mRNA_L-elsbetiae_contig11797.1546.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11797.1546.1
Unique NamemRNA_L-elsbetiae_contig11797.1546.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig11797.1546.1 vs. uniprot
Match: D7FZN1_ECTSI (DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FZN1_ECTSI)

HSP 1 Score: 431 bits (1107), Expect = 8.100e-144
Identity = 228/268 (85.07%), Postives = 240/268 (89.55%), Query Frame = 1
Query:    1 QEGVVAKLLAGESCAGVFPTGAGKSICYQLPGTLMARQGLGLTLVVSPLIALMKDQTDALNAAGVPCAKLDSTLEAHEVFEIYEQIRAGSVALLYVSPERFNNERFVNTLKGIKVALFVVDEAHCISEWGHNFRPDYLRLADFAKAAKANARLALTATATPKVTVDIANRLDIPSSNVRRTPFYRPMLSLGAVRAPEDPAERTQMLVGMLLAXXXXXXXXXXXXGLAAGAAVVYVTLQRTAVEVAQALVAAGIDARPYHAGLPALERE 804
            +E VVAKLLAGESCAGVFPTGAGKSICYQLPGTLMARQGLGLTLVVSPLIALMKDQTDAL AAGVPCAKLDSTLEAHEV++IYEQIRAGSVALLYVSPERFNNERFV TLKGIKVALFVVDEAHCISEWGHNFRPDYLRLADFAKAA+ANARLALTATATPKV VDIANRLDIP SNV RTPFYRPML+LGAVRAP+D  ER ++L  +LL             G  +GAAVVYVTLQ+TAVEVAQAL AAGIDARPYHAGLP L+RE
Sbjct:   88 EEEVVAKLLAGESCAGVFPTGAGKSICYQLPGTLMARQGLGLTLVVSPLIALMKDQTDALIAAGVPCAKLDSTLEAHEVYDIYEQIRAGSVALLYVSPERFNNERFVRTLKGIKVALFVVDEAHCISEWGHNFRPDYLRLADFAKAARANARLALTATATPKVAVDIANRLDIPPSNVNRTPFYRPMLTLGAVRAPDDQEERARLLADILLRGEHHQQGRGTAAG--SGAAVVYVTLQKTAVEVAQALAAAGIDARPYHAGLPPLQRE 353          
BLAST of mRNA_L-elsbetiae_contig11797.1546.1 vs. uniprot
Match: A0A6H5JUW0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JUW0_9PHAE)

HSP 1 Score: 357 bits (915), Expect = 5.770e-115
Identity = 206/327 (63.00%), Postives = 220/327 (67.28%), Query Frame = 1
Query:   52 FPTGAGKSICYQLPGTLMARQGLGLTLVVSPLIALMKDQT-------------------------------------------DALNAAGVPCAKLDSTLEAHEVFEIYEQIRAGSVALLYVSPERFNNERFVNTLKGIKVALFVVDEAHCISE---------------------------------WGHNFRPDYLRLADFAKAAKANARLALTATATPKVTVDIANRLDIPSSNVRRTPFYRPMLSLGAVRAPEDPAERTQMLVGMLLAXXXXXXXXXXXXGLAAGAAVVYVTLQRTAVEVAQALVAAGIDARPYHAGLPALERE 804
            FPTGAGKSICYQLPGTLMARQGLGLTLVVSPLIALMKDQ                                            D L  AGVPCAKLDSTLEAHEV++IYEQIRAGSVALLYVSPERFNNERFV TL+G+KVALFVVDEAHCISE                                 WGHNFRPDYLRLADFAKAA+ANARLALTA ATP+V VDIANRLDIP SNV RTPFYRPML+LGAVRAP+D  ER ++L  +LL             G  +GAAVVYVTLQ+TAVEVAQAL AAGIDARPYHAGLP L+RE
Sbjct:   39 FPTGAGKSICYQLPGTLMARQGLGLTLVVSPLIALMKDQVWYMLLNHNLFSLLSARQDIALCRGQLTVLVLLWMGLGTIAGVKDKLGPAGVPCAKLDSTLEAHEVYDIYEQIRAGSVALLYVSPERFNNERFVRTLQGVKVALFVVDEAHCISEGRVCCGAQRQMPLPVEAKRTSTEPVLHLLVSPQWGHNFRPDYLRLADFAKAARANARLALTAAATPQVAVDIANRLDIPPSNVNRTPFYRPMLTLGAVRAPDDQEERARLLADILLRGEHQQQGSGTAAG--SGAAVVYVTLQKTAVEVAQALAAAGIDARPYHAGLPPLQRE 363          
BLAST of mRNA_L-elsbetiae_contig11797.1546.1 vs. uniprot
