prot_L-elsbetiae_contig11462.1283.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig11462.1283.1
Unique Nameprot_L-elsbetiae_contig11462.1283.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length378
Homology
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BLAST of mRNA_L-elsbetiae_contig11462.1283.1 vs. uniprot
Match: D7G7L5_ECTSI (RanBP, RRM1, C2H2 zinc finger protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7G7L5_ECTSI)

HSP 1 Score: 165 bits (418), Expect = 1.080e-41
Identity = 148/253 (58.50%), Postives = 161/253 (63.64%), Query Frame = 0 
Query:    1 YFYESTTGVYYDPRSKLYCKDMQWHSHTPGLNPAFTPVAQXXXXXXXXXXXXXXXXEAGQPYPLAGNHLTESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWKKSS-RLAFGFKGAKLGKAXXXXXXXXXXXXXXXXXXXXGADSESSGDENGDATXXXXXXXXXXXXXXXVGVGGALAKKRQLQDVSKWNARRREAQQGEAG--TNGVGVSAQPLHIAPRGRQQQQPPQATPSSYDPPAPLL 250
            YFYESTTGVYYDPRSKLYCK M W+SHTPG +PAF PV+Q                +A        +           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWKKSS RLAFGFKGAKL KA                    GADS+SSGD++G                  VGVGGALAKKRQL+DVSKWNAR+ EAQQGE G  +NG   +AQPLHIAPR +QQ   PQAT  SYDPPAPLL
Sbjct:  374 YFYESTTGVYYDPRSKLYCKGMVWYSHTPGQDPAFNPVSQQGGT------------DARSSLANGASEGVSVGDATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXWKKSSSRLAFGFKGAKLAKAAAGGGGVGASGVLG------GADSDSSGDDSGGEVAAGVGRGTVGGG---VGVGGALAKKRQLEDVSKWNARKLEAQQGEGGGASNGTKAAAQPLHIAPRRQQQPSAPQAT-ISYDPPAPLL 604
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11462.1283.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7G7L5_ECTSI1.080e-4158.50RanBP, RRM1, C2H2 zinc finger protein n=2 Tax=Ecto... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR13948RNA-BINDING PROTEINcoord: 1..359
NoneNo IPR availablePANTHERPTHR13948:SF3RNA BINDING MOTIF PROTEIN HOMOLOGcoord: 1..359

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11462contigL-elsbetiae_contig11462:2557..6004 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11462.1283.1mRNA_L-elsbetiae_contig11462.1283.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig11462 2557..6004 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig11462.1283.1 ID=prot_L-elsbetiae_contig11462.1283.1|Name=mRNA_L-elsbetiae_contig11462.1283.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=378bp
YFYESTTGVYYDPRSKLYCKDMQWHSHTPGLNPAFTPVAQQQQQQQQQQQ
QQQGGGEAGQPYPLAGNHLTESAAAAGGPTAAAAAAAGASAAAAPASAPA
KAAGVKRGGGGWKKSSRLAFGFKGAKLGKAGGGGGGGGGGGGVGASGVLG
GADSESSGDENGDATGSNGAAAAAAAAAAAVGVGGALAKKRQLQDVSKWN
ARRREAQQGEAGTNGVGVSAQPLHIAPRGRQQQQPPQATPSSYDPPAPLL
APPSYDPPAPGSASGGAEVGGRGPGGGRGGGGEGGSRKKGDGSGPPSAAG
GVGAGAGAGARSDSSVAGGAVVVACLLCRRSFGSPEMLRKHEKKSKLHKQ
NLLAAAAAARGGGDGDGVHGSQAAGGGG
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