mRNA_L-elsbetiae_contig12610.2108.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig12610.2108.1
Unique NamemRNA_L-elsbetiae_contig12610.2108.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig12610.2108.1 vs. uniprot
Match: D7G7C0_ECTSI (Conserved oligomeric Golgi complex subunit 8 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7C0_ECTSI)

HSP 1 Score: 219 bits (558), Expect = 1.000e-64
Identity = 113/121 (93.39%), Postives = 116/121 (95.87%), Query Frame = 1 
Query:    4 QALHTLSLDHYRVFIQNQECVRHVRTQGKEMERHLSSLLAEVHGLGAEFSVFQREAAELVGGHKRNRQTLKHHMQLVELLEVPQLMDACVRSDLMEEALSIATFASTLERRHRSRRAVSAA 366
            +ALHTLSLDHYRVFIQNQECVRHVR QGKEME HL+SLL EVHGLGAEFSVFQREAAELVGGHKRNRQTLKHHMQLVELLEVPQLMDACVRSDLMEEALSIATFASTLERRHRSRR V +A
Sbjct:   58 EALHTLSLDHYRVFIQNQECVRHVRAQGKEMEGHLASLLTEVHGLGAEFSVFQREAAELVGGHKRNRQTLKHHMQLVELLEVPQLMDACVRSDLMEEALSIATFASTLERRHRSRRVVPSA 178
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BLAST of mRNA_L-elsbetiae_contig12610.2108.1 vs. uniprot
Match: A0A836CL87_9STRA (Conserved oligomeric Golgi complex subunit 8 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CL87_9STRA)

HSP 1 Score: 130 bits (326), Expect = 7.830e-33
Identity = 66/117 (56.41%), Postives = 85/117 (72.65%), Query Frame = 1 
Query:    4 QALHTLSLDHYRVFIQNQECVRHVRTQGKEMERHLSSLLAEVHGLGAEFSVFQREAAELVGGHKRNRQTLKHHMQLVELLEVPQLMDACVR-----SDLMEEALSIATFASTLERRH 339
            +ALH LSLD YRVFI NQ+CVRH++ +G +M +H+ +L   + GL   F+ FQ+EAAEL+ GH+RN+QTL HHMQLVELLE+PQLMD CVR     S   E+AL++A F   L  RH
Sbjct:   28 EALHDLSLDQYRVFIVNQDCVRHMKLKGADMAQHIRALEEGLEGLAGGFTTFQKEAAELLAGHRRNKQTLAHHMQLVELLEIPQLMDTCVRNSGADSAFAEDALALAGFTQGLLARH 144
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BLAST of mRNA_L-elsbetiae_contig12610.2108.1 vs. uniprot
Match: W7TN52_9STRA (Conserved oligomeric Golgi complex subunit 8 n=5 Tax=Monodopsidaceae TaxID=425072 RepID=W7TN52_9STRA)

HSP 1 Score: 107 bits (268), Expect = 1.230e-24
Identity = 55/113 (48.67%), Postives = 74/113 (65.49%), Query Frame = 1 
Query:    1 RQALHTLSLDHYRVFIQNQECVRHVRTQGKEMERHLSSLLAEVHGLGAEFSVFQREAAELVGGHKRNRQTLKHHMQLVELLEVPQLMDACVRSDLMEEALSIATFASTLERRH 339
            +Q L  L   HY   I+N EC+  ++ +G E +  L++L  EV GL      F   A  +VG  KRNRQT +HH+QLVELLEVPQ+MDAC+R+ L +EA+ +  FA+TLERRH
Sbjct:   25 QQTLEALYRSHYTTIIENYECMTFIQERGTEFQADLTALQEEVGGLKEACGPFTAGAQAIVGDLKRNRQTFQHHLQLVELLEVPQVMDACLRNGLYDEAVEVVAFANTLERRH 137
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BLAST of mRNA_L-elsbetiae_contig12610.2108.1 vs. uniprot
Match: A0A7S2V501_9STRA (Conserved oligomeric Golgi complex subunit 8 (Fragment) n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V501_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 1.130e-20
Identity = 49/62 (79.03%), Postives = 53/62 (85.48%), Query Frame = 1 
Query:  157 FQREAAELVGGHKRNRQTLKHHMQLVELLEVPQLMDACVRSDLMEEALSIATFASTLERRHR 342
            F  EA  L+G HKRNRQT +HH+QLVELLEVPQLMDACVR+ L EEALSIA FASTLERRHR
Sbjct:    4 FSSEATVLLGRHKRNRQTGQHHLQLVELLEVPQLMDACVRNGLYEEALSIAQFASTLERRHR 65
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BLAST of mRNA_L-elsbetiae_contig12610.2108.1 vs. uniprot
Match: A0A6J8BXY1_MYTCO (Conserved oligomeric Golgi complex subunit 8 n=1 Tax=Mytilus coruscus TaxID=42192 RepID=A0A6J8BXY1_MYTCO)

