mRNA_L-elsbetiae_contig11785.1539.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11785.1539.1
Unique NamemRNA_L-elsbetiae_contig11785.1539.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig11785.1539.1 vs. uniprot
Match: D7FTF1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTF1_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 7.950e-8
Identity = 38/60 (63.33%), Postives = 42/60 (70.00%), Query Frame = 3 
Query:  201 MLDEAREAREEXXXXXXXLEGHTKGDKSKAKANVFAYTAAISACGKAGLWEEAVGLLDAM 380
            MLD+ARE   E        EG   G K+K KANVFAYTAA+SACGKAG WEEAVGLLD +
Sbjct:    2 MLDDARE---EEDGGDGGNEGG--GMKTKGKANVFAYTAAVSACGKAGRWEEAVGLLDIL 56
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11785.1539.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FTF1_ECTSI7.950e-863.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11785contigL-elsbetiae_contig11785:93..3596 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score67.8
Seed ortholog evalue9.3e-09
Seed eggNOG ortholog2880.D8LCM4
Hectar predicted targeting categoryother localisation
EggNOG free text desc.endonuclease activity
EggNOG OGsKOG4197@1,KOG4197@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size845
Cds size843
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11785.1539.1prot_L-elsbetiae_contig11785.1539.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11785 93..3594 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815380.8081808-CDS-L-elsbetiae_contig11785:92..5631622815380.8081808-CDS-L-elsbetiae_contig11785:92..563Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11785 93..563 -
1691682870.1184783-CDS-L-elsbetiae_contig11785:92..5631691682870.1184783-CDS-L-elsbetiae_contig11785:92..563Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11785 93..563 -
1622815380.8225641-CDS-L-elsbetiae_contig11785:902..11281622815380.8225641-CDS-L-elsbetiae_contig11785:902..1128Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11785 903..1128 -
1691682870.1297324-CDS-L-elsbetiae_contig11785:902..11281691682870.1297324-CDS-L-elsbetiae_contig11785:902..1128Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11785 903..1128 -
1622815380.8365507-CDS-L-elsbetiae_contig11785:2955..30471622815380.8365507-CDS-L-elsbetiae_contig11785:2955..3047Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11785 2956..3047 -
1691682870.1370487-CDS-L-elsbetiae_contig11785:2955..30471691682870.1370487-CDS-L-elsbetiae_contig11785:2955..3047Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11785 2956..3047 -
