mRNA_L-elsbetiae_contig11462.1283.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11462.1283.1
Unique NamemRNA_L-elsbetiae_contig11462.1283.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig11462.1283.1 vs. uniprot
Match: D7G7L5_ECTSI (RanBP, RRM1, C2H2 zinc finger protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7L5_ECTSI)

HSP 1 Score: 165 bits (418), Expect = 1.080e-41
Identity = 148/253 (58.50%), Postives = 161/253 (63.64%), Query Frame = 1 
Query:    1 YFYESTTGVYYDPRSKLYCKDMQWHSHTPGLNPAFTPVAQXXXXXXXXXXXXXXXXEAGQPYPLAGNHLTESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWKKSS-RLAFGFKGAKLGKAXXXXXXXXXXXXXXXXXXXXGADSESSGDENGDATXXXXXXXXXXXXXXXVGVGGALAKKRQLQDVSKWNARRREAQQGEAG--TNGVGVSAQPLHIAPRGRQQQQPPQATPSSYDPPAPLL 750
            YFYESTTGVYYDPRSKLYCK M W+SHTPG +PAF PV+Q                +A        +           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWKKSS RLAFGFKGAKL KA                    GADS+SSGD++G                  VGVGGALAKKRQL+DVSKWNAR+ EAQQGE G  +NG   +AQPLHIAPR +QQ   PQAT  SYDPPAPLL
Sbjct:  374 YFYESTTGVYYDPRSKLYCKGMVWYSHTPGQDPAFNPVSQQGGT------------DARSSLANGASEGVSVGDATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWKKSSSRLAFGFKGAKLAKAAAGGGGVGASGVLG------GADSDSSGDDSGGEVAAGVGRGTVGGG---VGVGGALAKKRQLEDVSKWNARKLEAQQGEGGGASNGTKAAAQPLHIAPRRQQQPSAPQAT-ISYDPPAPLL 604
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11462.1283.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G7L5_ECTSI1.080e-4158.50RanBP, RRM1, C2H2 zinc finger protein n=2 Tax=Ecto... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11462contigL-elsbetiae_contig11462:2557..6004 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score168.3
Seed ortholog evalue6.8e-39
Seed eggNOG ortholog2880.D7G7L5
Hectar predicted targeting categoryother localisation
EggNOG free text desc.RNA splicing
EggNOG OGsKOG0154@1,KOG0154@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons4
Model size1134
Cds size1134
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11462.1283.1prot_L-elsbetiae_contig11462.1283.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11462 2557..6004 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815352.8654823-CDS-L-elsbetiae_contig11462:2556..27121622815352.8654823-CDS-L-elsbetiae_contig11462:2556..2712Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11462 2557..2712 -
