673:3831..39701691682907.0201654-CDS-L-elsbetiae_contig12673:3831..3970Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12673 3832..3970 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12673.2153.1

>prot_L-elsbetiae_contig12673.2153.1 ID=prot_L-elsbetiae_contig12673.2153.1|Name=mRNA_L-elsbetiae_contig12673.2153.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=158bp
MCYICATNAGNTILRAHYAFMAHRNGMPISQLVSATSTDSSEDVAADDAV
DAKQVAAMALAEASSGTPSTVSTVLVGLLMRQYSPAGVIELIATVSLAFM
YHRWTAIYMPKEYEPEVLKFVQKHGKALGLDPEHPCTEEQAKWEDVAKDA
RAASANE*
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mRNA from alignment at L-elsbetiae_contig12673:138..3970+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12673.2153.1 ID=mRNA_L-elsbetiae_contig12673.2153.1|Name=mRNA_L-elsbetiae_contig12673.2153.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3833bp|location=Sequence derived from alignment at L-elsbetiae_contig12673:138..3970+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTGCTACATCTGTGCGACCAACGCGGGCAACACTATCTTGAGGGCCCA
CTACGCCTTCATGGCCCACCGCAATGGCATGCCCATCAGCCAGCTGGTGT
CCGCCACGAGCACCGACTCGAGCGAGGATGTGGCGGCGGACGATGCCGTC
GACGCTAAGCAGGTTTGTACCATGTACCGTGTACGACGCAAGGTAACACA
CCCTCTGGATCGATTTCCAAAGCTCGGTTACTCCGCACCGAGTGCTTCTA
ATACCAAACGACACGTTTTCGGACGGTTCTTGATGAGATCTCTCCAACGC
CGCCGCCCTTTTCGGGACCGGCACTCTTCTTCTCGCTGTGGAGTATATTA
CTCTTGAGCTTTGAAAATCGATCCCGGTCCAGGGGGTTTGCCATCTTGTG
CCGTACCCGGTAGGTCGCTGCTACAATACAGAAAAAAGGATTCGTGGCAC
GCATTTAGCTGAGAGAAAAGAGAGAAAAGGATTTGTGGGACCAATCAGCT
AACTGCGTACCACAAATCATGAATCTCAAAGGATTTGTGGCACGCAGTTA
GCTGATTGGTCAAGGATCTTGGGCCGTGCCACCTGTTTTGGAATTCCGCC
GCAGTGTTTTTTTACCAAAAAATAGGCACGACCGAAGAATGACCCTTTGA
CCAATCAGCTAACTGCGTACCACAAATCCTTTTTTCGGATTTGTGGCACA
CCAGCTAGCTGATTGGTCAAAGATCTTGGGCCGTGCCGCCTGTTTTGGAA
TTCCGCCGCAGTGTTTTTTCACCAAAAAACAGGCACGACCGAAGAAAGAC
CCGTGACCAATCAGCTATAACTAACTGCGTGCCACAAACCCTTTTCTCTG
GGCTGTTGTCAAGTGTTATCGTCGTTTATCGCTGTTGATGCCGCTGCTGT
TGTTGCTGCTTCGTTGCTGTTTTTGCTACTGTGTCTGGCTGCTGTTGTTG
TTCTTGCTGCTGTTGAGCCAGCTGTTGCTATAATACTTGGCTGTTTTCTT
TTTTGTTTTCTTTTTTGTCGAAACTGCTGTTGTATTCCGACGTCCAATGG
TTGGGATGGGAAGATCCAAAAAATGAAGTACTTCCGTTGTGCGAACACGT