HSP 1 Score: 89.4 bits (220), Expect = 4.010e-19
Identity = 45/114 (39.47%), Postives = 66/114 (57.89%), Query Frame = 1 
Query:    4 QALHTLSLDHYRVFIQNQECVRHVRTQGKEMERHLSSLLAEVHGLGAEFSVFQREAAELVGGHKRNRQTLKHHMQLVELLEVPQLMDACVRSDLMEEALSIATFASTLERRHRS 345
            Q    L+  HY+ FIQ  EC R +    + +E+H+ +LL  +  L  E  V  ++A E+    + N  TL+ H QL+E+LE+PQLMD CVR+   EEAL +A     LE++H S
Sbjct:   59 QETQNLAFTHYKTFIQTAECSREIFEDFQIIEKHVDNLLQNLPSLSEECEVVTKQAQEINSSRRMNNLTLQRHTQLLEVLEIPQLMDTCVRNGYFEEALELAAHVKRLEKKHSS 172
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BLAST of mRNA_L-elsbetiae_contig12610.2108.1 vs. uniprot
Match: A0A6J8C3C0_MYTCO (Conserved oligomeric Golgi complex subunit 8 n=1 Tax=Mytilus coruscus TaxID=42192 RepID=A0A6J8C3C0_MYTCO)

HSP 1 Score: 89.4 bits (220), Expect = 3.780e-18
Identity = 45/114 (39.47%), Postives = 66/114 (57.89%), Query Frame = 1 
Query:    4 QALHTLSLDHYRVFIQNQECVRHVRTQGKEMERHLSSLLAEVHGLGAEFSVFQREAAELVGGHKRNRQTLKHHMQLVELLEVPQLMDACVRSDLMEEALSIATFASTLERRHRS 345
            Q    L+  HY+ FIQ  EC R +    + +E+H+ +LL  +  L  E  V  ++A E+    + N  TL+ H QL+E+LE+PQLMD CVR+   EEAL +A     LE++H S
Sbjct:   59 QETQNLAFTHYKTFIQTAECSREIFEDFQIIEKHVDNLLQNLPSLSEECEVVTKQAQEINSSRRMNNLTLQRHTQLLEVLEIPQLMDTCVRNGYFEEALELAAHVKRLEKKHSS 172
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BLAST of mRNA_L-elsbetiae_contig12610.2108.1 vs. uniprot
Match: A0A8B6EIA4_MYTGA (Conserved oligomeric Golgi complex subunit 8 n=3 Tax=Mytilus galloprovincialis TaxID=29158 RepID=A0A8B6EIA4_MYTGA)

HSP 1 Score: 88.6 bits (218), Expect = 7.070e-18
Identity = 44/112 (39.29%), Postives = 65/112 (58.04%), Query Frame = 1 
Query:    4 QALHTLSLDHYRVFIQNQECVRHVRTQGKEMERHLSSLLAEVHGLGAEFSVFQREAAELVGGHKRNRQTLKHHMQLVELLEVPQLMDACVRSDLMEEALSIATFASTLERRH 339
            Q    L+  HY+ FIQ  EC R +    + +E+H+ +LL  +  L  E  V  ++A E+    + N  TL+ H QL+E+LE+PQLMD CVR+   EEAL +A     LE++H
Sbjct:   59 QETQNLAFTHYKTFIQTAECSREIFEDFQIIEKHVDNLLQNLPSLSEECEVVTKQAQEINSSRRMNNLTLQRHTQLLEVLEIPQLMDTCVRNGYFEEALELAAHVKRLEKKH 170
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BLAST of mRNA_L-elsbetiae_contig12610.2108.1 vs. uniprot
Match: UPI000E1B7DEE (conserved oligomeric Golgi complex subunit 8-like n=1 Tax=Nothoprocta perdicaria TaxID=30464 RepID=UPI000E1B7DEE)