1622815380.8535874-CDS-L-elsbetiae_contig11785:3540..35941622815380.8535874-CDS-L-elsbetiae_contig11785:3540..3594Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11785 3541..3594 -
1691682870.1442-CDS-L-elsbetiae_contig11785:3540..35941691682870.1442-CDS-L-elsbetiae_contig11785:3540..3594Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11785 3541..3594 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815380.8651266-UTR-L-elsbetiae_contig11785:3594..35961622815380.8651266-UTR-L-elsbetiae_contig11785:3594..3596Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11785 3595..3596 -
1691682870.1514137-UTR-L-elsbetiae_contig11785:3594..35961691682870.1514137-UTR-L-elsbetiae_contig11785:3594..3596Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11785 3595..3596 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11785.1539.1

>prot_L-elsbetiae_contig11785.1539.1 ID=prot_L-elsbetiae_contig11785.1539.1|Name=mRNA_L-elsbetiae_contig11785.1539.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=281bp
MKEAGVAPDDRTFNAAIEACGRGGRWERAVSLMDDMRREGLDPDGLTYST
VIAACDRGGAWDVCLWMLDEAREAREEEEEEEEELEGHTKGDKSKAKANV
FAYTAAISACGKAGLWEEAVGLLDAMRDDGVPPNGVTLRTVLLALENAPT
AAAPRPIETRGHASTAPGGGSSSSSPKPASPPLLPGPPASAGAGGAPSSG
GESRGRGRSSPPPLPWQVAFSLLESRAGGGGGWGGQEGGGATVGIFPGPR
DFSAGLTAACFGGAEWPSIVQVRSLVFCVF*
back to top

mRNA from alignment at L-elsbetiae_contig11785:93..3596-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11785.1539.1 ID=mRNA_L-elsbetiae_contig11785.1539.1|Name=mRNA_L-elsbetiae_contig11785.1539.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3504bp|location=Sequence derived from alignment at L-elsbetiae_contig11785:93..3596- (Laminarionema elsbetiae ELsaHSoW15)
AGATGAAAGAGGCTGGCGTCGCTCCAGACGATAGGACGTTTAACGCCGCC
ATCGAGGCAAGACGAAAAATGCAACGTGGGCGCACTCACACAAGACGCGG
GGGTTTTCTTAGAAGATGTTGAGGGGGTACCGTGGTCTCGAGGACCTAGG
GGGTGGGGTGGGGTGTCCTTCTCGTGCACGTTTTTTTTTTCTGTTGCAAG
CTGCAAGTTTGCAAAATGTAGACTAATGATGGTGAGTTTGGAGTAGCCTA
TGAACACCACCGAGTTGTTTCTGCTGCGCCACACCTCCCGATATCGGTCG
GTCACCGAGGTCGACTTCAGGGCTTCAGGGCTTGGAAGCGCGATGAAATG
CGTGGTTTCCGGCGCGGTGTGTCTCGTCGTTGGTTGGTGGTTTTCCCTTT
ACGACAGACACGAAGAGATCCCACCCGGGTCCTCTTCGCGGAAAACAGAA
CTTTATTTCAGCTACATACCCCCCCCTCCCCCCCTCCCCCCCCCTTGCCA
AACCTCGATCCCCTTGTGGTCTTGCTGTATTTTGTCCTAAACGAAGCAGG
CGTGCGGGCGGGGGGGTCGCTGGGAGCGCGCGGTGTCGCTCATGGACGAC
ATGCGAAGGGAGGGTCTGGACCCGGATGGACTCACCTACAGGTGAAAAAA
AGTGGGGCAAGAGTTAAACTACCGTAGATGACACAAGATACCACCACCCC
