mRNA_L-elsbetiae_contig12610.2108.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
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Overview
Homology
BLAST of mRNA_L-elsbetiae_contig12610.2108.1 vs. uniprot
Match: D7G7C0_ECTSI (Conserved oligomeric Golgi complex subunit 8 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7C0_ECTSI) HSP 1 Score: 219 bits (558), Expect = 1.000e-64 Identity = 113/121 (93.39%), Postives = 116/121 (95.87%), Query Frame = 1
Query: 4 QALHTLSLDHYRVFIQNQECVRHVRTQGKEMERHLSSLLAEVHGLGAEFSVFQREAAELVGGHKRNRQTLKHHMQLVELLEVPQLMDACVRSDLMEEALSIATFASTLERRHRSRRAVSAA 366
+ALHTLSLDHYRVFIQNQECVRHVR QGKEME HL+SLL EVHGLGAEFSVFQREAAELVGGHKRNRQTLKHHMQLVELLEVPQLMDACVRSDLMEEALSIATFASTLERRHRSRR V +A
Sbjct: 58 EALHTLSLDHYRVFIQNQECVRHVRAQGKEMEGHLASLLTEVHGLGAEFSVFQREAAELVGGHKRNRQTLKHHMQLVELLEVPQLMDACVRSDLMEEALSIATFASTLERRHRSRRVVPSA 178
BLAST of mRNA_L-elsbetiae_contig12610.2108.1 vs. uniprot
Match: A0A836CL87_9STRA (Conserved oligomeric Golgi complex subunit 8 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CL87_9STRA) HSP 1 Score: 130 bits (326), Expect = 7.830e-33 Identity = 66/117 (56.41%), Postives = 85/117 (72.65%), Query Frame = 1
Query: 4 QALHTLSLDHYRVFIQNQECVRHVRTQGKEMERHLSSLLAEVHGLGAEFSVFQREAAELVGGHKRNRQTLKHHMQLVELLEVPQLMDACVR-----SDLMEEALSIATFASTLERRH 339
+ALH LSLD YRVFI NQ+CVRH++ +G +M +H+ +L + GL F+ FQ+EAAEL+ GH+RN+QTL HHMQLVELLE+PQLMD CVR S E+AL++A F L RH
Sbjct: 28 EALHDLSLDQYRVFIVNQDCVRHMKLKGADMAQHIRALEEGLEGLAGGFTTFQKEAAELLAGHRRNKQTLAHHMQLVELLEIPQLMDTCVRNSGADSAFAEDALALAGFTQGLLARH 144
BLAST of mRNA_L-elsbetiae_contig12610.2108.1 vs. uniprot
Match: W7TN52_9STRA (Conserved oligomeric Golgi complex subunit 8 n=5 Tax=Monodopsidaceae TaxID=425072 RepID=W7TN52_9STRA) HSP 1 Score: 107 bits (268), Expect = 1.230e-24 Identity = 55/113 (48.67%), Postives = 74/113 (65.49%), Query Frame = 1
Query: 1 RQALHTLSLDHYRVFIQNQECVRHVRTQGKEMERHLSSLLAEVHGLGAEFSVFQREAAELVGGHKRNRQTLKHHMQLVELLEVPQLMDACVRSDLMEEALSIATFASTLERRH 339
+Q L L HY I+N EC+ ++ +G E + L++L EV GL F A +VG KRNRQT +HH+QLVELLEVPQ+MDAC+R+ L +EA+ + FA+TLERRH
Sbjct: 25 QQTLEALYRSHYTTIIENYECMTFIQERGTEFQADLTALQEEVGGLKEACGPFTAGAQAIVGDLKRNRQTFQHHLQLVELLEVPQVMDACLRNGLYDEAVEVVAFANTLERRH 137
BLAST of mRNA_L-elsbetiae_contig12610.2108.1 vs. uniprot
Match: A0A7S2V501_9STRA (Conserved oligomeric Golgi complex subunit 8 (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V501_9STRA) HSP 1 Score: 95.9 bits (237), Expect = 1.130e-20 Identity = 49/62 (79.03%), Postives = 53/62 (85.48%), Query Frame = 1
Query: 157 FQREAAELVGGHKRNRQTLKHHMQLVELLEVPQLMDACVRSDLMEEALSIATFASTLERRHR 342