HSP 1 Score: 88.2 bits (217), Expect = 9.330e-18
Identity = 46/109 (42.20%), Postives = 64/109 (58.72%), Query Frame = 1 
Query:   19 LSLDHYRVFIQNQECVRHVRTQGKEMERHLSSLLAEVHGLGAEFSVFQREAAELVGGHKRNRQTLKHHMQLVELLEVPQLMDACVRSDLMEEALSIATFASTLERRHRS 345
            L+ +HYR FI++ EC          +ER L SLLA +  L      F R+A E+    + N  TL  H +++E+LE+PQLMD CVR+   EEAL +A +   LER+HRS
Sbjct:    6 LAFEHYRAFIRSAECTGRAGRGFGGIERRLGSLLARLPALQEACRSFMRDAEEIACSRRMNSLTLNRHTEILEILEIPQLMDTCVRNGYYEEALELAAYVRRLERKHRS 114
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BLAST of mRNA_L-elsbetiae_contig12610.2108.1 vs. uniprot
Match: A0A8C6YYX1_NOTPE (Conserved oligomeric Golgi complex subunit 8 n=1 Tax=Nothoprocta perdicaria TaxID=30464 RepID=A0A8C6YYX1_NOTPE)

HSP 1 Score: 88.2 bits (217), Expect = 9.520e-18
Identity = 46/109 (42.20%), Postives = 64/109 (58.72%), Query Frame = 1 
Query:   19 LSLDHYRVFIQNQECVRHVRTQGKEMERHLSSLLAEVHGLGAEFSVFQREAAELVGGHKRNRQTLKHHMQLVELLEVPQLMDACVRSDLMEEALSIATFASTLERRHRS 345
            L+ +HYR FI++ EC          +ER L SLLA +  L      F R+A E+    + N  TL  H +++E+LE+PQLMD CVR+   EEAL +A +   LER+HRS
Sbjct:  153 LAFEHYRAFIRSAECTGRAGRGFGGIERRLGSLLARLPALQEACRSFMRDAEEIACSRRMNSLTLNRHTEILEILEIPQLMDTCVRNGYYEEALELAAYVRRLERKHRS 261
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BLAST of mRNA_L-elsbetiae_contig12610.2108.1 vs. uniprot
Match: A0A7S2SW00_9STRA (Conserved oligomeric Golgi complex subunit 8 (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SW00_9STRA)