CCCCACCCTGGACAGATTTTCAAAGCTCGATTACTCCGTAGCGAAGAGGG
TGCCGGCACCAAACGATGCATTTCCCGGACAGCACTCGACTAGATATTTC
CAACGCCACTCCCTTAAGGCACTGGCACTCTTCTTGCCGGGGAGGAATCG
AGCTTTGAAAATCTGTTCAGGGGGGGGGGGTGGTATCTTGTGTCATCTAG
GTATACCGCGCACAAACGAACTCCTGCCCCCCCTGAAACCAGCATGAGAC
CGTCTACCAGGTAGTTCACACGGAAAACAAGCCACCCTTCTGTGTGGCCA
CGGTTCAGTACTCTGACAAGATGCCCTCGTGGCAAGGAAGGAGCCAGCCC
ATCGAGCACTGGAAATAAATGTGAAGAAAAAAAAGTCAGCACTGCTATTT
TGTATGCGATGATGGAAAATAAATATATATATATATCGACTAAATACTGT
GAAAACGGGAATCGACCACGGGACTGTCAGTGTTGGATTAAATAGTACGG
ACAGATGGGAGTACCTGGGTAGAGAGATGGGAACGGTTTTTAATGTGAAA
AAAAAAAAAAAACGACAACGACAACAACAATCTCGACTCTCTCCCGGTCG
TACAGTACATAGGACATAGTTCATGTGGTGAAACCGAACCTGTGGCCCCG
GTGTTCGATGATGGGAAGCAAACCACGGTACCATGGTCGCCGCGGTCCAC
ACTCGCTCTCCCGAGTGTGAAACCGTGGGCGTGGGGGTGTGGGCTCTTCG
TGACACTCTTGTAACACACATGCAAGAGATCGAGAGAAAGTGGAGTTTGT
TTTTAGCGAGCGTCCTTTCCGATCCATCTATTTTTTTATCTTTATTTTTT
TCGTTGTTGGCCTTGCTTGACCTGACCTGAGGTTTTCGCGAGAGGGCCGG
ATCTGGCGGTTGTTTCACATTTGTTTTCTCGTTGTTGGCCTTGCTTGACT
TGACCTAAGTTTTTCTTGAGAGGGCCGGATCTGGCGATTGTTTGGTCTTG
CTGGTGCTGGTGCTGGTGCTGGTGCTGGTGCTGCTGGCGACATGGTGGGC
TCCTACATACGATACCTGTGGCGCCCAGAACGTTTGCTGCATAGGACGTT
TCGAGGTTGGGTTAACACACCGATAGCACCTAGCACTTTACTGCCGACGC
GATGTTTTGCAGATGGTTCACACTCAGAACCAGAAGACACACACGTGATG
GACCCAACCCAACCCAAACCCTAACCCTAACCCGCACCGACGTCCAACCG
GGGCCGAGAAATCGCCGCGAATGCGGCTGCGACGCTTTCGCGTGCGCTTG
GTCCGCAGGTCAGAACGTGGCCTCCCGCTCACACGCTTTGACCGATCACA
GGGCGCATGTGGCGTAGTCCCGAAAGATCTACTGCCAAGGTGTAAACAGC
AGTACTGGACGTTTCATATGGTGTACATACATAGCGCAGGGAACAGTATG
GCCTGGCCGCGGTGCTTCGCCCCTCTCGTGACCCAAACAACCAATCGAGA
AGCGCAGTCTTTAGAGCGAAGCAACGTCGCCAGAACCAAGCGCAACGGGG
GTCCGGTGATTCGCGGTTTACACAGGCGGAGTCTAGTTTTCGTTTTAACG
CCGTCGGAGAGGGGTTTTTACCCCCCCCCCCCACCCCGCGCCCTCCCGAA
CTACTCCTGTCCCTCATTCCCGTCTCCCGTGCCCCTCCCCCCCGCCGGGC
GGAGTTCGATTTACAATCATAGCCACAACCCTTGAGCTAACATTCCCGCT
ATCTTCGCCGCACCGCAGCACCGTGATAGCAGCCTGTGACCGCGGTGGGG
CGTGGGACGTCTGTCTCTGGATGCTCGACGAGGCTAGGGAGGCTAGGGAG
GAGGAAGAGGAGGAGGAGGAGGAGTTGGAGGGGCACACGAAAGGGGACAA
GTCCAAGGCTAAGGCCAACGTGTTCGCGTACACGGCGGCCATCTCGGCCT
GCGGGAAGGCCGGGCTCTGGGAGGAAGCCGTCGGCCTGTTGGACGTGAGA
AACTCGGCGACGTGCGTGTCCGCTTGGATTGGGTGGTCCGAGCAAGGTTA
GGCTGTTGTTGCGGTGGGGGGAAAACAAGCTTGTGGGCCGAGCTTCGACG
GTGCGAGATACGCAACAGCAGCAGCAGCAGCAGCAACAGCATCATCGAAG
ACTTTGTGTGTGCTCTGCATCGAGGCTTTTGAATTTTTGGTTTGTGCTGT
CGTGGATGCTATGGAGGTATGTATGTCGCTGCTCGTTGTCTCCGTGTTCG
TGCTCCGGACATGCTGTACTGCCGGTGCCGCGCGCGCGGCCTTCCCCTGC
TTCACCCGTAACCCCCCCCCCCCCCCCCCCCAGGCGATGCGCGACGACGG
GGTCCCGCCAAACGGAGTCACCCTCCGCACGGTCCTCCTCGCCCTCGAAA
ACGCACCCACGGCGGCGGCGCCCCGGCCAATCGAAACCCGAGGACACGCG