Match: A0A835Z8G9_9STRA (DEAD box helicase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z8G9_9STRA)

HSP 1 Score: 262 bits (669), Expect = 2.880e-78
Identity = 157/304 (51.64%), Postives = 182/304 (59.87%), Query Frame = 1
Query:    1 QEGVVAKLLAGESCAGVFPTGAGKSICYQLPGTLMARQGLGLTLVVSPLIALMKDQTDALNAAGVPCAKLDSTLEAHEVFEIYEQIRAGSVALLYVSPERFNNERFVNTLKGI------------------------------------KVALFVVDEAHCISEWGHNFRPDYLRLADFAKAAKANARLALTATATPKVTVDIANRLDIPSSNVRRTPFYRPMLSLGAVRAPEDPAERTQMLVGMLLAXXXXXXXXXXXXGLAAGAAVVYVTLQRTAVEVAQALVAAGIDARPYHAGLPALERE 804
            QE VV  LL   S A + PTGAGKS+CYQLPG ++AR G G T+VVSPLIALMKDQ  AL A G+PCA+LDS+L+A    + Y+ +R G   LLYVSPERFNNERF +  KG                                     +VALFVVDEAHCISEWGHNFRPDYLRLA FA+AA A A LALTATATP+V  D+  RL I   +V RTP +R  L+L A RAP+   ER   L   L A              A GA +VY  LQ+TA + A  L AAGI AR YHAGL A ER+
Sbjct:   68 QEEVVRLLLQQRSAAAILPTGAGKSLCYQLPGLVLARAGRGTTVVVSPLIALMKDQAQALAARGLPCARLDSSLDAAVARDAYDMVRRGRAGLLYVSPERFNNERFASAFKGALVHFARWAQLRTVERRGAAARARISSEAGLGALSKARVALFVVDEAHCISEWGHNFRPDYLRLAAFARAAGAAATLALTATATPRVAADMCARLAIAQHDVVRTPLHRAELALRAARAPDALEERVAALAARLRAR-------------APGATIVYAMLQQTATDAAAMLTAAGIPARAYHAGLRAAERD 358          
BLAST of mRNA_L-elsbetiae_contig11797.1546.1 vs. uniprot
Match: UPI000AB9CF76 (RecQ family ATP-dependent DNA helicase n=3 Tax=Candidatus Thiosymbion oneisti TaxID=589554 RepID=UPI000AB9CF76)

HSP 1 Score: 254 bits (649), Expect = 8.860e-77
Identity = 147/262 (56.11%), Postives = 174/262 (66.41%), Query Frame = 1
Query:    1 QEGVVAKLLAGESCAGVFPTGAGKSICYQLPGTLMARQGLGLTLVVSPLIALMKDQTDALNAAGVPCAKLDSTLEAHEVFEIYEQIRAGSVALLYVSPERFNNERFVNTLKGIKVALFVVDEAHCISEWGHNFRPDYLRLADFAKAAKANARLALTATATPKVTVDIANRLDIPSSNVRRTPFYRPMLSLGAVRAPEDPAERTQMLVGMLLAXXXXXXXXXXXXGLAAGAAVVYVTLQRTAVEVAQALVAAGIDARPYHAGL 786
            QE VVA L+AG S A VFPTG GKS+CYQLP  L+     GLTLVVSPLIALMKDQ DAL   G+  A+LDSTL+A     + EQ+R G++ LLYV+PERFNNERF   +  ++++LF VDEAHCISEWGHNFRPDYL+LA FA+A  A   LALTATAT +V  DI + L I +    RT FYRP LSL     P   AER   L+  L A                G  +VYVTLQRTA E+A+ LVAAG +AR YHAG+
Sbjct:   22 QEAVVAHLMAGHSAAAVFPTGGGKSLCYQLPALLLP----GLTLVVSPLIALMKDQIDALTRRGIAAARLDSTLDAAAHRTVMEQVRKGTLRLLYVAPERFNNERFREAITPVRISLFAVDEAHCISEWGHNFRPDYLKLAGFARACGAERVLALTATATERVLADICDGLAIDAERAVRTGFYRPNLSL--TMTPVSAAERDGSLLTALRANPP-------------GPTIVYVTLQRTAEELAERLVAAGCEARAYHAGM 264          
BLAST of mRNA_L-elsbetiae_contig11797.1546.1 vs. uniprot
Match: U2EN26_9GAMM (ATP-dependent DNA helicase RecQ protein n=2 Tax=Salinisphaera TaxID=180541 RepID=U2EN26_9GAMM)

HSP 1 Score: 246 bits (627), Expect = 1.240e-73
Identity = 144/267 (53.93%), Postives = 176/267 (65.92%), Query Frame = 1