TGCTGTGAATTATTGGCCGTGATGGATCCCTTCTCGCCTCGTGTAAGCCA
CTGTTAATAGTTTCGGCCCTTCCTCAACACCCCCTGCCTGCCTGCCTGCC
TGCCTGCTCTGCCTATTGGGCCGCCTATTGGGCCGCCTATTGGGCCGCCT
ATTGGGCCGCCTATCCACCCTATCCTGCTATTGGCGTCGTGTATCCATCC
TATCCATCCTTCCATCCTATCCATTATCCATAGGTTGCGGCGATGGCTCT
GGCCGAAGCGTCGAGCGGCACCCCGTCCACCGTGTCGACGGTGCTGGTGG
GGCTGCTCATGCGGCAGTACTCGCCGGCGGGCGTCATCGAGCTCATCGCC
ACGGTATCGCTGGCCTTCATGTACCACCGGTGGACTGCCATCTACATGCC
CAAGGAGTGAGTGGGTGTGATGTGCGCGCATGCATGGGTGTGTTGAGCAT
GTTTTCGGGTGGTGCTACATAGGTATTTTTATTATTATCATTTTATTTGC
AATTGCAGATGTATCCAGCCAAAATTTCTTACAAACTGATGATGCTATTC
TTACATGGTCGAACACACTGCGTAGATTGCACAAACCGCCAACACTACCA
AACAAAATATCCAGTGTTTTCTCTTCTCTCGCATGCTTTCATACATTTCA
CCAAAATAGTATAGATACAGATGCTCGAGGAGGGAGTGGGGTGTGCATGG
CTGGGGAGGTTGTTCTGGTCGCGCTAGGTACACGTACACGCCCCCGGGAG
TGGGCGGGGGGGGGGGGGGGGGGGGGGAGGAGAGGTGGAAAACCCACCTT
GGTTTTGTCCCCGGTTTCCCCCCCCCACCGGGCAGGAGAGAACACCCTCC
GACNNNNNNNNGGGGGGGGGGTGTGTGGGGGGTGGGGGGGGGTGGGTGGT
GAGCGTGGAGCCCCGGGGGGGCGGGGGGGGGGGGGGGGGGGGGGGGGGGG
GGGGGGGGTACGAAAGTGTTGAATCCTAACTCTGGTCTTGCCCCGTTTGC
CGCACGCCACTAGTTGTACCACCGCTTCAAGTACACAGCTATTGGTACCG
CTATTGGTCTTGCGTGAGAGATGTCCGGGGTTTATAAGCGTGAGGGTTGC
ATTTTTGTTTCTTGTTTTTCACATTTATTTCCGGTGCTCGACGGGTTCCT
TGCCCCGAGGGCATCTTGCCAGAGTACTGAACCGTGGTCACCCAGAAGGG
TTCCTTTCCCCCGAGCCCCCCACTCCCACCTTCTGCGGTGCTTGCCCCCC
TTAAGATTGTTGTCGCGAGAAGGGTTCGGCCGTCGCTCTTCCGTCGTCGA
CGGTGGGGTCAGGCATGGACGATTTTTGTTGGGTTCGCGCTGCACGTGGG
TTACTCGTGAGGGTGGAGAGGGTGCCCCGGTTGTCGGCCGGCCGCGTATG
TATGTAGATAAGATGTCCCCCAAGGGGGCACGTTATCCTACATGGGGGGG
GTAGGTAGGCAGGAGGCGTCGAGGTTCTACGTCATAAGCGCCTGTTTTTT
TTTGGCAAGGTGTGCTGAAGGGTAGAATAGATACATAAGCAGAAAGGGGT
GACGTGTTATGGGGGGCATGCATGGCATGCAGGGACGTGACAGCGCGTTT
TTTTTGTGTTGTTTCTGGTTCGCTTCAGCCTTGACGGGTTATGTCTGTCC
TCTGTGTTAAAAAAAAAACAGGAAACCAGAGCAAGAGCGCCCCCACGTTA
GAGACGGGGGATTCCTTGTGATGAGTCAACAGTCGACAAAATAAAAAAGA
AGAAAAAGCCCCCAGTGTTCATTCACCCCCTTCTGTGTGACCCCAGTTGG
TTCTAGTTGTACAGACAAATGCACTGCAAGGTGTAGTACCTCTGAGTACA
TCGTAAGGTGTAGTACACGTCTCCACTTGGGGGGACTGTCGCCAAAATAA
TTTGGAAGGACACACGCACACAGTAGTGATGCAGGATGGCCCGGCCGAGT
GAGAAACGCCTACCGAAGGTGACATAAGATAAGACACCCCCTGGACCGAT
TTTCAAAGCTCAAACACTCCACAGCAAGCAGAGCGTCAGTCCCGAAAAGG
