mRNA_L-elsbetiae_contig1181.1564.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
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Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1181.1564.1 vs. uniprot
Match: A0A6H5JA45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA45_9PHAE) HSP 1 Score: 587 bits (1512), Expect = 8.400e-189 Identity = 359/579 (62.00%), Postives = 415/579 (71.68%), Query Frame = 1
Query: 778 RHSRALQEDSRVFPGGLELDCNLVVPGAGVAEGGPTIIEPAE-----GDVLVIGAATNVSWGLDIFEEGTLAT-DGYSMTTSTENLPSDMDIGTVNITLFNGDTVVRTFENNSNTGEFSWVIPSDLAEARTYRVAVWDTASRICGISSEFGISGELSITVTQFEGRNEGGTVDMSPLRLGENASSGGGREIYSCGGSVGIAWSHSGLLEEVDVRVCKEPNTSGTLAGLEDEDL-----------ELDSCLDPVSQSVPANSSFLNATLTTVEGDEAAKDALCAVYGDGFFARVSWAGDGSTADVFG------ASGITVPVLGGVFLKPNDTTPMSVLEPQLISWDGRTGVGADALVDIILRSRSRGNTSSGAFRVVVESDPRASTDGEFLWEDPWTAFTEEERASEAVFQDKFYLELFDAVGGGLICRSGDFTLESDANPTDSDTSTLXXXXXXXXXXXXXXXXXXXVACPYYDKIVRRRRNDLRPSLIDVDDTYIIDGEGQPAILALDSHVIPLAHAHFWPAD--GSASSSFTAAPFVLRRAASVRNIGGXXXXXXXS--------NSPSWARAVLTM 2415
R RAL E+ R FPGGLELDC + VPG GV GG P E GDVLV+G +V+W LD+FE GT T D Y S + +D+D+G VNITLFN D V+TF N NTG + W I D+ ++R YR+AVWDTA+RICGIS EF ISGELSITVT+FEG NEG TVD+SPLR G+ +SS GG +IYSCGGSVG+ W+ +GLLEEV+VRVC+EP +SG LAGLEDEDL E CLDPVS V ANSSFLNA+LT C V+G+GF+A+V+W G ADVFG A G++VPVLGGVFL PND+TPMS+ E Q+I W+GRTG G +A VDIILRSR+ N S A+ VV DPR ST+GEF W++P AFT +E AS A F+DKF+LE+FDAVGGGLICRS D +L +D +SDTSTLXXXXXXXXXXXXXXXXXXXVACPYYDKIVRRR+ND RPSLIDVDDTYIIDGEGQPAILALDSHVIPLAHAHFWP D GS S+S +VLRRA S N GGXXXXXXX NS SW R VL M
Sbjct: 495 RPGRALTEEPRTFPGGLELDCTVTVPGPGVEGGGAVFEAPLEASLSAGDVLVLGDVASVTWSLDLFETGTATTVDSYGEY-SVSRVITDLDVGQVNITLFNADVEVQTFVNTENTGTYRWTIADDVEQSRFYRLAVWDTATRICGISYEFAISGELSITVTEFEGYNEG-TVDISPLRRGDASSSQGGGQIYSCGGSVGVGWNFTGLLEEVNVRVCQEPASSGNLAGLEDEDLQNTGSPVTEDGEFFICLDPVSGDVLANSSFLNASLTATAA------TTCGVWGEGFYAKVTWVNSGD-ADVFGLSNDPDAGGVSVPVLGGVFLTPNDSTPMSIAESQVIKWEGRTGGGLEAEVDIILRSRA--NLSDDAYYVVAAGDPRTSTNGEFTWDNPSEAFTADELASPATFEDKFFLEVFDAVGGGLICRSTDISLAADYASDESDTSTLXXXXXXXXXXXXXXXXXXXVACPYYDKIVRRRQNDRRPSLIDVDDTYIIDGEGQPAILALDSHVIPLAHAHFWPIDVNGSLSASRNGPSYVLRRAGSG-NRGGXXXXXXXXXXXXXXXXNSSSWTRTVLAM 1061
BLAST of mRNA_L-elsbetiae_contig1181.1564.1 vs. uniprot
Match: D7G0R6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0R6_ECTSI) HSP 1 Score: 413 bits (1061), Expect = 1.970e-133 Identity = 226/384 (58.85%), Postives = 270/384 (70.31%), Query Frame = 1
Query: 778 RHSRALQEDSRVFPGGLELDCNLVVPGAGVAEGGPTIIEPAEGDVLVIGAATNVSWGLDIFEEGTLATDGYSMTTSTENLPSDMDIGTVNITLFNGDTVVRTFENNSNTGEFSWVIPSDLAEARTYRVAVWDTASRICGISSEFGISGELSITVTQFEGRNEGGTVDMSPLRLGENASSGGGREIYSCGGSVGIAWSHSGLLEEVDVRVCKEPNTSGTLAGLEDEDL-----------ELDSCLDPVSQSVPANSSFLNATLTTVEGDEAAKDALCAVYGDGFFARVSWAGDGSTADVFG------ASGITVPVLGGVFLKPNDTTPMSVLEPQLISWDGRTGVGADALVDIILRSRSRGNTSSGAFRVVVESDPRASTDGEFL 1878