Query:    1 QEGVVAKLLAGESCAGVFPTGAGKSICYQLPGTLMARQGLGLTLVVSPLIALMKDQTDALNAAGVPCAKLDSTLEAHEVFEIYEQIRAGSVALLYVSPERFNNERFVNTLKGIKVALFVVDEAHCISEWGHNFRPDYLRLADFAKAAKANARLALTATATPKVTVDIANRLDIPSSNVRRTPFYRPMLSLGAVRAPEDPAERTQMLVGMLLAXXXXXXXXXXXXGLAAGAAVVYVTLQRTAVEVAQALVAAGIDARPYHAGLPALER 801
            Q  V+  LLAG S A VFPTG GKS+CYQLP   +     G+TLVVSPLIALMKDQ DAL+A G+   +LDS+L+A     + +++R+G + LLYV+PERFNNERF  TL  ++V+LF VDEAHCISEWGHNFRPDYL+L  FAKAAKA   LALTATATP V  DI   LDI +    RT FYRP L+L  + AP    +R   L+  L                +AG  +VYVTLQRTA +VA+ L  AG  AR YHAG+ + +R
Sbjct:   22 QREVIEHLLAGRSAAAVFPTGGGKSLCYQLPALALP----GITLVVSPLIALMKDQIDALSARGIAAQRLDSSLDAEGYRAVMDRLRSGELRLLYVAPERFNNERFRQTLSQLRVSLFAVDEAHCISEWGHNFRPDYLKLVGFAKAAKAERLLALTATATPAVLDDICQVLDIGADCAVRTAFYRPNLTL--LFAPTTVEQRDHDLLARL-------------NERSAGPTIVYVTLQRTAEQVAKQLADAGHPARAYHAGMDSEKR 269          
BLAST of mRNA_L-elsbetiae_contig11797.1546.1 vs. uniprot
Match: A0A450TLC6_9GAMM (ATP-dependent DNA helicase, RecQ-like (Fragment) n=2 Tax=Candidatus Kentron sp. DK TaxID=2126562 RepID=A0A450TLC6_9GAMM)

HSP 1 Score: 246 bits (627), Expect = 2.570e-73
Identity = 141/262 (53.82%), Postives = 172/262 (65.65%), Query Frame = 1
Query:    1 QEGVVAKLLAGESCAGVFPTGAGKSICYQLPGTLMARQGLGLTLVVSPLIALMKDQTDALNAAGVPCAKLDSTLEAHEVFEIYEQIRAGSVALLYVSPERFNNERFVNTLKGIKVALFVVDEAHCISEWGHNFRPDYLRLADFAKAAKANARLALTATATPKVTVDIANRLDIPSSNVRRTPFYRPMLSLGAVRAPEDPAERTQMLVGMLLAXXXXXXXXXXXXGLAAGAAVVYVTLQRTAVEVAQALVAAGIDARPYHAGL 786
            QE V+  LL GES A VFPTG GKS+CYQLP  L+     G+TLVVSPLIALMKDQ DAL A G+   +LDS+L   E  ++  Q+R G++ LLYV+PERFNNERF  +L+ +++ALF VDEAHCISEWGHNFRPDYL+LA FA+   A   LALTATATP V  DI    DI      RT FYRP L+L  +    +  ER ++L+  +                  G A+VYVTLQ+TA EVA+ L AAG+ AR YHAGL
Sbjct:   50 QEAVIRHLLDGESAAAVFPTGGGKSLCYQLPALLLP----GVTLVVSPLIALMKDQIDALTARGIHARRLDSSLTGEEYRDVMVQLRGGTLPLLYVAPERFNNERFRESLRNVRIALFAVDEAHCISEWGHNFRPDYLKLAGFAREFGAERILALTATATPPVLDDICRLFDIKPHCAIRTGFYRPNLTLDTLAV--NAGERDEILLESIREQPK-------------GPAIVYVTLQKTAEEVAKRLAAAGLPARAYHAGL 292          
BLAST of mRNA_L-elsbetiae_contig11797.1546.1 vs. uniprot
Match: A0A7W0STA9_9ACTN (ATP-dependent DNA helicase RecQ (Fragment) n=1 Tax=Actinomycetia bacterium TaxID=1883427 RepID=A0A7W0STA9_9ACTN)

HSP 1 Score: 241 bits (615), Expect = 2.650e-73
Identity = 138/267 (51.69%), Postives = 176/267 (65.92%), Query Frame = 1
Query:    1 QEGVVAKLLAGESCAGVFPTGAGKSICYQLPGTLMARQGLGLTLVVSPLIALMKDQTDALNAAGVPCAKLDSTLEAHEVFEIYEQIRAGSVALLYVSPERFNNERFVNTLKGIKVALFVVDEAHCISEWGHNFRPDYLRLADFAKAAKANARLALTATATPKVTVDIANRLDIPSSNVRRTPFYRPMLSLGAVRAPEDPAERTQMLVGMLLAXXXXXXXXXXXXGLAAGAAVVYVTLQRTAVEVAQALVAAGIDARPYHAGLPALER 801