1691682856.0454729-CDS-L-elsbetiae_contig11462:2556..27121691682856.0454729-CDS-L-elsbetiae_contig11462:2556..2712Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11462 2557..2712 -
1622815352.877216-CDS-L-elsbetiae_contig11462:3608..38071622815352.877216-CDS-L-elsbetiae_contig11462:3608..3807Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11462 3609..3807 -
1691682856.0616727-CDS-L-elsbetiae_contig11462:3608..38071691682856.0616727-CDS-L-elsbetiae_contig11462:3608..3807Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11462 3609..3807 -
1622815352.8862941-CDS-L-elsbetiae_contig11462:3903..40671622815352.8862941-CDS-L-elsbetiae_contig11462:3903..4067Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11462 3904..4067 -
1691682856.073643-CDS-L-elsbetiae_contig11462:3903..40671691682856.073643-CDS-L-elsbetiae_contig11462:3903..4067Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11462 3904..4067 -
1622815352.9000678-CDS-L-elsbetiae_contig11462:5389..60041622815352.9000678-CDS-L-elsbetiae_contig11462:5389..6004Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11462 5390..6004 -
1691682856.0851507-CDS-L-elsbetiae_contig11462:5389..60041691682856.0851507-CDS-L-elsbetiae_contig11462:5389..6004Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11462 5390..6004 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11462.1283.1

>prot_L-elsbetiae_contig11462.1283.1 ID=prot_L-elsbetiae_contig11462.1283.1|Name=mRNA_L-elsbetiae_contig11462.1283.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=378bp
YFYESTTGVYYDPRSKLYCKDMQWHSHTPGLNPAFTPVAQQQQQQQQQQQ
QQQGGGEAGQPYPLAGNHLTESAAAAGGPTAAAAAAAGASAAAAPASAPA
KAAGVKRGGGGWKKSSRLAFGFKGAKLGKAGGGGGGGGGGGGVGASGVLG
GADSESSGDENGDATGSNGAAAAAAAAAAAVGVGGALAKKRQLQDVSKWN
ARRREAQQGEAGTNGVGVSAQPLHIAPRGRQQQQPPQATPSSYDPPAPLL
APPSYDPPAPGSASGGAEVGGRGPGGGRGGGGEGGSRKKGDGSGPPSAAG
GVGAGAGAGARSDSSVAGGAVVVACLLCRRSFGSPEMLRKHEKKSKLHKQ
NLLAAAAAARGGGDGDGVHGSQAAGGGG