HSP 1 Score: 86.7 bits (213), Expect = 3.330e-17
Identity = 47/103 (45.63%), Postives = 63/103 (61.17%), Query Frame = 1 
Query:   46 IQNQECVRHVRTQGKEMERHLSSLLAEVHGLGAEFSVFQREAAELVGGHKRNRQTLKHHMQLVELLEVPQLMDACVRSDLMEEALSIATFASTLERRHRSRRA 354
            I N +CVR +  +GK +      +  E+     +   F   A  ++  HK NRQTL+ HMQ+++LLE+PQLMDACVR+ L E AL IA FA+ LERRH   RA
Sbjct:    1 IANHDCVRALAREGKAVGEAHQLVNDELEAFKGDAESFMSAATTVMARHKLNRQTLQQHMQILDLLELPQLMDACVRNGLSEAALDIAAFANILERRHARHRA 103
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig12610.2108.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7G7C0_ECTSI1.000e-6493.39Conserved oligomeric Golgi complex subunit 8 n=2 T... [more]
A0A836CL87_9STRA7.830e-3356.41Conserved oligomeric Golgi complex subunit 8 n=1 T... [more]
W7TN52_9STRA1.230e-2448.67Conserved oligomeric Golgi complex subunit 8 n=5 T... [more]
A0A7S2V501_9STRA1.130e-2079.03Conserved oligomeric Golgi complex subunit 8 (Frag... [more]
A0A6J8BXY1_MYTCO4.010e-1939.47Conserved oligomeric Golgi complex subunit 8 n=1 T... [more]
A0A6J8C3C0_MYTCO3.780e-1839.47Conserved oligomeric Golgi complex subunit 8 n=1 T... [more]
A0A8B6EIA4_MYTGA7.070e-1839.29Conserved oligomeric Golgi complex subunit 8 n=3 T... [more]
UPI000E1B7DEE9.330e-1842.20conserved oligomeric Golgi complex subunit 8-like ... [more]
A0A8C6YYX1_NOTPE9.520e-1842.20Conserved oligomeric Golgi complex subunit 8 n=1 T... [more]
A0A7S2SW00_9STRA3.330e-1745.63Conserved oligomeric Golgi complex subunit 8 (Frag... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig12610contigL-elsbetiae_contig12610:18..907 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score220.7
Seed ortholog evalue4e-55
Seed eggNOG ortholog2880.D7G7C0
Preferred nameCOG8
KEGG koko:K20295
Hectar predicted targeting categoryother localisation
GOsGO:0000003,GO:0000139,GO:0003006,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005794,GO:0005802,GO:0005829,GO:0006810,GO:0006886,GO:0006888,GO:0006891,GO:0007275,GO:0007548,GO:0008104,GO:0008150,GO:0008406,GO:0009653,GO:0009887,GO:0009987,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016192,GO:0017119,GO:0022414,GO:0030334,GO:0031090,GO:0031984,GO:0032258,GO:0032501,GO:0032502,GO:0032588,GO:0032879,GO:0032991,GO:0033036,GO:0033365,GO:0034613,GO:0035262,GO:0040012,GO:0042886,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044431,GO:0044444,GO:0044446,GO:0044464,GO:0045137,GO:0045184,GO:0046907,GO:0048193,GO:0048513,GO:0048608,GO:0048731,GO:0048856,GO:0050789,GO:0050794,GO:0051179,GO:0051234,GO:0051270,GO:0051641,GO:0051649,GO:0061458,GO:0061919,GO:0065007,GO:0070727,GO:0071702,GO:0071705,GO:0072665,GO:0098588,GO:0098791,GO:0099023,GO:2000145
EggNOG free text desc.intra-Golgi vesicle-mediated transport
EggNOG OGsKOG2069@1,KOG2069@2759
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons2
Model size396
Cds size396
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815452.8663743-CDS-L-elsbetiae_contig12610:17..1851622815452.8663743-CDS-L-elsbetiae_contig12610:17..185Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12610 18..185 -
1691682905.0353754-CDS-L-elsbetiae_contig12610:17..1851691682905.0353754-CDS-L-elsbetiae_contig12610:17..185Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12610 18..185 -
1622815452.8811412-CDS-L-elsbetiae_contig12610:679..9071622815452.8811412-CDS-L-elsbetiae_contig12610:679..907Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12610 680..907 -
1691682905.0497081-CDS-L-elsbetiae_contig12610:679..9071691682905.0497081-CDS-L-elsbetiae_contig12610:679..907Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig12610 680..907 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig12610.2108.1prot_L-elsbetiae_contig12610.2108.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig12610 18..907 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig12610.2108.1