            QE V+  LLAG S   VFPTGAGKS+CYQLP  ++     G+T+VVSPLIALMKDQ D L  +G+   +LDS+L A E  +I+E++ AG++ LLYV+PERFNNERF+  L   +++LF VDEAHCISEWGHNFRPDYL+LA+ A+  +A   LALTATATP V  DI +   I   +   T FYRP L+L  +  P    ER ++LV  L                  G+ +VYVTLQRT++ VA+ LV AG+ ARPYHAG+   ER
Sbjct:   28 QERVIEALLAGRSALAVFPTGAGKSLCYQLPALVLE----GVTIVVSPLIALMKDQIDFLQRSGIEAERLDSSLGAAEQRQIFERLHAGALELLYVAPERFNNERFLAQLARTRISLFAVDEAHCISEWGHNFRPDYLKLAERARDLRAERVLALTATATPAVVADIRSGFGIEEEDAVVTGFYRPNLTL--LMTPVASGERDRLLVERLRERPP-------------GSTIVYVTLQRTSLRVAELLVGAGLPARPYHAGIGTEER 275          
BLAST of mRNA_L-elsbetiae_contig11797.1546.1 vs. uniprot
Match: A0A3D2Z062_9BACT (RecQ family ATP-dependent DNA helicase n=1 Tax=Candidatus Latescibacteria bacterium TaxID=2053570 RepID=A0A3D2Z062_9BACT)

HSP 1 Score: 243 bits (619), Expect = 1.790e-72
Identity = 142/267 (53.18%), Postives = 173/267 (64.79%), Query Frame = 1
Query:    1 QEGVVAKLLAGESCAGVFPTGAGKSICYQLPGTLMARQGLGLTLVVSPLIALMKDQTDALNAAGVPCAKLDSTLEAHEVFEIYEQIRAGSVALLYVSPERFNNERFVNTLKGIKVALFVVDEAHCISEWGHNFRPDYLRLADFAKAAKANARLALTATATPKVTVDIANRLDIPSSNVRRTPFYRPMLSLGAVRAPEDPAERTQMLVGMLLAXXXXXXXXXXXXGLAAGAAVVYVTLQRTAVEVAQALVAAGIDARPYHAGLPALER 801
            Q  VV +LLAG S A VFPTG GKS+CYQLP  ++     GLTLVVSPLIALMKDQ DAL   G+  A+LDS+L+  +   + + IR+G + LLYV+PERFNNERF   ++GI ++LF VDEAHCISEWGHNFRPDYL+LA FA+  +A   LALTATATP+V  DI    DI   +  RT FYRP L L +   P   AER   L+ +L                  G  +VYVTLQRTA +VAQ L  +G+ AR YHAG+   ER
Sbjct:   22 QADVVERLLAGHSTAAVFPTGGGKSLCYQLPSLMLP----GLTLVVSPLIALMKDQIDALQRRGITAARLDSSLDKDQYRSVMDGIRSGQLRLLYVAPERFNNERFRQAIEGIAISLFAVDEAHCISEWGHNFRPDYLKLAGFARQFQAERILALTATATPRVLDDICAGFDIHPEHAVRTGFYRPNLLLRST--PVRVAERDGALLDVLQQQPP-------------GPTIVYVTLQRTAEQVAQRLEQSGLSARAYHAGMKDEER 269          
BLAST of mRNA_L-elsbetiae_contig11797.1546.1 vs. uniprot
Match: A0A517Y9U5_9BACT (ATP-dependent DNA helicase RecQ n=1 Tax=Anatilimnocola aggregata TaxID=2528021 RepID=A0A517Y9U5_9BACT)

HSP 1 Score: 242 bits (618), Expect = 2.180e-72
Identity = 142/269 (52.79%), Postives = 174/269 (64.68%), Query Frame = 1
Query:    1 QEGVVAKLLAGESCAGVFPTGAGKSICYQLPGTLMARQGLGLTLVVSPLIALMKDQTDALNAAGVPCAKLDSTLEAHEVFEIYEQIRAGSVALLYVSPERFNNERFVNTLKGIKVALFVVDEAHCISEWGHNFRPDYLRLADFAKAAKANARLALTATATPKVTVDIANRLDIPSSNVRRTPFYRPMLSLGA--VRAPEDPAERTQMLVGMLLAXXXXXXXXXXXXGLAAGAAVVYVTLQRTAVEVAQALVAAGIDARPYHAGLPALER 801
            Q  V+ +LLAG S A VFPTG GKS+CYQLP  L+     GLTLVVSPLIALMKDQ DAL+  G+  A++DSTL A E   + ++IR+G + LLYV+PERFNNERF   ++ + V+LF VDEAHCISEWGHNFRPDYL+L  FA   +A   LALTATATP+V  DI     I      RT F+RP L+L A  V +P     R  +L+  L A                GA++VYVTLQ+TA +VA+ L AAG  A+ YHAGL   ER
Sbjct:   20 QHAVIEQLLAGNSAAAVFPTGGGKSLCYQLPALLLP----GLTLVVSPLIALMKDQIDALDRRGIAAARIDSTLAAGETAAVMQRIRSGEIKLLYVAPERFNNERFREAIERMHVSLFAVDEAHCISEWGHNFRPDYLKLVRFANRCRAERLLALTATATPEVLRDICREFKIEPQAAIRTGFFRPNLALQASTVSSPN----RDALLIEKLHARPP-------------GASIVYVTLQKTAEQVAERLAAAGFAAKAYHAGLETEER 267          
