prot_L-elsbetiae_contig1181.1564.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig1181.1564.1
Unique Nameprot_L-elsbetiae_contig1181.1564.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length475
Homology
BLAST of mRNA_L-elsbetiae_contig1181.1564.1 vs. uniprot
Match: A0A6H5JA45_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JA45_9PHAE)

HSP 1 Score: 522 bits (1344), Expect = 4.500e-169
Identity = 317/492 (64.43%), Postives = 366/492 (74.39%), Query Frame = 0
Query:   10 SDMDIGTVNITLFNGDTVVRTFENNSNTGEFSWVIPSDLAEARTYRVAVWDTASRICGISSEFGISGELSITVTQFEGRNEGGTVDMSPLRLGENASSGGGREIYSCGGSVGIAWSHSGLLEEVDVRVCKEPNTSGTLAGLEDEDL-----------ELDSCLDPVSQSVPANSSFLNATLTTVEGDEAAKDALCAVYGDGFFARVSWAGDGSTADVFG------ASGITVPVLGGVFLKPNDTTPMSVLEPQLISWDGRTGVGADALVDIILRSRSRGNTSSGAFRVVVESDPRASTDGEFLWEDPWTAFTEEERASEAVFQDKFYLELFDAVGGGLICRSGDFTLESDANPTDSDTSTLXXXXXXXXXXXXXXXXXXXVACPYYDKIVRRRRNDLRPSLIDVDDTYIIDGEGQPAILALDSHVIPLAHAHFWPAD--GSASSSFTAAPFVLRRAASVRNIGGXXXXXXXS--------NSPSWARAVLTM 474
            +D+D+G VNITLFN D  V+TF N  NTG + W I  D+ ++R YR+AVWDTA+RICGIS EF ISGELSITVT+FEG NEG TVD+SPLR G+ +SS GG +IYSCGGSVG+ W+ +GLLEEV+VRVC+EP +SG LAGLEDEDL           E   CLDPVS  V ANSSFLNA+LT            C V+G+GF+A+V+W   G  ADVFG      A G++VPVLGGVFL PND+TPMS+ E Q+I W+GRTG G +A VDIILRSR+  N S  A+ VV   DPR ST+GEF W++P  AFT +E AS A F+DKF+LE+FDAVGGGLICRS D +L +D    +SDTSTLXXXXXXXXXXXXXXXXXXXVACPYYDKIVRRR+ND RPSLIDVDDTYIIDGEGQPAILALDSHVIPLAHAHFWP D  GS S+S     +VLRRA S  N GGXXXXXXX         NS SW R VL M
Sbjct:  581 TDLDVGQVNITLFNADVEVQTFVNTENTGTYRWTIADDVEQSRFYRLAVWDTATRICGISYEFAISGELSITVTEFEGYNEG-TVDISPLRRGDASSSQGGGQIYSCGGSVGVGWNFTGLLEEVNVRVCQEPASSGNLAGLEDEDLQNTGSPVTEDGEFFICLDPVSGDVLANSSFLNASLTATAA------TTCGVWGEGFYAKVTWVNSGD-ADVFGLSNDPDAGGVSVPVLGGVFLTPNDSTPMSIAESQVIKWEGRTGGGLEAEVDIILRSRA--NLSDDAYYVVAAGDPRTSTNGEFTWDNPSEAFTADELASPATFEDKFFLEVFDAVGGGLICRSTDISLAADYASDESDTSTLXXXXXXXXXXXXXXXXXXXVACPYYDKIVRRRQNDRRPSLIDVDDTYIIDGEGQPAILALDSHVIPLAHAHFWPIDVNGSLSASRNGPSYVLRRAGSG-NRGGXXXXXXXXXXXXXXXXNSSSWTRTVLAM 1061          
BLAST of mRNA_L-elsbetiae_contig1181.1564.1 vs. uniprot
Match: D7G0R6_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0R6_ECTSI)

