mRNA_L-elsbetiae_contig11807.1561.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11807.1561.1
Unique NamemRNA_L-elsbetiae_contig11807.1561.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig11807.1561.1 vs. uniprot
Match: A0A6H5LLL6_9PHAE (RING-type domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LLL6_9PHAE)

HSP 1 Score: 420 bits (1080), Expect = 1.100e-136
Identity = 232/340 (68.24%), Postives = 252/340 (74.12%), Query Frame = 1 
Query:    1 IVDRGDRTEQAEFVEEVQAQNKLSSVTFADDYPVEEHSWVEFPVYGTKYEAIYISPNGALFVPPLQTVVPGGLSAVSPSTEAFFPVLKADWNPSDSRAASSVLVMIEEGQFSVLYEDVFLFKRSATATPSTFSTTVFPDGSLRYRYIRVGDTADWTVGVSGNSFVSPTIRNRHVRQSEFIQMGEDGLPVASVAASQVFPGTST-PPTP----SSAFNASDDADGEPASGGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTEVALCRAPTLACLGRACGKAGSEVSVLWEGFGCRAAASLNVSFACRIGGLEVPATSLRG 1005
            IVDR D  EQAEFV EV+AQNKLSSVTFADDYPVE H+W EFPVYGTKYE +YISPNGALFVPPLQTVVPGGLSAVSPSTEA+FPVLKADWNPSDSRAASSVLV+IEE QFSVLY+DVFLFKRSA+ATPSTFSTTVFPDGSLRYRY+R+GD ADWT GVSGNSFVSPTIRNRHVRQS+FIQM E+GLP A+ A  + F  T T PP+P    S+A N+SD   G+ +S                                                    TEV LCRAPTLACL RACGKAGSEV VLWEG GCRAAASLNV+F+CRIGGLEVPA  L G
Sbjct:   19 IVDRADPVEQAEFVAEVRAQNKLSSVTFADDYPVEFHNWREFPVYGTKYEDVYISPNGALFVPPLQTVVPGGLSAVSPSTEAYFPVLKADWNPSDSRAASSVLVVIEEDQFSVLYQDVFLFKRSASATPSTFSTTVFPDGSLRYRYMRIGDKADWTAGVSGNSFVSPTIRNRHVRQSQFIQMDENGLPSAA-APPEAFSATPTLPPSPGAPVSTASNSSDSTSGDDSS--------------------------EVQQWGEGEAVTIIANGDGAEEEDADTEVTLCRAPTLACLARACGKAGSEVPVLWEGVGCRAAASLNVTFSCRIGGLEVPAVGLGG 331
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BLAST of mRNA_L-elsbetiae_contig11807.1561.1 vs. uniprot
Match: D7FI05_ECTSI (RING-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FI05_ECTSI)

HSP 1 Score: 410 bits (1055), Expect = 1.850e-129
Identity = 230/345 (66.67%), Postives = 244/345 (70.72%), Query Frame = 1 
Query:    1 IVDRGDRTEQAEFVEEVQAQNKLSSVTFADDYPVEEHSWVEFPVYGTKYEAIYISPNGALFVPPLQTVVPGGLSAVSPSTEAFFPVLKADWNPSDSRAASSVLVMIEEGQFSVLYEDVFLFKRSATATPSTFSTTVFPDGSLRYRYIRVGDTADWTVGVSGNSFVSPTIRNRHVRQSEFIQMGEDGLPVASVAASQVFPGTSTPPTPSSAFNAS----------DDADGEPASGGPXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTEVALCRAPTLACLGRACGKAGSEVSVLWEGFGCRAAASLNVSFACRIGGLEVPATSLRG 1005