BLAST of mRNA_L-elsbetiae_contig11797.1546.1 vs. uniprot
Match: A0A2S9Y7M8_9DELT (ATP-dependent DNA helicase RecQ n=1 Tax=Enhygromyxa salina TaxID=215803 RepID=A0A2S9Y7M8_9DELT)

HSP 1 Score: 241 bits (614), Expect = 1.050e-71
Identity = 145/267 (54.31%), Postives = 168/267 (62.92%), Query Frame = 1
Query:    1 QEGVVAKLLAGESCAGVFPTGAGKSICYQLPGTLMARQGLGLTLVVSPLIALMKDQTDALNAAGVPCAKLDSTLEAHEVFEIYEQIRAGSVALLYVSPERFNNERFVNTLKGIKVALFVVDEAHCISEWGHNFRPDYLRLADFAKAAKANARLALTATATPKVTVDIANRLDIPSSNVRRTPFYRPMLSLGAVRAPEDPAERTQMLVGMLLAXXXXXXXXXXXXGLAAGAAVVYVTLQRTAVEVAQALVAAGIDARPYHAGLPALER 801
            Q  V+  LLAG S A VF TGAGKS+CYQLP TL+     GLTLVVSPLIALMKDQ  AL+A G+    LD TL       + +++R G+  LLYV+PERFNNERF  TL+ ++V+LF VDEAHCISEWGHNFRPDYL+LA FA+   A   LALTATAT  V  DI   L+I      RTPFYR  L+L  V  P    ER   LV                     G A+VYVTLQRTA EVA+ L  AGIDA+PYHAG+ A  R
Sbjct:   24 QREVIEHLLAGRSSAAVFATGAGKSLCYQLPATLLP----GLTLVVSPLIALMKDQIGALSARGIVAHNLDFTLSFDAYKAVMDEVRDGTARLLYVAPERFNNERFRQTLQDVRVSLFAVDEAHCISEWGHNFRPDYLKLAMFARDLGAERILALTATATEPVLDDICRSLNIERGCAVRTPFYRANLTL--VTTPVSAVERDAALVARFRDRPR-------------GPAIVYVTLQRTAEEVAETLARAGIDAKPYHAGMAAEAR 271          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11797.1546.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FZN1_ECTSI8.100e-14485.07DNA helicase n=1 Tax=Ectocarpus siliculosus TaxID=... [more]
A0A6H5JUW0_9PHAE5.770e-11563.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z8G9_9STRA2.880e-7851.64DEAD box helicase n=1 Tax=Tribonema minus TaxID=30... [more]
UPI000AB9CF768.860e-7756.11RecQ family ATP-dependent DNA helicase n=3 Tax=Can... [more]
U2EN26_9GAMM1.240e-7353.93ATP-dependent DNA helicase RecQ protein n=2 Tax=Sa... [more]
A0A450TLC6_9GAMM2.570e-7353.82ATP-dependent DNA helicase, RecQ-like (Fragment) n... [more]
A0A7W0STA9_9ACTN2.650e-7351.69ATP-dependent DNA helicase RecQ (Fragment) n=1 Tax... [more]
A0A3D2Z062_9BACT1.790e-7253.18RecQ family ATP-dependent DNA helicase n=1 Tax=Can... [more]
A0A517Y9U5_9BACT2.180e-7252.79ATP-dependent DNA helicase RecQ n=1 Tax=Anatilimno... [more]
A0A2S9Y7M8_9DELT1.050e-7154.31ATP-dependent DNA helicase RecQ n=1 Tax=Enhygromyx... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11797contigL-elsbetiae_contig11797:220..2655 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score435.3
Seed ortholog evalue2.1e-119
Seed eggNOG ortholog2880.D7FZN1
KEGG koko:K03654
KEGG Pathwayko03018,map03018
Hectar predicted targeting categoryother localisation
EggNOG free text desc.four-way junction helicase activity
EggNOG OGsCOG0514@1,KOG0351@2759
EC3.6.4.12