>prot_L-elsbetiae_contig12610.2108.1 ID=prot_L-elsbetiae_contig12610.2108.1|Name=mRNA_L-elsbetiae_contig12610.2108.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=132bp
RQALHTLSLDHYRVFIQNQECVRHVRTQGKEMERHLSSLLAEVHGLGAEF
SVFQREAAELVGGHKRNRQTLKHHMQLVELLEVPQLMDACVRSDLMEEAL
SIATFASTLERRHRSRRAVSAASPRCEKVRKR
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mRNA from alignment at L-elsbetiae_contig12610:18..907-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig12610.2108.1 ID=mRNA_L-elsbetiae_contig12610.2108.1|Name=mRNA_L-elsbetiae_contig12610.2108.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=890bp|location=Sequence derived from alignment at L-elsbetiae_contig12610:18..907- (Laminarionema elsbetiae ELsaHSoW15)
CGGCAGGCGCTGCACACGCTCAGCCTGGATCACTACCGGGTGTTCATCCA
GAACCAGGAGTGCGTTCGGCACGTGCGGACGCAGGGGAAGGAGATGGAGC
GGCACCTGTCGTCGCTCTTGGCGGAGGTGCACGGGCTCGGCGCCGAGTTC
TCGGTTTTCCAGAGGGAGGCGGCGGAGCTGGTGGGGGGGCATAAGAGGAA
CAGGCAGACGCTCAAGCACCACATGCAGGTATTTTTATGACACTTTTTTT
ATGATGAAGGCTAAGGTTCAGTTGCGGGCATGAGTACATACCGCAATCAT
GCGAGTCATCGCACCCCCGTGTACCGATTTTCAAAGCTTTATTACGTGGG
GTGCCGGCACCGGAAAGGGTGGCAATTGGGGCGATCACGTCGAGAGTTAC
ATAGGTCTAATATTTTTGGTGATAATCCAAGGCGCTCACATAAATTTGCA
GCGGGCGAAGAGGATGGACACTCTCGTGATCACGCTCGTAAATTGCGGTG
CGAGCAGTCGGCTTTTGGTGAGGTTTCGGCTCCACTTGCGCTGTTGCTCT
CCTAGCCCCGAAAGGGTTTATGTAGATGTGTGATTTAGCGCTGAGAATAT
TTATTGTAGTAGCGCGGCGCGCGTTTCAGAGATTTGCGGCCGGGGTCGGA
ACCGGAGCAGCACCAAGTTTTACATTTGTCTTGGTCGGCATCGCACGCAT
CCCACCACCAAATCCAACACAGCTGGTGGAGCTGCTGGAGGTGCCGCAGC
TGATGGACGCGTGTGTGCGCAGCGACCTCATGGAGGAGGCCTTGTCCATC
GCCACCTTCGCCAGCACTCTGGAGAGGAGGCATCGGAGCCGCCGAGCTGT
ATCGGCAGCGTCCCCCAGGTGCGAGAAAGTACGGAAGCGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig12610:18..907-

>mRNA_L-elsbetiae_contig12610.2108.1 ID=mRNA_L-elsbetiae_contig12610.2108.1|Name=mRNA_L-elsbetiae_contig12610.2108.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=792bp|location=Sequence derived from alignment at L-elsbetiae_contig12610:18..907- (Laminarionema elsbetiae ELsaHSoW15)
CGGCAGGCGCTGCACACGCTCAGCCTGGATCACTACCGGGTGTTCATCCA
GAACCAGGAGTGCGTTCGGCACGTGCGGACGCAGGGGAAGGAGATGGAGC
GGCACCTGTCGTCGCTCTTGGCGGAGGTGCACGGGCTCGGCGCCGAGTTC
TCGGTTTTCCAGAGGGAGGCGGCGGAGCTGGTGGGGGGGCATAAGAGGAA
CAGGCAGACGCTCAAGCACCACATGCAGCGGCAGGCGCTGCACACGCTCA
GCCTGGATCACTACCGGGTGTTCATCCAGAACCAGGAGTGCGTTCGGCAC
GTGCGGACGCAGGGGAAGGAGATGGAGCGGCACCTGTCGTCGCTCTTGGC
GGAGGTGCACGGGCTCGGCGCCGAGTTCTCGGTTTTCCAGAGGGAGGCGG
CGGAGCTGGTGGGGGGGCATAAGAGGAACAGGCAGACGCTCAAGCACCAC
ATGCAGCTGGTGGAGCTGCTGGAGGTGCCGCAGCTGATGGACGCGTGTGT
GCGCAGCGACCTCATGGAGGAGGCCTTGTCCATCGCCACCTTCGCCAGCA
CTCTGGAGAGGAGGCATCGGAGCCGCCGAGCTGTATCGGCAGCGTCCCCC
AGGTGCGAGAAAGTACGGAAGCGGCTGGTGGAGCTGCTGGAGGTGCCGCA
GCTGATGGACGCGTGTGTGCGCAGCGACCTCATGGAGGAGGCCTTGTCCA
TCGCCACCTTCGCCAGCACTCTGGAGAGGAGGCATCGGAGCCGCCGAGCT
GTATCGGCAGCGTCCCCCAGGTGCGAGAAAGTACGGAAGCGG
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