            IVDR D  EQAEFV EV+AQNKLSSVTFADDYPVE H+W EFPVYGTKYE +YISPNGALFVPPLQTVVPGGLSAVSPSTEA+FPVLKADWNPSDSRAASSVLVMIEE QFSVLY+DVFLFKRSA+ATPSTFSTTVFPDGSLRYRY+R+GD ADWT GVSGNSFVSPTIRNRHVRQS+FIQM E+GLP A+ A S+ F  T T                     DDA      GG                                                  TEV LCRAPTLACL RACGKAGSEV VLWEG GCRAAASLNV+F+CRIGGLEVPA SL G
Sbjct:  534 IVDRADPVEQAEFVAEVRAQNKLSSVTFADDYPVEFHNWREFPVYGTKYEDVYISPNGALFVPPLQTVVPGGLSAVSPSTEAYFPVLKADWNPSDSRAASSVLVMIEEDQFSVLYQDVFLFKRSASATPSTFSTTVFPDGSLRYRYMRIGDKADWTAGVSGNSFVSPTIRNRHVRQSQFIQMDENGLPSAA-APSEAFSATPTXXXXXXXXXXXXXXXXXXXXXDDASEVQGEGG-------------------------------GSAVTIIANGDGAEEEDGDTEVTLCRAPTLACLARACGKAGSEVPVLWEGVGCRAAASLNVTFSCRIGGLEVPAVSLEG 846
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11807.1561.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5LLL6_9PHAE1.100e-13668.24RING-type domain-containing protein n=1 Tax=Ectoca... [more]
D7FI05_ECTSI1.850e-12966.67RING-type domain-containing protein n=1 Tax=Ectoca... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11807contigL-elsbetiae_contig11807:2351..5116 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score415.6
Seed ortholog evalue2.2e-113
Seed eggNOG ortholog2880.D7FI05
KEGG koko:K19037
Hectar predicted targeting categoryother localisation
EggNOG free text desc.ubiquitin-protein transferase activity
EggNOG OGsKOG0800@1,KOG0800@2759
EC2.3.2.27
COG Functional cat.O
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko04121
Exons4
Model size1019
Cds size1017
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11807.1561.1prot_L-elsbetiae_contig11807.1561.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11807 2351..5116 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815384.3578856-CDS-L-elsbetiae_contig11807:2350..28581622815384.3578856-CDS-L-elsbetiae_contig11807:2350..2858Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11807 2351..2858 -
1691682871.7459466-CDS-L-elsbetiae_contig11807:2350..28581691682871.7459466-CDS-L-elsbetiae_contig11807:2350..2858Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11807 2351..2858 -
1622815384.3693311-CDS-L-elsbetiae_contig11807:3030..31701622815384.3693311-CDS-L-elsbetiae_contig11807:3030..3170Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11807 3031..3170 -
1691682871.7616448-CDS-L-elsbetiae_contig11807:3030..31701691682871.7616448-CDS-L-elsbetiae_contig11807:3030..3170Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11807 3031..3170 -