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03400
Ec32 ortholog descriptionDEAD box helicase
Ec32 orthologEc-17_003860.1
Exons6
Model size804
Cds size804
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11797.1546.1prot_L-elsbetiae_contig11797.1546.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11797 220..2655 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815381.6728475-CDS-L-elsbetiae_contig11797:219..4841622815381.6728475-CDS-L-elsbetiae_contig11797:219..484Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11797 220..484 -
1691682870.5890532-CDS-L-elsbetiae_contig11797:219..4841691682870.5890532-CDS-L-elsbetiae_contig11797:219..484Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11797 220..484 -
1622815381.683173-CDS-L-elsbetiae_contig11797:734..7871622815381.683173-CDS-L-elsbetiae_contig11797:734..787Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11797 735..787 -
1691682870.6023068-CDS-L-elsbetiae_contig11797:734..7871691682870.6023068-CDS-L-elsbetiae_contig11797:734..787Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11797 735..787 -
1622815381.692394-CDS-L-elsbetiae_contig11797:1065..11671622815381.692394-CDS-L-elsbetiae_contig11797:1065..1167Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11797 1066..1167 -
1691682870.6108253-CDS-L-elsbetiae_contig11797:1065..11671691682870.6108253-CDS-L-elsbetiae_contig11797:1065..1167Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11797 1066..1167 -
1622815381.7016463-CDS-L-elsbetiae_contig11797:1560..16891622815381.7016463-CDS-L-elsbetiae_contig11797:1560..1689Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11797 1561..1689 -
1691682870.6191995-CDS-L-elsbetiae_contig11797:1560..16891691682870.6191995-CDS-L-elsbetiae_contig11797:1560..1689Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11797 1561..1689 -
1622815381.7132487-CDS-L-elsbetiae_contig11797:2086..21731622815381.7132487-CDS-L-elsbetiae_contig11797:2086..2173Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11797 2087..2173 -
1691682870.6273022-CDS-L-elsbetiae_contig11797:2086..21731691682870.6273022-CDS-L-elsbetiae_contig11797:2086..2173Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11797 2087..2173 -
1622815381.722457-CDS-L-elsbetiae_contig11797:2487..26551622815381.722457-CDS-L-elsbetiae_contig11797:2487..2655Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11797 2488..2655 -
1691682870.6381314-CDS-L-elsbetiae_contig11797:2487..26551691682870.6381314-CDS-L-elsbetiae_contig11797:2487..2655Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11797 2488..2655 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11797.1546.1