F EA L+G HKRNRQT +HH+QLVELLEVPQLMDACVR+ L EEALSIA FASTLERRHR
Sbjct: 4 FSSEATVLLGRHKRNRQTGQHHLQLVELLEVPQLMDACVRNGLYEEALSIAQFASTLERRHR 65
BLAST of mRNA_L-elsbetiae_contig12610.2108.1 vs. uniprot
Match: A0A6J8BXY1_MYTCO (Conserved oligomeric Golgi complex subunit 8 n=1 Tax=Mytilus coruscus TaxID=42192 RepID=A0A6J8BXY1_MYTCO) HSP 1 Score: 89.4 bits (220), Expect = 4.010e-19 Identity = 45/114 (39.47%), Postives = 66/114 (57.89%), Query Frame = 1
Query: 4 QALHTLSLDHYRVFIQNQECVRHVRTQGKEMERHLSSLLAEVHGLGAEFSVFQREAAELVGGHKRNRQTLKHHMQLVELLEVPQLMDACVRSDLMEEALSIATFASTLERRHRS 345
Q L+ HY+ FIQ EC R + + +E+H+ +LL + L E V ++A E+ + N TL+ H QL+E+LE+PQLMD CVR+ EEAL +A LE++H S
Sbjct: 59 QETQNLAFTHYKTFIQTAECSREIFEDFQIIEKHVDNLLQNLPSLSEECEVVTKQAQEINSSRRMNNLTLQRHTQLLEVLEIPQLMDTCVRNGYFEEALELAAHVKRLEKKHSS 172
BLAST of mRNA_L-elsbetiae_contig12610.2108.1 vs. uniprot
Match: A0A6J8C3C0_MYTCO (Conserved oligomeric Golgi complex subunit 8 n=1 Tax=Mytilus coruscus TaxID=42192 RepID=A0A6J8C3C0_MYTCO) HSP 1 Score: 89.4 bits (220), Expect = 3.780e-18 Identity = 45/114 (39.47%), Postives = 66/114 (57.89%), Query Frame = 1
Query: 4 QALHTLSLDHYRVFIQNQECVRHVRTQGKEMERHLSSLLAEVHGLGAEFSVFQREAAELVGGHKRNRQTLKHHMQLVELLEVPQLMDACVRSDLMEEALSIATFASTLERRHRS 345
Q L+ HY+ FIQ EC R + + +E+H+ +LL + L E V ++A E+ + N TL+ H QL+E+LE+PQLMD CVR+ EEAL +A LE++H S
Sbjct: 59 QETQNLAFTHYKTFIQTAECSREIFEDFQIIEKHVDNLLQNLPSLSEECEVVTKQAQEINSSRRMNNLTLQRHTQLLEVLEIPQLMDTCVRNGYFEEALELAAHVKRLEKKHSS 172
BLAST of mRNA_L-elsbetiae_contig12610.2108.1 vs. uniprot
Match: A0A8B6EIA4_MYTGA (Conserved oligomeric Golgi complex subunit 8 n=3 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6EIA4_MYTGA) HSP 1 Score: 88.6 bits (218), Expect = 7.070e-18 Identity = 44/112 (39.29%), Postives = 65/112 (58.04%), Query Frame = 1
Query: 4 QALHTLSLDHYRVFIQNQECVRHVRTQGKEMERHLSSLLAEVHGLGAEFSVFQREAAELVGGHKRNRQTLKHHMQLVELLEVPQLMDACVRSDLMEEALSIATFASTLERRH 339
Q L+ HY+ FIQ EC R + + +E+H+ +LL + L E V ++A E+ + N TL+ H QL+E+LE+PQLMD CVR+ EEAL +A LE++H
Sbjct: 59 QETQNLAFTHYKTFIQTAECSREIFEDFQIIEKHVDNLLQNLPSLSEECEVVTKQAQEINSSRRMNNLTLQRHTQLLEVLEIPQLMDTCVRNGYFEEALELAAHVKRLEKKH 170
BLAST of mRNA_L-elsbetiae_contig12610.2108.1 vs. uniprot
Match: UPI000E1B7DEE (conserved oligomeric Golgi complex subunit 8-like n=1 Tax=Nothoprocta perdicaria TaxID=30464 RepID=UPI000E1B7DEE) HSP 1 Score: 88.2 bits (217), Expect = 9.330e-18 Identity = 46/109 (42.20%), Postives = 64/109 (58.72%), Query Frame = 1
Query: 19 LSLDHYRVFIQNQECVRHVRTQGKEMERHLSSLLAEVHGLGAEFSVFQREAAELVGGHKRNRQTLKHHMQLVELLEVPQLMDACVRSDLMEEALSIATFASTLERRHRS 345