RH RAL E+ R FPGGLEL C + VPG+GV GG P EGDVLV+G +VSW LD+FE GT A S S +L +D+D+G VNITLFN D V+TF N NTG + W I DL ++R YR+AVWDTA+RICGIS EF ISGELSITVT+FEG NEG TVD+SPLR G+ ASS GG +IYSCGGSVG+ W+ +GLLEEV+VRVC+EP +SGTLAGLEDEDL E CLDPVS V ANSSFLNA+LT + D C V+G+GF+A+V+W D ADVFG A G++VPVLGGVFLKPND+TPMS+ E QLISW+G TGVG +A VDIILRS++ N S A+ VV + R STDG +
Sbjct: 65 RHGRALAEEPRTFPGGLELSCTVTVPGSGVEGGGSVFDGPLEGDVLVLGDVASVSWSLDLFETGTAAAGDPSGPYSASSLITDLDVGQVNITLFNADVEVQTFVNTDNTGTYRWTIADDLEQSRFYRLAVWDTATRICGISYEFAISGELSITVTEFEGYNEG-TVDISPLRRGDAASSEGGGQIYSCGGSVGVGWNFTGLLEEVNVRVCQEPASSGTLAGLEDEDLLNTGSPVTEDGEFFICLDPVSGDVLANSSFLNASLTATAATTS--DGTCGVWGEGFYAKVTWV-DSGDADVFGLSNDPDAGGVSVPVLGGVFLKPNDSTPMSIAESQLISWEGLTGVGENAQVDIILRSKA--NLSDDAYYVVAAGNRRNSTDGSLV 442
BLAST of mRNA_L-elsbetiae_contig1181.1564.1 vs. uniprot
Match: D7G0R7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0R7_ECTSI) HSP 1 Score: 166 bits (420), Expect = 1.040e-40 Identity = 124/187 (66.31%), Postives = 138/187 (73.80%), Query Frame = 1
Query: 1870 EFLWEDPWTAFTEEERASEAVFQDKFYLELFDAVGGGLICRSGDFTLESDANPTDSDTSTLXXXXXXXXXXXXXXXXXXXVACPYYDKIVRRR-RNDLRPSLIDVDDTYIIDGEGQPAILALDSHVIPLAHAHFWPAD--GSASSSFTAAPFVLRRAAS-VRNIGGXXXXXXXSNSPSWARAVLTMG 2418
EF W++P AFT +E AS A F+D+F+LE+FDAVGGGLICRS +F+LE+D +SDTST XXXXXXXXXXXXXXXXXXX RNDLRPSLIDVDDTYIIDGEGQPAILALDSHVIPLAHAHFWP D GS ++S +VLRRA S XXXXXXX NS SW R VL MG
Sbjct: 11 EFSWDNPSEAFTPDELASAATFEDRFFLEVFDAVGGGLICRSPEFSLEADDASNESDTSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRNDLRPSLIDVDDTYIIDGEGQPAILALDSHVIPLAHAHFWPIDVTGSLNASRNGPSYVLRRAGSGXXXXXXXXXXXXXXNSGSWTRTVLAMG 197 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1181.1564.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 3
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1181.1564.1 >prot_L-elsbetiae_contig1181.1564.1 ID=prot_L-elsbetiae_contig1181.1564.1|Name=mRNA_L-elsbetiae_contig1181.1564.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=475bp MTTSTENLPSDMDIGTVNITLFNGDTVVRTFENNSNTGEFSWVIPSDLAEback to top mRNA from alignment at L-elsbetiae_contig1181:10960..26191- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1181.1564.1 ID=mRNA_L-elsbetiae_contig1181.1564.1|Name=mRNA_L-elsbetiae_contig1181.1564.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=15232bp|location=Sequence derived from alignment at L-elsbetiae_contig1181:10960..26191- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1181:10960..26191- >mRNA_L-elsbetiae_contig1181.1564.1 ID=mRNA_L-elsbetiae_contig1181.1564.1|Name=mRNA_L-elsbetiae_contig1181.1564.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2850bp|location=Sequence derived from alignment at L-elsbetiae_contig1181:10960..26191- (Laminarionema elsbetiae ELsaHSoW15)back to top |