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mRNA from alignment at L-elsbetiae_contig11462:2557..6004-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11462.1283.1 ID=mRNA_L-elsbetiae_contig11462.1283.1|Name=mRNA_L-elsbetiae_contig11462.1283.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=3448bp|location=Sequence derived from alignment at L-elsbetiae_contig11462:2557..6004- (Laminarionema elsbetiae ELsaHSoW15)
TACTTCTACGAGTCGACGACGGGAGTCTACTACGACCCGCGGAGCAAGCT
CTACTGCAAGGACATGCAGTGGCACAGTCACACCCCGGGGCTGAATCCCG
CCTTCACCCCGGTCGCCCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGGGCGGCGGCGAGGCTGGGCAACCATATCCCCTCGCGGGCAA
CCACCTCACCGAGAGTGCGGCAGCAGCCGGAGGACCAACGGCAGCGGCAG
CGGCGGCAGCGGGCGCTTCGGCGGCGGCGGCCCCTGCATCGGCCCCCGCC
AAAGCTGCCGGCGTGAAGCGGGGCGGGGGCGGCTGGAAGAAGTCCTCGCG
CCTCGCCTTCGGGTTCAAGGGCGCCAAGCTCGGGAAGGCGGGCGGCGGCG
GCGGCGGCGGCGGCGGCGGCGGCGGCGTCGGGGCCAGCGGGGTGCTGGGC
GGTGCCGACAGCGAGAGCTCGGGGGATGAGAACGGCGATGCGACCGGGAG
CAACGGGGCTGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGTGGGAGTCG
GAGGGGCGCTGGCCAAGAAGCGCCAGCTGCAGGACGTGTCCAAGTGGAAC
GCGAGGAGACGGGAGGTGCGGGCATCTGTTTTTTCGAAGTTTTCGATTGC
ATGTCGGCCGTCTACGCCCGTCTTGTCGCAAAACGTCGGTCGAAGGGGGA
CTGCTGTTGCCCACCCACTAACTAACCCTCCCTCACCGCCCCCGTGTTTT
TTTTTTTTCTTCTTTTTCATATTTATTTCCAGTGCTCGATGGGCTTCTTG
TGACGAGGGCATCTTGCCAGAGTACTGAACCGTGGTCACACAGAGGGTGT
ATAGATACAGTACCTTAGTGTTTTTTTTTATTAATGCATACTAAGTCAGC
AGTCTGTGCACGTCCAGTCTGTGAAAGATGGAAAGAGGCGTGTCCAATCT
GTGAAAAATGGAAAGAGGCGTGTCCAGTCTGTGAAAAATGGGAAGAGGCG
TGTCCAGTCTGTGAAAGATGGAAAGAGGCGTGCCCAGGCTGTGAAAAATG
GAAAGAGGCGTGTCCAGTCTGCGAAAAATGGAAAGAGGCGTTGCAGAGGG
ACTGCTGTGGTAGGCATACTATTGAACCGTTTTTTTTAATTAATGTATAC
AATTGTCAGCAGTCTACGTCCAGTCTGCGAAGAAGTCGTTCCGGAGGGAC
TGTTGTAGGCGTTTCAACCGTTTTTTTAGGACTTTTTGGCCGGGAAATCG
ATCGGCTTTCCTTAGACGGCTTGCTGTCCGTAGTGGCGTAGCGCAGTTGG
AGGTGTTGATATGTATGTAGGCGTGTTCGTGCTGCGGTGATTTTTATGGT
TGGCATACAGATTCGGATACCGTAATCATGCGGGTTATCGCACCCCCGTG
TTATGTAGCGTTTTTCTATAGCGTTTTTCTCCGCAACCAGAAGGGTACCA
CTGCCGAATAGGGTGGTTTTCGAAACGTCTCGTCGGGGTTTTTCCAGAGA
GGTATCACATAGTGGTCGCACCCTTTTGGTTGTGGAGAAATACGCTGTAG
AAAAACGCTATTTAACACGGGGGTGCGATAACCCGCATGATTACGGTAAC
TGCTCTTATCGATAGATTCTAGAGGAACGATTCTCGTCTTCTTTTTTTTT
GTCTTTTTCCTTCCTTCGTTCAGAAGGCATTGGCGGCACAGGCTCGACTT
TACCGTTGTCGAATCGAATCAAGCGAGAGAGAGAGAGAGAGAGAGAGAGA
GAGAGAGAGAGAGAGAGAGAAAAAAAAAAGAGAGAGTGCCCGCCGCGCGC
GCTCCCGGCGCGCACAGCCGGCCCCGCTCCCCCCCCCCCCCCCCCCCCTT