TCCACCGCTCCCGGCGGCGGCAGCAGCAGCAGCAGCCCCAAGCCGGCCTC
TCCGCCCCTACTCCCCGGTCCCCCGGCATCAGCAGGTGCTGGCGGGGCCC
CCTCCTCCGGCGGAGAAAGCCGGGGGCGCGGCCGGTCGTCCCCCCCCCCC
CTCCCTTGGCAGGTGGCGTTTTCGCTGTTGGAAAGCAGGGCCGGGGGCGG
GGGGGGGTGGGGGGGGCAGGAGGGGGGGGGGGCGACGGTGGGGATTTTCC
CCGGGCCGAGGGATTTCTCGGCGGGGTTGACGGCGGCGTGTTTTGGGGGC
GCGGAGTGGCCTTCTATTGTACAGGTGAGGTCGTTGGTGTTTTGTGTTTT
TTAA
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig11785:93..3596-

>mRNA_L-elsbetiae_contig11785.1539.1 ID=mRNA_L-elsbetiae_contig11785.1539.1|Name=mRNA_L-elsbetiae_contig11785.1539.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1686bp|location=Sequence derived from alignment at L-elsbetiae_contig11785:93..3596- (Laminarionema elsbetiae ELsaHSoW15)
ATGAAAGAGGCTGGCGTCGCTCCAGACGATAGGACGTTTAACGCCGCCAT
CGAGATGAAAGAGGCTGGCGTCGCTCCAGACGATAGGACGTTTAACGCCG
CCATCGAGGCGTGCGGGCGGGGGGGTCGCTGGGAGCGCGCGGTGTCGCTC
ATGGACGACATGCGAAGGGAGGGTCTGGACCCGGATGGACTCACCTACAG
GCGTGCGGGCGGGGGGGTCGCTGGGAGCGCGCGGTGTCGCTCATGGACGA
CATGCGAAGGGAGGGTCTGGACCCGGATGGACTCACCTACAGCACCGTGA
TAGCAGCCTGTGACCGCGGTGGGGCGTGGGACGTCTGTCTCTGGATGCTC
GACGAGGCTAGGGAGGCTAGGGAGGAGGAAGAGGAGGAGGAGGAGGAGTT
GGAGGGGCACACGAAAGGGGACAAGTCCAAGGCTAAGGCCAACGTGTTCG
CGTACACGGCGGCCATCTCGGCCTGCGGGAAGGCCGGGCTCTGGGAGGAA
GCCGTCGGCCTGTTGGACCACCGTGATAGCAGCCTGTGACCGCGGTGGGG
CGTGGGACGTCTGTCTCTGGATGCTCGACGAGGCTAGGGAGGCTAGGGAG
GAGGAAGAGGAGGAGGAGGAGGAGTTGGAGGGGCACACGAAAGGGGACAA
GTCCAAGGCTAAGGCCAACGTGTTCGCGTACACGGCGGCCATCTCGGCCT
GCGGGAAGGCCGGGCTCTGGGAGGAAGCCGTCGGCCTGTTGGACGCGATG
CGCGACGACGGGGTCCCGCCAAACGGAGTCACCCTCCGCACGGTCCTCCT
CGCCCTCGAAAACGCACCCACGGCGGCGGCGCCCCGGCCAATCGAAACCC
GAGGACACGCGTCCACCGCTCCCGGCGGCGGCAGCAGCAGCAGCAGCCCC
AAGCCGGCCTCTCCGCCCCTACTCCCCGGTCCCCCGGCATCAGCAGGTGC
TGGCGGGGCCCCCTCCTCCGGCGGAGAAAGCCGGGGGCGCGGCCGGTCGT
CCCCCCCCCCCCTCCCTTGGCAGGTGGCGTTTTCGCTGTTGGAAAGCAGG
GCCGGGGGCGGGGGGGGGTGGGGGGGGCAGGAGGGGGGGGGGGCGACGGT
GGGGATTTTCCCCGGGCCGAGGGATTTCTCGGCGGGGTTGACGGCGGCGT
GTTTTGGGGGCGCGGAGTGGCCTTCTATTGTACAGGTGAGGTCGTTGGTG
TTTTGTGTTTTTTAAGCGATGCGCGACGACGGGGTCCCGCCAAACGGAGT
CACCCTCCGCACGGTCCTCCTCGCCCTCGAAAACGCACCCACGGCGGCGG
CGCCCCGGCCAATCGAAACCCGAGGACACGCGTCCACCGCTCCCGGCGGC
GGCAGCAGCAGCAGCAGCCCCAAGCCGGCCTCTCCGCCCCTACTCCCCGG
TCCCCCGGCATCAGCAGGTGCTGGCGGGGCCCCCTCCTCCGGCGGAGAAA
GCCGGGGGCGCGGCCGGTCGTCCCCCCCCCCCCTCCCTTGGCAGGTGGCG
TTTTCGCTGTTGGAAAGCAGGGCCGGGGGCGGGGGGGGGTGGGGGGGGCA
GGAGGGGGGGGGGGCGACGGTGGGGATTTTCCCCGGGCCGAGGGATTTCT
CGGCGGGGTTGACGGCGGCGTGTTTTGGGGGCGCGGAGTGGCCTTCTATT
GTACAGGTGAGGTCGTTGGTGTTTTGTGTTTTTTAA
back to top