>prot_L-elsbetiae_contig11797.1546.1 ID=prot_L-elsbetiae_contig11797.1546.1|Name=mRNA_L-elsbetiae_contig11797.1546.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=268bp
QEGVVAKLLAGESCAGVFPTGAGKSICYQLPGTLMARQGLGLTLVVSPLI
ALMKDQTDALNAAGVPCAKLDSTLEAHEVFEIYEQIRAGSVALLYVSPER
FNNERFVNTLKGIKVALFVVDEAHCISEWGHNFRPDYLRLADFAKAAKAN
ARLALTATATPKVTVDIANRLDIPSSNVRRTPFYRPMLSLGAVRAPEDPA
ERTQMLVGMLLAAEQQQQQAGGGDGLAAGAAVVYVTLQRTAVEVAQALVA
AGIDARPYHAGLPALERE
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mRNA from alignment at L-elsbetiae_contig11797:220..2655-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11797.1546.1 ID=mRNA_L-elsbetiae_contig11797.1546.1|Name=mRNA_L-elsbetiae_contig11797.1546.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2436bp|location=Sequence derived from alignment at L-elsbetiae_contig11797:220..2655- (Laminarionema elsbetiae ELsaHSoW15)
CAGGAGGGGGTGGTGGCGAAGCTCCTCGCCGGAGAATCCTGCGCAGGCGT GTTCCCCACGGGCGCGGGGAAATCAATCTGCTACCAGCTCCCTGGGACGC TCATGGCGAGGCAGGGACTAGGCCTTACCCTCGTCGTGTCTCCTCTGATA GCGCTCATGAAGGACCAGGTGCGTTGGGTGGCCGCGATAGATAGATTGAG GTCGAATATCTGTGTAGGCCTATAGTGTAAGATGGTGCCGGTGGAATCGC GGCTTCCGCTTGCTCGCCAAAGGCAGCTCTGCACCTTTGCCGCCGTGTTG CTGCTGGGTGCCAGCAAGAGCGTCACGGCCTTGGCCGTCCCGCCTCTCCC CTATCGGCGGGGTAGGGTGCTCATACCCCGTGTCATGGCACACGAGCCAA GACCCAGCTCCGGGCTTCGCTCCCTCACGCTTCGTCTGTGACGCTTACTG CAAGCTCTCTCCGTTTCTTGCTTGAACCGCAGACTGATGCGCTGAATGCC GCGGGTGTCCCGTGCGCCAAGCTGGACTCCACCCTCGAGGCGCACGAGGT GTTCGAGATTTACGAACAGGTGAGGGCGGACACCGCAGGCCGGGGCGCGT TCTTTTCTGCTTGTATGTAGGTGGTGGCGGTGGCGGCGGCGGCGCACACT CGCGCGGGCTGCCCTGCGAATGGCGTGCGACGACTCCTCTCTCCAAATTA AAAACTCTCGAAGGTCTATCATAGGCGTCGTGTCTTTCTTGCCGCTTGTC GTGCTGCTGCGGTGGCGTGTTTCCCTCCGTCTGGCCTCTCACGCGTGTGT CTTTTGTTTGCCTCTTCGTGTCTTGTGCGGTGACGAGGTTTTGCTCTCGC GCTTGTGCAGGGCTTTTTCCCGTCGTGGAGACCTCGCCGAAAGTTGATGT TTTGCCTCGCCATGTGTATTCTGGCGACATAATTACTTTATTTTGTGTTT CTTGCGTCGACCGCAGATTCGTGCTGGCAGCGTCGCCTTGCTTTACGTTT CTCCGGAGCGGTTCAACAATGAGCGGTTCGTGAACACCCTGAAGGGCATC AAGGTGGCCCTATTCGTGGTCGACGAAGCCCACTGCATCAGCGAGGTATT ACTGTAAGCCGGCGAAAGCAAGGCGTTCTCTGCCGCCGCGGCTCCTGTTG AGACCTTCTGCGCGCACCGCTTTCGGTCGTTGTTTCCCAGCAGTAATTTC GACAGTACTCTTGCGCCAAACTTCATATTGTAGTTCCCAGGAAACAAAGA GTCATGAGGGCCCTCTACAGTTCAGACATCACCGCCCTCTTCGCTCTCCC TCCCGACAACAGCAAATAAAATCCTCGGGGTAGGCAAAACTCGAATGGTG ACGAAGTTTGCTTTATAATTACAGTACACGACCATGCTGAAAACGAGCCC CGGTTCTCCGCCCCCCCCCCCACCCCCGCGTCCGGCCTGTCTATCCCCCC CTCTCCCTACTTTTCCCGCCTGTTTTCCTTTCCGGCAGTGGGGGCACAAC TTCCGTCCCGACTACTTGCGGCTGGCCGACTTCGCAAAAGCCGCTAAGGC CAACGCGCGGTTAGCACTAACGGCGACGGCAACACCGAAGGTGGGTTTGG CGGGGGCGGAACGCACCGCCACGCCTAGTCCTCAGTCCCAGCATCCTGCG AGAGCGCATCCCAACATCGGCCGTGACGTGTTGGTTGTCCCAAGATCGTA GACCCTCGATTTTCTCAAGTTTAGTAGGTACGCAGGAGCGCTCTGTGCCG CTGCCCGCAGTCGTTCTTGGCCGAGTCTGATCCGCGCAAGGCTCATCGAG