TCCGCTGCGAGCTTACTACACAACCCCTTTCCTCTCCCCCCGCCGCCCCG
TTCTCGTGGCGAAACGCCCTCGTTTGGGTTTCCGCAGGCGCAGCAAGGCG
AAGCGGGCACCAACGGCGTCGGGGTGTCCGCCCAGCCTCTGCACATCGCC
CCCCGCGGGCGCCAGCAGCAGCAGCCGCCGCAAGCCACCCCCTCGTCGTA
CGACCCACCCGCCCCGCTGCTGGCCCCCCCATCGTACGACCCCCCCGCCC
CGTTGCTGGCCCCCCCTCTTCCCGGAGAGAACGGTGCCGCCTTTGGGGTC
CCCGCCGAGGGGGCCGGAAGCCGCGGGAGAGAATCAGGCCGCGCTAGGGG
CTCGGCGAGCGGTGGGGCGGAGGTGGGCGGCAGGGGCCCGGGAGGGGGAA
GAGGAGGAGGAGGAGAGGGGGGGTCAAGAAAAAAGGGGGATGGGTCGGGC
CCTCCTTCTGCGGCTGGTGGCGTGGGGGCGGGGGCGGGGGCGGGGGCAAG
GAGCGATTCTTCGGTGGCGGGGGGGGCGGTTGTCGTGGCGTGTCTGGTGA
GAGTTTCTGCCGCAAGCCAGCGCCGGCGGTTTTAACATACATAAATATTT
GCAAAAAAATAAAAAATAAAAGAGATTTGCGAGATGTTCCCGACTTGGGT
TTTTGTTGATGCTAGCACCTTTTATTGGGTATAAGTTAAGTCCGTGACCA
CGGGAATTGACCGCATCAAGTGTTGGAGTAGTATATGTATACGGGCATTG
AGAGGTACTGGATGGAGAGATCGGAACGGTTTTTAATTGTGAAGACAACA
TACACATTGGGCGGTTTCCTGTGCTTCTAGTCCGGCGAATATGGCTACGG
CCGGACCGGCCCACCGGAGGGCGTGGGTGCGGCGTGGGTACCTAAAATAT
ACATACCGTAGGTGACACAAGATACCACCCCCTGGACAGATTTTCAAAGC
TCGATCCCTCCCCAGCAAGAAGAGCGTCAGGGCCGAAAGGGGTGGGGTTG
GAAAGATCTAGTCGAGGGCTGTCCGAAAATGTGCTGTTTGGGGTGCTGGC
ACCCTCTTCGTTACGAGTAATGGAGCTCTAAAATGCGGTCCAGGGGGTGT
GCTATCTTGTGTCATCTACGGTATGTACAGCATCTATCAATGTGCTCTTG
TGTGTTCGGCGGCCGCATGGGATAGTTGAGCGAGGAAGTATGCATCTTGT
TGCCTTAGCCTTTGGACCAGCATTGCGTACATGTACTACTACTTTGCTGT
AATACTTATCCTGTCCTGCGCTGCGCCGCACTCACGACCGTTTGTCGTGG
CGCAAAGGGGCACGATGAGACGCCCGGCGCCTCAAAGCATGATGATACTA
ACTTTGTCTTTTACTTACGTTTCCCGTTCCGCATCGGCGTGGTACATATA
TTACATGCGTCGTATGCATGCATGTGCTTGTTGCGAATGCAGCTCTGCCG
CCGGTCGTTCGGCTCTCCGGAGATGCTCCGCAAGCACGAGAAAAAGTCCA
AGCTCCACAAGCAGAACCTCCTCGCCGCGGCCGCCGCGGCAAGAGGAGGG
GGCGACGGCGACGGCGTGCATGGCTCGCAGGCGGCAGGGGGCGGGGGG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11462:2557..6004-

>mRNA_L-elsbetiae_contig11462.1283.1 ID=mRNA_L-elsbetiae_contig11462.1283.1|Name=mRNA_L-elsbetiae_contig11462.1283.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2268bp|location=Sequence derived from alignment at L-elsbetiae_contig11462:2557..6004- (Laminarionema elsbetiae ELsaHSoW15)
TACTTCTACGAGTCGACGACGGGAGTCTACTACGACCCGCGGAGCAAGCT
CTACTGCAAGGACATGCAGTGGCACAGTCACACCCCGGGGCTGAATCCCG
CCTTCACCCCGGTCGCCCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAG
CAGCAGCAGGGCGGCGGCGAGGCTGGGCAACCATATCCCCTCGCGGGCAA