L+ +HYR FI++ EC +ER L SLLA + L F R+A E+ + N TL H +++E+LE+PQLMD CVR+ EEAL +A + LER+HRS
Sbjct: 6 LAFEHYRAFIRSAECTGRAGRGFGGIERRLGSLLARLPALQEACRSFMRDAEEIACSRRMNSLTLNRHTEILEILEIPQLMDTCVRNGYYEEALELAAYVRRLERKHRS 114
BLAST of mRNA_L-elsbetiae_contig12610.2108.1 vs. uniprot
Match: A0A8C6YYX1_NOTPE (Conserved oligomeric Golgi complex subunit 8 n=1 Tax=Nothoprocta perdicaria TaxID=30464 RepID=A0A8C6YYX1_NOTPE) HSP 1 Score: 88.2 bits (217), Expect = 9.520e-18 Identity = 46/109 (42.20%), Postives = 64/109 (58.72%), Query Frame = 1
Query: 19 LSLDHYRVFIQNQECVRHVRTQGKEMERHLSSLLAEVHGLGAEFSVFQREAAELVGGHKRNRQTLKHHMQLVELLEVPQLMDACVRSDLMEEALSIATFASTLERRHRS 345
L+ +HYR FI++ EC +ER L SLLA + L F R+A E+ + N TL H +++E+LE+PQLMD CVR+ EEAL +A + LER+HRS
Sbjct: 153 LAFEHYRAFIRSAECTGRAGRGFGGIERRLGSLLARLPALQEACRSFMRDAEEIACSRRMNSLTLNRHTEILEILEIPQLMDTCVRNGYYEEALELAAYVRRLERKHRS 261
BLAST of mRNA_L-elsbetiae_contig12610.2108.1 vs. uniprot
Match: A0A7S2SW00_9STRA (Conserved oligomeric Golgi complex subunit 8 (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SW00_9STRA) HSP 1 Score: 86.7 bits (213), Expect = 3.330e-17 Identity = 47/103 (45.63%), Postives = 63/103 (61.17%), Query Frame = 1
Query: 46 IQNQECVRHVRTQGKEMERHLSSLLAEVHGLGAEFSVFQREAAELVGGHKRNRQTLKHHMQLVELLEVPQLMDACVRSDLMEEALSIATFASTLERRHRSRRA 354
I N +CVR + +GK + + E+ + F A ++ HK NRQTL+ HMQ+++LLE+PQLMDACVR+ L E AL IA FA+ LERRH RA
Sbjct: 1 IANHDCVRALAREGKAVGEAHQLVNDELEAFKGDAESFMSAATTVMARHKLNRQTLQQHMQILDLLELPQLMDACVRNGLSEAALDIAAFANILERRHARHRA 103 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12610.2108.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig12610.2108.1 >prot_L-elsbetiae_contig12610.2108.1 ID=prot_L-elsbetiae_contig12610.2108.1|Name=mRNA_L-elsbetiae_contig12610.2108.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=132bp RQALHTLSLDHYRVFIQNQECVRHVRTQGKEMERHLSSLLAEVHGLGAEFback to top mRNA from alignment at L-elsbetiae_contig12610:18..907- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig12610.2108.1 ID=mRNA_L-elsbetiae_contig12610.2108.1|Name=mRNA_L-elsbetiae_contig12610.2108.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=890bp|location=Sequence derived from alignment at L-elsbetiae_contig12610:18..907- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig12610:18..907- >mRNA_L-elsbetiae_contig12610.2108.1 ID=mRNA_L-elsbetiae_contig12610.2108.1|Name=mRNA_L-elsbetiae_contig12610.2108.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=792bp|location=Sequence derived from alignment at L-elsbetiae_contig12610:18..907- (Laminarionema elsbetiae ELsaHSoW15)back to top |