TCGCGCACATAAATCACGATCTGTTGCCCCCCCCTCACCTGTGCTCCGCA ACCAACCCTCTGTCGTAGGTTACCGTGGACATCGCTAACCGCCTCGACAT CCCGTCTTCCAACGTCAGAAGGTGTGTGTGCGCTAGCGGCTGCTGATGTC GATTCATACTTCGTATCAAAAAAGCCCGTCGTGCGCTGGGCGGCGGCGGC GGCGGCGTTTTTGACCGCTGATCATATATGCGGCCTCCCTGCTGCGTTCC TCCCCCGGCGCACCTCGCCCAGAACTCGTATCAGAAAGCCCAGCTCCGGC CCCCACGCAACCCCCCTGCAACATCGGCCGGTCTGCTGTTATCCCGCCAC CAAATACCGCTTGTTTTTCAGAACGCCGTTTTACCGCCCCATGCTGAGCC TGGGGGCCGTGCGCGCTCCGGAGGACCCAGCGGAGCGCACCCAGATGCTT GTCGGCATGCTGCTGGCGGCGGAGCAGCAGCAGCAGCAAGCGGGGGGAGG GGATGGGTTGGCCGCCGGGGCGGCGGTGGTGTACGTGACGCTTCAGCGGA CGGCAGTGGAGGTGGCCCAGGCGCTCGTCGCGGCCGGGATTGACGCCCGC CCGTACCACGCGGGCCTGCCGGCTCTTGAGCGGGAG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11797:220..2655-

>mRNA_L-elsbetiae_contig11797.1546.1 ID=mRNA_L-elsbetiae_contig11797.1546.1|Name=mRNA_L-elsbetiae_contig11797.1546.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1608bp|location=Sequence derived from alignment at L-elsbetiae_contig11797:220..2655- (Laminarionema elsbetiae ELsaHSoW15)
CAGGAGGGGGTGGTGGCGAAGCTCCTCGCCGGAGAATCCTGCGCAGGCGT
GTTCCCCACGGGCGCGGGGAAATCAATCTGCTACCAGCTCCCTGGGACGC
TCATGGCGAGGCAGGGACTAGGCCTTACCCTCGTCGTGTCTCCTCTGATA
GCGCTCATGAAGGACCAGCAGGAGGGGGTGGTGGCGAAGCTCCTCGCCGG
AGAATCCTGCGCAGGCGTGTTCCCCACGGGCGCGGGGAAATCAATCTGCT
ACCAGCTCCCTGGGACGCTCATGGCGAGGCAGGGACTAGGCCTTACCCTC
GTCGTGTCTCCTCTGATAGCGCTCATGAAGGACCAGACTGATGCGCTGAA
TGCCGCGGGTGTCCCGTGCGCCAAGCTGGACTCCACCCTCGAGGCGCACG
AGGTGTTCGAGATTTACGAACAGACTGATGCGCTGAATGCCGCGGGTGTC
CCGTGCGCCAAGCTGGACTCCACCCTCGAGGCGCACGAGGTGTTCGAGAT
TTACGAACAGATTCGTGCTGGCAGCGTCGCCTTGCTTTACGTTTCTCCGG
AGCGGTTCAACAATGAGCGGTTCGTGAACACCCTGAAGGGCATCAAGGTG
GCCCTATTCGTGGTCGACGAAGCCCACTGCATCAGCGAGATTCGTGCTGG
CAGCGTCGCCTTGCTTTACGTTTCTCCGGAGCGGTTCAACAATGAGCGGT
TCGTGAACACCCTGAAGGGCATCAAGGTGGCCCTATTCGTGGTCGACGAA
GCCCACTGCATCAGCGAGTGGGGGCACAACTTCCGTCCCGACTACTTGCG
GCTGGCCGACTTCGCAAAAGCCGCTAAGGCCAACGCGCGGTTAGCACTAA
CGGCGACGGCAACACCGAAGTGGGGGCACAACTTCCGTCCCGACTACTTG
CGGCTGGCCGACTTCGCAAAAGCCGCTAAGGCCAACGCGCGGTTAGCACT
AACGGCGACGGCAACACCGAAGGTTACCGTGGACATCGCTAACCGCCTCG
ACATCCCGTCTTCCAACGTCAGAAGGTTACCGTGGACATCGCTAACCGCC
TCGACATCCCGTCTTCCAACGTCAGAAGAACGCCGTTTTACCGCCCCATG
CTGAGCCTGGGGGCCGTGCGCGCTCCGGAGGACCCAGCGGAGCGCACCCA
GATGCTTGTCGGCATGCTGCTGGCGGCGGAGCAGCAGCAGCAGCAAGCGG
GGGGAGGGGATGGGTTGGCCGCCGGGGCGGCGGTGGTGTACGTGACGCTT
CAGCGGACGGCAGTGGAGGTGGCCCAGGCGCTCGTCGCGGCCGGGATTGA
CGCCCGCCCGTACCACGCGGGCCTGCCGGCTCTTGAGCGGGAGAACGCCG
TTTTACCGCCCCATGCTGAGCCTGGGGGCCGTGCGCGCTCCGGAGGACCC
AGCGGAGCGCACCCAGATGCTTGTCGGCATGCTGCTGGCGGCGGAGCAGC
AGCAGCAGCAAGCGGGGGGAGGGGATGGGTTGGCCGCCGGGGCGGCGGTG
GTGTACGTGACGCTTCAGCGGACGGCAGTGGAGGTGGCCCAGGCGCTCGT
CGCGGCCGGGATTGACGCCCGCCCGTACCACGCGGGCCTGCCGGCTCTTG
AGCGGGAG
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