prot_L-elsbetiae_contig11785.1539.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig11785.1539.1
Unique Nameprot_L-elsbetiae_contig11785.1539.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length281
Homology
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BLAST of mRNA_L-elsbetiae_contig11785.1539.1 vs. uniprot
Match: D7FTF1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FTF1_ECTSI)

HSP 1 Score: 63.9 bits (154), Expect = 7.950e-8
Identity = 38/60 (63.33%), Postives = 42/60 (70.00%), Query Frame = 0 
Query:   67 MLDEAREAREEXXXXXXXLEGHTKGDKSKAKANVFAYTAAISACGKAGLWEEAVGLLDAM 126
            MLD+ARE   E        EG   G K+K KANVFAYTAA+SACGKAG WEEAVGLLD +
Sbjct:    2 MLDDARE---EEDGGDGGNEGG--GMKTKGKANVFAYTAAVSACGKAGRWEEAVGLLDIL 56
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11785.1539.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FTF1_ECTSI7.950e-863.33Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 68..91
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 1..143
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 102..134
e-value: 6.2E-8
score: 30.3
coord: 12..44
e-value: 1.4E-8
score: 32.4
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 8..55
e-value: 6.6E-11
score: 42.2
coord: 99..144
e-value: 1.1E-8
score: 35.2
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 99..133
score: 12.321
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 9..43
score: 12.551
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 44..78
score: 7.202
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 1..92
e-value: 4.6E-20
score: 74.2
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 93..154
e-value: 1.2E-10
score: 43.4

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11785contigL-elsbetiae_contig11785:93..3594 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11785.1539.1mRNA_L-elsbetiae_contig11785.1539.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig11785 93..3596 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig11785.1539.1 ID=prot_L-elsbetiae_contig11785.1539.1|Name=mRNA_L-elsbetiae_contig11785.1539.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=281bp
MKEAGVAPDDRTFNAAIEACGRGGRWERAVSLMDDMRREGLDPDGLTYST
VIAACDRGGAWDVCLWMLDEAREAREEEEEEEEELEGHTKGDKSKAKANV
FAYTAAISACGKAGLWEEAVGLLDAMRDDGVPPNGVTLRTVLLALENAPT
AAAPRPIETRGHASTAPGGGSSSSSPKPASPPLLPGPPASAGAGGAPSSG
GESRGRGRSSPPPLPWQVAFSLLESRAGGGGGWGGQEGGGATVGIFPGPR
DFSAGLTAACFGGAEWPSIVQVRSLVFCVF*
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR002885Pentatricopeptide_repeat
IPR011990TPR-like_helical_dom_sf