HSP 1 Score: 337 bits (863), Expect = 4.560e-108
Identity = 185/309 (59.87%), Postives = 223/309 (72.17%), Query Frame = 0
Query:    4 STENLPSDMDIGTVNITLFNGDTVVRTFENNSNTGEFSWVIPSDLAEARTYRVAVWDTASRICGISSEFGISGELSITVTQFEGRNEGGTVDMSPLRLGENASSGGGREIYSCGGSVGIAWSHSGLLEEVDVRVCKEPNTSGTLAGLEDEDL-----------ELDSCLDPVSQSVPANSSFLNATLTTVEGDEAAKDALCAVYGDGFFARVSWAGDGSTADVFG------ASGITVPVLGGVFLKPNDTTPMSVLEPQLISWDGRTGVGADALVDIILRSRSRGNTSSGAFRVVVESDPRASTDGEFL 295
            S  +L +D+D+G VNITLFN D  V+TF N  NTG + W I  DL ++R YR+AVWDTA+RICGIS EF ISGELSITVT+FEG NEG TVD+SPLR G+ ASS GG +IYSCGGSVG+ W+ +GLLEEV+VRVC+EP +SGTLAGLEDEDL           E   CLDPVS  V ANSSFLNA+LT      +  D  C V+G+GF+A+V+W  D   ADVFG      A G++VPVLGGVFLKPND+TPMS+ E QLISW+G TGVG +A VDIILRS++  N S  A+ VV   + R STDG  +
Sbjct:  140 SASSLITDLDVGQVNITLFNADVEVQTFVNTDNTGTYRWTIADDLEQSRFYRLAVWDTATRICGISYEFAISGELSITVTEFEGYNEG-TVDISPLRRGDAASSEGGGQIYSCGGSVGVGWNFTGLLEEVNVRVCQEPASSGTLAGLEDEDLLNTGSPVTEDGEFFICLDPVSGDVLANSSFLNASLTATAATTS--DGTCGVWGEGFYAKVTWV-DSGDADVFGLSNDPDAGGVSVPVLGGVFLKPNDSTPMSIAESQLISWEGLTGVGENAQVDIILRSKA--NLSDDAYYVVAAGNRRNSTDGSLV 442          
BLAST of mRNA_L-elsbetiae_contig1181.1564.1 vs. uniprot
Match: D7G0R7_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G0R7_ECTSI)

HSP 1 Score: 166 bits (420), Expect = 1.710e-42
Identity = 124/187 (66.31%), Postives = 138/187 (73.80%), Query Frame = 0
Query:  293 EFLWEDPWTAFTEEERASEAVFQDKFYLELFDAVGGGLICRSGDFTLESDANPTDSDTSTLXXXXXXXXXXXXXXXXXXXVACPYYDKIVRRR-RNDLRPSLIDVDDTYIIDGEGQPAILALDSHVIPLAHAHFWPAD--GSASSSFTAAPFVLRRAAS-VRNIGGXXXXXXXSNSPSWARAVLTMG 475
            EF W++P  AFT +E AS A F+D+F+LE+FDAVGGGLICRS +F+LE+D    +SDTST XXXXXXXXXXXXXXXXXXX              RNDLRPSLIDVDDTYIIDGEGQPAILALDSHVIPLAHAHFWP D  GS ++S     +VLRRA S       XXXXXXX NS SW R VL MG
Sbjct:   11 EFSWDNPSEAFTPDELASAATFEDRFFLEVFDAVGGGLICRSPEFSLEADDASNESDTSTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRNDLRPSLIDVDDTYIIDGEGQPAILALDSHVIPLAHAHFWPIDVTGSLNASRNGPSYVLRRAGSGXXXXXXXXXXXXXXNSGSWTRTVLAMG 197          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1181.1564.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JA45_9PHAE4.500e-16964.43Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G0R6_ECTSI4.560e-10859.87Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
D7G0R7_ECTSI1.710e-4266.31Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePHOBIUSTRANSMEMBRANETransmembrane regioncoord: 353..378
NoneNo IPR availablePHOBIUSCYTOPLASMIC_DOMAINCytoplasmic domaincoord: 379..475
NoneNo IPR availablePHOBIUSNON_CYTOPLASMIC_DOMAINNon cytoplasmic domaincoord: 1..352
NoneNo IPR availableTMHMMTMhelixcoord: 356..378

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1181contigL-elsbetiae_contig1181:10960..24098 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1181.1564.1mRNA_L-elsbetiae_contig1181.1564.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig1181 10960..26191 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig1181.1564.1 ID=prot_L-elsbetiae_contig1181.1564.1|Name=mRNA_L-elsbetiae_contig1181.1564.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=475bp
MTTSTENLPSDMDIGTVNITLFNGDTVVRTFENNSNTGEFSWVIPSDLAE
ARTYRVAVWDTASRICGISSEFGISGELSITVTQFEGRNEGGTVDMSPLR
LGENASSGGGREIYSCGGSVGIAWSHSGLLEEVDVRVCKEPNTSGTLAGL
EDEDLELDSCLDPVSQSVPANSSFLNATLTTVEGDEAAKDALCAVYGDGF
FARVSWAGDGSTADVFGASGITVPVLGGVFLKPNDTTPMSVLEPQLISWD
GRTGVGADALVDIILRSRSRGNTSSGAFRVVVESDPRASTDGEFLWEDPW
TAFTEEERASEAVFQDKFYLELFDAVGGGLICRSGDFTLESDANPTDSDT
STLLLLLTPAALLLLCCCGVFFVACPYYDKIVRRRRNDLRPSLIDVDDTY
IIDGEGQPAILALDSHVIPLAHAHFWPADGSASSSFTAAPFVLRRAASVR
NIGGGGSGGGSSNSPSWARAVLTMG
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