CCACCTCACCGAGAGTGCGGCAGCAGCCGGAGGACCAACGGCAGCGGCAG
CGGCGGCAGCGGGCGCTTCGGCGGCGGCGGCCCCTGCATCGGCCCCCGCC
AAAGCTGCCGGCGTGAAGCGGGGCGGGGGCGGCTGGAAGAAGTCCTCGCG
CCTCGCCTTCGGGTTCAAGGGCGCCAAGCTCGGGAAGGCGGGCGGCGGCG
GCGGCGGCGGCGGCGGCGGCGGCGGCGTCGGGGCCAGCGGGGTGCTGGGC
GGTGCCGACAGCGAGAGCTCGGGGGATGAGAACGGCGATGCGACCGGGAG
CAACGGGGCTGCCGCCGCCGCCGCCGCCGCCGCCGCCGCCGTGGGAGTCG
GAGGGGCGCTGGCCAAGAAGCGCCAGCTGCAGGACGTGTCCAAGTGGAAC
GCGAGGAGACGGGAGTACTTCTACGAGTCGACGACGGGAGTCTACTACGA
CCCGCGGAGCAAGCTCTACTGCAAGGACATGCAGTGGCACAGTCACACCC
CGGGGCTGAATCCCGCCTTCACCCCGGTCGCCCAGCAGCAGCAGCAGCAG
CAGCAGCAGCAGCAGCAGCAGCAGGGCGGCGGCGAGGCTGGGCAACCATA
TCCCCTCGCGGGCAACCACCTCACCGAGAGTGCGGCAGCAGCCGGAGGAC
CAACGGCAGCGGCAGCGGCGGCAGCGGGCGCTTCGGCGGCGGCGGCCCCT
GCATCGGCCCCCGCCAAAGCTGCCGGCGTGAAGCGGGGCGGGGGCGGCTG
GAAGAAGTCCTCGCGCCTCGCCTTCGGGTTCAAGGGCGCCAAGCTCGGGA
AGGCGGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGGCGTCGGGGCC
AGCGGGGTGCTGGGCGGTGCCGACAGCGAGAGCTCGGGGGATGAGAACGG
CGATGCGACCGGGAGCAACGGGGCTGCCGCCGCCGCCGCCGCCGCCGCCG
CCGCCGTGGGAGTCGGAGGGGCGCTGGCCAAGAAGCGCCAGCTGCAGGAC
GTGTCCAAGTGGAACGCGAGGAGACGGGAGGCGCAGCAAGGCGAAGCGGG
CACCAACGGCGTCGGGGTGTCCGCCCAGCCTCTGCACATCGCCCCCCGCG
GGCGCCAGCAGCAGCAGCCGCCGCAAGCCACCCCCTCGTCGTACGACCCA
CCCGCCCCGCTGCTGGCCCCCCCATCGTACGACCCCCCCGCCCCGCGCAG
CAAGGCGAAGCGGGCACCAACGGCGTCGGGGTGTCCGCCCAGCCTCTGCA
CATCGCCCCCCGCGGGCGCCAGCAGCAGCAGCCGCCGCAAGCCACCCCCT
CGTCGTACGACCCACCCGCCCCGCTGCTGGCCCCCCCATCGTACGACCCC
CCCGCCCCGGGCTCGGCGAGCGGTGGGGCGGAGGTGGGCGGCAGGGGCCC
GGGAGGGGGAAGAGGAGGAGGAGGAGAGGGGGGGTCAAGAAAAAAGGGGG
ATGGGTCGGGCCCTCCTTCTGCGGCTGGTGGCGTGGGGGCGGGGGCGGGG
GCGGGGGCAAGGAGCGATTCTTCGGTGGCGGGGGGGGCGGTTGTCGTGGC
GTGTCTGGGGCTCGGCGAGCGGTGGGGCGGAGGTGGGCGGCAGGGGCCCG
GGAGGGGGAAGAGGAGGAGGAGGAGAGGGGGGGTCAAGAAAAAAGGGGGA
TGGGTCGGGCCCTCCTTCTGCGGCTGGTGGCGTGGGGGCGGGGGCGGGGG
CGGGGGCAAGGAGCGATTCTTCGGTGGCGGGGGGGGCGGTTGTCGTGGCG
TGTCTGCTCTGCCGCCGGTCGTTCGGCTCTCCGGAGATGCTCCGCAAGCA
CGAGAAAAAGTCCAAGCTCCACAAGCAGAACCTCCTCGCCGCGGCCGCCG
CGGCAAGAGGAGGGGGCGACGGCGACGGCGTGCATGGCTCGCAGGCGGCA
GGGGGCGGGGGGCTCTGCCGCCGGTCGTTCGGCTCTCCGGAGATGCTCCG
CAAGCACGAGAAAAAGTCCAAGCTCCACAAGCAGAACCTCCTCGCCGCGG
CCGCCGCGGCAAGAGGAGGGGGCGACGGCGACGGCGTGCATGGCTCGCAG
GCGGCAGGGGGCGGGGGG
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