1622815384.378451-CDS-L-elsbetiae_contig11807:3833..40521622815384.378451-CDS-L-elsbetiae_contig11807:3833..4052Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11807 3834..4052 -
1691682871.770846-CDS-L-elsbetiae_contig11807:3833..40521691682871.770846-CDS-L-elsbetiae_contig11807:3833..4052Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11807 3834..4052 -
1622815384.3872647-CDS-L-elsbetiae_contig11807:4966..51161622815384.3872647-CDS-L-elsbetiae_contig11807:4966..5116Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11807 4967..5116 -
1691682871.7810943-CDS-L-elsbetiae_contig11807:4966..51161691682871.7810943-CDS-L-elsbetiae_contig11807:4966..5116Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11807 4967..5116 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11807.1561.1

>prot_L-elsbetiae_contig11807.1561.1 ID=prot_L-elsbetiae_contig11807.1561.1|Name=mRNA_L-elsbetiae_contig11807.1561.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=339bp
IVDRGDRTEQAEFVEEVQAQNKLSSVTFADDYPVEEHSWVEFPVYGTKYE
AIYISPNGALFVPPLQTVVPGGLSAVSPSTEAFFPVLKADWNPSDSRAAS
SVLVMIEEGQFSVLYEDVFLFKRSATATPSTFSTTVFPDGSLRYRYIRVG
DTADWTVGVSGNSFVSPTIRNRHVRQSEFIQMGEDGLPVASVAASQVFPG
TSTPPTPSSAFNASDDADGEPASGGPGGGQGGGSGDAVTTTTTAAASDGD
DDDREEEEEEQEGEGVDGGGGGGGGTEVALCRAPTLACLGRACGKAGSEV
SVLWEGFGCRAAASLNVSFACRIGGLEVPATSLRGPSSS
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mRNA from alignment at L-elsbetiae_contig11807:2351..5116-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11807.1561.1 ID=mRNA_L-elsbetiae_contig11807.1561.1|Name=mRNA_L-elsbetiae_contig11807.1561.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2766bp|location=Sequence derived from alignment at L-elsbetiae_contig11807:2351..5116- (Laminarionema elsbetiae ELsaHSoW15)
ATTGTCGACCGCGGGGACCGGACAGAGCAGGCGGAGTTTGTGGAGGAGGT
GCAGGCGCAGAACAAGCTGTCATCCGTGACCTTCGCCGACGACTACCCGG
TGGAGGAGCATAGCTGGGTCGAGTTTCCGGTGTACGGGACCAAGTACGAG
GTACGTCACGGAGCCCCCCTGCAACGAGGGACCGCCTTCGCGAAGAAACT
GACTTTTTTATCTAGGAAATCGAGGCAGGGGCTTCGTAACCCTAGTAGCC
CCAACCCTAACCCGAAACCCCCCGACCGACCACCTTTCTTTCCGATTCCT
TTGCTTTATCTCATATGCTATGATGTAGCTGAAGACAAACTAACGAAAGC
TACTACCTGCTGCGCAACGATCAACTACTTTACCCCCCATCGACGCCGCG
CTGTGTCTTGAGCGTGCACCAAACTCTTCGCAGAAACTATGTAGGTATGT
ATTACATGTGTATTTTACCTTTTAGAGTTCATCTACTTTTGTGTCGGCGC
AGATCACCTGCGCTGGTCAGCTGTGTACATACATACACACGCGTGCCAAA
AATGTGCGTTACCGATGACTACTTCACTATTATGGCCTTGATACATAACT