GCGGCGTTGGAAGGATGTTGTCGAGAGCTGTCCGAAAATGTGGCGTTTGT
GGTTAAACTCGTATTCGTTGCGGAGTAACCGAGCTTTCAATTTCGGTCCA
GGGGGTGTCTTATCTTACGTCACCTACGGTAAAGTATCAAAGAAAGAAAA
AAGGTCAAAAATCTCCCCTGCACAAACTCTGCCAGGTCAACCAGCTAATA
TTCCGGGGAGAAGCCCACCGTGATGCCGCGGTCATCTTCTTGTAAGCTAG
GAATATATATCGCAGTGTCTGAAAAGGTCAAGGAGTGTTGTTGGTGTTAA
TAATGCGTGGACTTCCTTTCTATGTGTTACTATTATTATTATTTTTCGTT
TGCCCTTTGACAAATGCAGATAGATCCAATAAACACACACACTCATCAAA
ACCTCGTGACAGGGAGCCCATCGAGCACTGGAAATAAATGTGAAGAAGAA
AAAAAAAATCACGAAGTATATCCATTTGTATACATATCATACTTGTATGT
TTATTTGTTTGTTTGTTTGTGTGTTTGGATCATGAACAAATCAGGTACGA
GCCGGAGGTGCTCAAGTTTGTGCAGAAGCACGGAAAGGCCCTGGGCCTCG
ACCCGGAACACCCCTGCACCGAGGAGCAGGCCAAGTGGGAGGACGTCGCC
AAAGACGCTCGCGCCGCATCCGCGAACGAGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12673:138..3970+

>mRNA_L-elsbetiae_contig12673.2153.1 ID=mRNA_L-elsbetiae_contig12673.2153.1|Name=mRNA_L-elsbetiae_contig12673.2153.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=948bp|location=Sequence derived from alignment at L-elsbetiae_contig12673:138..3970+ (Laminarionema elsbetiae ELsaHSoW15)
ATGTGCTACATCTGTGCGACCAACGCGGGCAACACTATCTTGAGGGCCCA
CTACGCCTTCATGGCCCACCGCAATGGCATGCCCATCAGCCAGCTGGTGT
CCGCCACGAGCACCGACTCGAGCGAGGATGTGGCGGCGGACGATGCCGTC
GACGCTAAGCAGATGTGCTACATCTGTGCGACCAACGCGGGCAACACTAT
CTTGAGGGCCCACTACGCCTTCATGGCCCACCGCAATGGCATGCCCATCA
GCCAGCTGGTGTCCGCCACGAGCACCGACTCGAGCGAGGATGTGGCGGCG
GACGATGCCGTCGACGCTAAGCAGGTTGCGGCGATGGCTCTGGCCGAAGC
GTCGAGCGGCACCCCGTCCACCGTGTCGACGGTGCTGGTGGGGCTGCTCA
TGCGGCAGTACTCGCCGGCGGGCGTCATCGAGCTCATCGCCACGGTATCG
CTGGCCTTCATGTACCACCGGTGGACTGCCATCTACATGCCCAAGGAGTT
GCGGCGATGGCTCTGGCCGAAGCGTCGAGCGGCACCCCGTCCACCGTGTC
GACGGTGCTGGTGGGGCTGCTCATGCGGCAGTACTCGCCGGCGGGCGTCA
TCGAGCTCATCGCCACGGTATCGCTGGCCTTCATGTACCACCGGTGGACT
GCCATCTACATGCCCAAGGAGTACGAGCCGGAGGTGCTCAAGTTTGTGCA
GAAGCACGGAAAGGCCCTGGGCCTCGACCCGGAACACCCCTGCACCGAGG
AGCAGGCCAAGTGGGAGGACGTCGCCAAAGACGCTCGCGCCGCATCCGCG
AACGAGTGAGTACGAGCCGGAGGTGCTCAAGTTTGTGCAGAAGCACGGAA
AGGCCCTGGGCCTCGACCCGGAACACCCCTGCACCGAGGAGCAGGCCAAG
TGGGAGGACGTCGCCAAAGACGCTCGCGCCGCATCCGCGAACGAGTGA
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