mRNA_L-elsbetiae_contig1145.1274.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1145.1274.1
Unique NamemRNA_L-elsbetiae_contig1145.1274.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig1145.1274.1 vs. uniprot
Match: D8LB77_ECTSI (SHR-BD domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB77_ECTSI)

HSP 1 Score: 157 bits (398), Expect = 2.900e-42
Identity = 83/125 (66.40%), Postives = 94/125 (75.20%), Query Frame = 1 
Query:    1 VSVAIPPTTFDRTKRVVDRHSQTMLMNGVSVERADLAPTPGLVMHGSGDDPPALWRLYARAPYVIQNGLACDIVVWASQPEAQDAGASGVDAGLGAPG----GAAGASPPRADAMKRRLRLNSFG 363
            VSV I P TFDR KRVV+RHSQ ML+NGVSVERADLAPTPGLVMHGSGDD PALWRLY RAPYV+QNGLACD+VVWASQP A++  A+ +D  L +PG    G  G S     ++K RL L   G
Sbjct: 1292 VSVEISPNTFDRNKRVVERHSQGMLVNGVSVERADLAPTPGLVMHGSGDDAPALWRLYTRAPYVVQNGLACDVVVWASQPLAEEGNAT-LDTVLESPGPASSGGGGLSASAGRSLKGRLSLKKLG 1415
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1145.1274.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D8LB77_ECTSI2.900e-4266.40SHR-BD domain-containing protein n=1 Tax=Ectocarpu... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1145contigL-elsbetiae_contig1145:26798..27383 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score158.7
Seed ortholog evalue1.7e-36
Seed eggNOG ortholog2880.D8LB77
KEGG koko:K20476
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Rab guanyl-nucleotide exchange factor activity
EggNOG OGsKOG2006@1,KOG2006@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko04131
Exons2
Model size367
Cds size366
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815352.26697-CDS-L-elsbetiae_contig1145:26797..268651622815352.26697-CDS-L-elsbetiae_contig1145:26797..26865Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1145 26798..26865 +
1691682855.6578417-CDS-L-elsbetiae_contig1145:26797..268651691682855.6578417-CDS-L-elsbetiae_contig1145:26797..26865Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1145 26798..26865 +
1622815352.2760239-CDS-L-elsbetiae_contig1145:27085..273831622815352.2760239-CDS-L-elsbetiae_contig1145:27085..27383Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1145 27086..27383 +
1691682855.6731522-CDS-L-elsbetiae_contig1145:27085..273831691682855.6731522-CDS-L-elsbetiae_contig1145:27085..27383Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1145 27086..27383 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1145.1274.1prot_L-elsbetiae_contig1145.1274.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1145 26798..27383 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1145.1274.1

>prot_L-elsbetiae_contig1145.1274.1 ID=prot_L-elsbetiae_contig1145.1274.1|Name=mRNA_L-elsbetiae_contig1145.1274.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=122bp
VSVAIPPTTFDRTKRVVDRHSQTMLMNGVSVERADLAPTPGLVMHGSGDD
PPALWRLYARAPYVIQNGLACDIVVWASQPEAQDAGASGVDAGLGAPGGA
AGASPPRADAMKRRLRLNSFG*
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mRNA from alignment at L-elsbetiae_contig1145:26798..27383+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1145.1274.1 ID=mRNA_L-elsbetiae_contig1145.1274.1|Name=mRNA_L-elsbetiae_contig1145.1274.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=586bp|location=Sequence derived from alignment at L-elsbetiae_contig1145:26798..27383+ (Laminarionema elsbetiae ELsaHSoW15)
GTGTCGGTCGCCATTCCGCCGACGACGTTCGACAGGACCAAGAGAGTGGT
GGATAGGCACTCCCAAACGTGAGCGCAAACGTCTTTTTTGTCTGTTCTAT
CGTCTCCGCTGGAGGGAGGGGGACTGTCCCGTCTGTCTGGCTTCGGAGCC
CACCCCACCGCGGGATAGCAAAACATATTTCAAGCACGCGTACATACGAT
GAAACACGGCTTGCGTACCCCCCTCCCCCCGCCCACGCACACCTTTCGAC
GGTCCGCGTTTTTTCTTTCGCTATACTTTTCGCCGCAGCATGCTGATGAA
TGGCGTCTCGGTGGAGCGTGCAGACCTCGCCCCCACGCCGGGGCTCGTGA
TGCACGGCTCCGGGGACGACCCCCCCGCCCTGTGGCGGCTGTACGCGCGC
GCGCCCTACGTTATTCAGAACGGCCTCGCGTGCGACATCGTGGTGTGGGC
GTCGCAGCCGGAGGCACAAGACGCGGGTGCCAGCGGCGTGGACGCCGGGT
TAGGGGCCCCCGGAGGCGCCGCCGGTGCCAGCCCACCCCGCGCCGACGCC
ATGAAACGGCGCTTAAGGCTGAACAGCTTCGGGTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1145:26798..27383+

>mRNA_L-elsbetiae_contig1145.1274.1 ID=mRNA_L-elsbetiae_contig1145.1274.1|Name=mRNA_L-elsbetiae_contig1145.1274.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=732bp|location=Sequence derived from alignment at L-elsbetiae_contig1145:26798..27383+ (Laminarionema elsbetiae ELsaHSoW15)
GTGTCGGTCGCCATTCCGCCGACGACGTTCGACAGGACCAAGAGAGTGGT
GGATAGGCACTCCCAAACGTGTCGGTCGCCATTCCGCCGACGACGTTCGA
CAGGACCAAGAGAGTGGTGGATAGGCACTCCCAAACCATGCTGATGAATG
GCGTCTCGGTGGAGCGTGCAGACCTCGCCCCCACGCCGGGGCTCGTGATG
CACGGCTCCGGGGACGACCCCCCCGCCCTGTGGCGGCTGTACGCGCGCGC
GCCCTACGTTATTCAGAACGGCCTCGCGTGCGACATCGTGGTGTGGGCGT
CGCAGCCGGAGGCACAAGACGCGGGTGCCAGCGGCGTGGACGCCGGGTTA
GGGGCCCCCGGAGGCGCCGCCGGTGCCAGCCCACCCCGCGCCGACGCCAT
GAAACGGCGCTTAAGGCTGAACAGCTTCGGGTGACATGCTGATGAATGGC
GTCTCGGTGGAGCGTGCAGACCTCGCCCCCACGCCGGGGCTCGTGATGCA
CGGCTCCGGGGACGACCCCCCCGCCCTGTGGCGGCTGTACGCGCGCGCGC
CCTACGTTATTCAGAACGGCCTCGCGTGCGACATCGTGGTGTGGGCGTCG
CAGCCGGAGGCACAAGACGCGGGTGCCAGCGGCGTGGACGCCGGGTTAGG
GGCCCCCGGAGGCGCCGCCGGTGCCAGCCCACCCCGCGCCGACGCCATGA
AACGGCGCTTAAGGCTGAACAGCTTCGGGTGA
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