AACTCCCCGAATGTCTCCCCCGACCTCCCAGTCATTTGCTCCTGCACCGA
CCCACCCACCCACCCACGCAGTGTAGCCTTCGCAGGCTTTACTGTAAGAA
TTTATATGAGATAGATAAAAGTATGGAAAAGGCTAATGGGGGCTCAGTTT
GGGGTGAGGGGTAGGGGTCGGGTTACGGAACCCCTGTCCATTATTTCCTA
TGTGTGTACATAGCGACAGAAATCCTTCCGAAGGCGATCCCGCACGCACG
CATGCCTACGGTTTTCGATCTTCGCCCGCGAAGAGACGTTTTTTTTCGAT
CCCAACGACGAGCGCCCCGGTCCCCCTTTGGTCTGCGTATTGTTCACTTG
GCCGTTTTTTTATTGTCCATCCGTTTCATTTTGTTTCCCCTTCAATTAGT
CCGTCCTCTGCCCCCCCCCCCCTCTGCGCGTGTGGTGGCGGCCGCCGTCG
CGGGGGGAGCACAGGCCATCTACATCAGCCCCAACGGGGCCCTGTTTGTG
CCTCCGCTCCAGACCGTCGTGCCGGGGGGTCTGTCGGCGGTTTCACCCTC
GACAGAGGCGTTTTTTCCCGTGCTGAAGGCGGACTGGAACCCTTCCGACA
GCCGCGCGGCCTCCTCGGTTCTCGTGATGATCGAGGAGGGCCAGTTCTCG
GTGCTCTACGAGGACGTTTTCCTGTTCAAGAGGGTGAGCGAGAGAGAGAG
AGAGAGACGGAGGGAAGACGGCGAGAAAATATGGGGTGGCGTTTGTTTTT
TGGGCTATTTTTTCCTCGCAGCGTCCCTGTTTCGGTGTTCATATTGCGGG
TGGGCGGGCTCTAGAGGCAGCAGACCACGATCCGGGATATGGGTAGATAT
ATTTGTATGTTTGTACACGTGTACTTCCGTTAGATCTGTCGAAAACAGTC
TTTTCGCCCTACGAACTCTAAACAGGCACGGGTAGGATCTGCTCAGATCT
ATCACAGTACGACATCTGCGACGACACAGCCAACCAAGGGACGGAAGACG
AAACGAGAAAAACACCAGCAGTGCAGTATCATCTAGCAAGACCAAAATAA
GACGTCACATTTGCCACAATCAATTGAGCAACCGTGCATACGTATGTGCC
AGGTCTAGTCTATGGTAGATGCCGAGGTGCGAGTCGGGCGTGTCCCGATG
GCGTTGTTGCGGTGCTGCTCAGCGTGTGTTGGAACCCTTGAACTCTTAGT
TTATATTGATTTCCGAACGCTCTCGAGGTCTCGACTCGCCCCCGCTCCCC
GCTCCCCGCTCCCCGCTCCCCGCTTCCCGCTCCCGCGCCTCGCCCTTCGT
CTCTTTGTTTCTTCCTTTGTTCCTCCCCTCCGCCGGGCTGAAACAGTCTG
CGACGGCGACGCCTTCGACGTTCTCGACGACGGTGTTCCCGGACGGATCC
CTGAGGTACCGGTATATCCGCGTCGGAGACACAGCCGACTGGACGGTGGG
CGTCAGCGGGAACTCTTTCGTCTCGCCAACTATTCGGTGAGGCTAAATTC
TAGAGTAGACTAGATGTTGACGTATTTTTTTTTCTTCGCAGACAAGCGAA
CCACGAAAGTGCTCACTCTCTCCCTCCCCGTGCCCCTTCCCCCCCCCTGA
ACCCTCGTCCCCCTCGGCGCGCGCCCCAAAAACTCACGCCGTCTGTTACT
ACTCCTAGAAATCGCCACGTGCGACAGTCGGAGTTCATTCAGATGGGTGA
GGACGGTCTGCCGGTAGCCTCCGTTGCCGCGTCCCAGGTGTTTCCCGGCA
CGTCGACGCCGCCCACCCCTTCCTCGGCCTTCAACGCAAGCGATGATGCC
GACGGCGAACCGGCGAGTGGCGGCCCCGGCGGCGGGCAAGGAGGGGGCTC
CGGCGATGCAGTCACCACCACCACCACCGCCGCCGCGAGCGATGGCGACG
ACGATGACCGCGAGGAAGAGGAGGAAGAGCAAGAAGGAGAAGGTGTTGAC
GGCGGCGGCGGCGGCGGCGGCGGCACTGAGGTCGCCCTGTGCCGCGCGCC
GACCCTGGCGTGCCTGGGGCGCGCGTGCGGCAAGGCGGGGAGCGAGGTCT
CCGTCCTGTGGGAAGGGTTCGGCTGCCGGGCGGCCGCCTCCCTGAACGTG
AGCTTCGCATGCCGCATCGGCGGCCTCGAGGTGCCGGCCACCAGCCTTCG
GGGGCCCTCCTCCAGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11807:2351..5116-

>mRNA_L-elsbetiae_contig11807.1561.1 ID=mRNA_L-elsbetiae_contig11807.1561.1|Name=mRNA_L-elsbetiae_contig11807.1561.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2034bp|location=Sequence derived from alignment at L-elsbetiae_contig11807:2351..5116- (Laminarionema elsbetiae ELsaHSoW15)
ATTGTCGACCGCGGGGACCGGACAGAGCAGGCGGAGTTTGTGGAGGAGGT
GCAGGCGCAGAACAAGCTGTCATCCGTGACCTTCGCCGACGACTACCCGG
TGGAGGAGCATAGCTGGGTCGAGTTTCCGGTGTACGGGACCAAGTACGAG
ATTGTCGACCGCGGGGACCGGACAGAGCAGGCGGAGTTTGTGGAGGAGGT
GCAGGCGCAGAACAAGCTGTCATCCGTGACCTTCGCCGACGACTACCCGG
TGGAGGAGCATAGCTGGGTCGAGTTTCCGGTGTACGGGACCAAGTACGAG
GCCATCTACATCAGCCCCAACGGGGCCCTGTTTGTGCCTCCGCTCCAGAC
CGTCGTGCCGGGGGGTCTGTCGGCGGTTTCACCCTCGACAGAGGCGTTTT
TTCCCGTGCTGAAGGCGGACTGGAACCCTTCCGACAGCCGCGCGGCCTCC
TCGGTTCTCGTGATGATCGAGGAGGGCCAGTTCTCGGTGCTCTACGAGGA
CGTTTTCCTGTTCAAGAGGGCCATCTACATCAGCCCCAACGGGGCCCTGT
TTGTGCCTCCGCTCCAGACCGTCGTGCCGGGGGGTCTGTCGGCGGTTTCA
CCCTCGACAGAGGCGTTTTTTCCCGTGCTGAAGGCGGACTGGAACCCTTC
CGACAGCCGCGCGGCCTCCTCGGTTCTCGTGATGATCGAGGAGGGCCAGT
TCTCGGTGCTCTACGAGGACGTTTTCCTGTTCAAGAGGTCTGCGACGGCG
ACGCCTTCGACGTTCTCGACGACGGTGTTCCCGGACGGATCCCTGAGGTA
CCGGTATATCCGCGTCGGAGACACAGCCGACTGGACGGTGGGCGTCAGCG
GGAACTCTTTCGTCTCGCCAACTATTCGTCTGCGACGGCGACGCCTTCGA
CGTTCTCGACGACGGTGTTCCCGGACGGATCCCTGAGGTACCGGTATATC
CGCGTCGGAGACACAGCCGACTGGACGGTGGGCGTCAGCGGGAACTCTTT
CGTCTCGCCAACTATTCGAAATCGCCACGTGCGACAGTCGGAGTTCATTC
AGATGGGTGAGGACGGTCTGCCGGTAGCCTCCGTTGCCGCGTCCCAGGTG
TTTCCCGGCACGTCGACGCCGCCCACCCCTTCCTCGGCCTTCAACGCAAG
CGATGATGCCGACGGCGAACCGGCGAGTGGCGGCCCCGGCGGCGGGCAAG
GAGGGGGCTCCGGCGATGCAGTCACCACCACCACCACCGCCGCCGCGAGC
GATGGCGACGACGATGACCGCGAGGAAGAGGAGGAAGAGCAAGAAGGAGA
AGGTGTTGACGGCGGCGGCGGCGGCGGCGGCGGCACTGAGGTCGCCCTGT
GCCGCGCGCCGACCCTGGCGTGCCTGGGGCGCGCGTGCGGCAAGGCGGGG
AGCGAGGTCTCCGTCCTGTGGGAAGGGTTCGGCTGCCGGGCGGCCGCCTC
CCTGAACGTGAGCTTCGCATGCCGCATCGGCGGCCTCGAGGTGCCGGCCA
CCAGCCTTCGGGGGCCCTCCTCCAGCAAATCGCCACGTGCGACAGTCGGA
GTTCATTCAGATGGGTGAGGACGGTCTGCCGGTAGCCTCCGTTGCCGCGT
CCCAGGTGTTTCCCGGCACGTCGACGCCGCCCACCCCTTCCTCGGCCTTC
AACGCAAGCGATGATGCCGACGGCGAACCGGCGAGTGGCGGCCCCGGCGG
CGGGCAAGGAGGGGGCTCCGGCGATGCAGTCACCACCACCACCACCGCCG
CCGCGAGCGATGGCGACGACGATGACCGCGAGGAAGAGGAGGAAGAGCAA
GAAGGAGAAGGTGTTGACGGCGGCGGCGGCGGCGGCGGCGGCACTGAGGT
CGCCCTGTGCCGCGCGCCGACCCTGGCGTGCCTGGGGCGCGCGTGCGGCA
AGGCGGGGAGCGAGGTCTCCGTCCTGTGGGAAGGGTTCGGCTGCCGGGCG
GCCGCCTCCCTGAACGTGAGCTTCGCATGCCGCATCGGCGGCCTCGAGGT
GCCGGCCACCAGCCTTCGGGGGCCCTCCTCCAGC
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