mRNA_L-elsbetiae_contig1145.1270.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1145.1270.1
Unique NamemRNA_L-elsbetiae_contig1145.1270.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig1145.1270.1 vs. uniprot
Match: A0A6H5K9E5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K9E5_9PHAE)

HSP 1 Score: 124 bits (311), Expect = 4.530e-31
Identity = 65/79 (82.28%), Postives = 71/79 (89.87%), Query Frame = 1 
Query:   40 HAAGGTTEIGLALYTGGRLELGLNFDSCTVVALPGRIVSIIDVVLACLMGPPAAREAQELNALEDEVEMEEAEEATGGV 276
            HAAGGTT+  LAL+ GGRLE GL+F SCTVVALPGRI++IIDVVLACLMGPPAAREAQELNALE+EVE EE  EATGGV
Sbjct:  881 HAAGGTTKATLALFVGGRLEAGLDFQSCTVVALPGRIMAIIDVVLACLMGPPAAREAQELNALEEEVEAEEXXEATGGV 959
[Close]
BLAST of mRNA_L-elsbetiae_contig1145.1270.1 vs. uniprot
Match: D8LB75_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LB75_ECTSI)

HSP 1 Score: 124 bits (311), Expect = 4.580e-31
Identity = 65/79 (82.28%), Postives = 71/79 (89.87%), Query Frame = 1 
Query:   40 HAAGGTTEIGLALYTGGRLELGLNFDSCTVVALPGRIVSIIDVVLACLMGPPAAREAQELNALEDEVEMEEAEEATGGV 276
            HAAGGTT+  LAL+ GGRLE GL+F SCTVVALPGRI++IIDVVLACLMGPPAAREAQELNALE+EVE EE  EATGGV
Sbjct:  850 HAAGGTTKATLALFVGGRLEAGLDFQSCTVVALPGRIMAIIDVVLACLMGPPAAREAQELNALEEEVEAEEXXEATGGV 928
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1145.1270.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5K9E5_9PHAE4.530e-3182.28Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LB75_ECTSI4.580e-3182.28Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1145contigL-elsbetiae_contig1145:9967..10244 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score124.4
Seed ortholog evalue2.7e-26
Seed eggNOG ortholog2880.D8LB75
KEGG rclassRC00055,RC00523
KEGG koko:K01870,ko:K02183,ko:K12486
KEGG ReactionR03656
KEGG Pathwayko00970,ko04014,ko04015,ko04016,ko04020,ko04022,ko04024,ko04070,ko04114,ko04144,ko04218,ko04261,ko04270,ko04371,ko04626,ko04713,ko04720,ko04722,ko04728,ko04740,ko04744,ko04745,ko04750,ko04910,ko04912,ko04915,ko04916,ko04921,ko04922,ko04924,ko04925,ko04970,ko04971,ko05010,ko05031,ko05034,ko05133,ko05152,ko05167,ko05200,ko05214,ko05418,map00970,map04014,map04015,map04016,map04020,map04022,map04024,map04070,map04114,map04144,map04218,map04261,map04270,map04371,map04626,map04713,map04720,map04722,map04728,map04740,map04744,map04745,map04750,map04910,map04912,map04915,map04916,map04921,map04922,map04924,map04925,map04970,map04971,map05010,map05031,map05034,map05133,map05152,map05167,map05200,map05214,map05418
KEGG ModuleM00359,M00360
Hectar predicted targeting categoryother localisation
EggNOG free text desc.Ca2 -binding protein (EF-Hand superfamily
EggNOG OGsCOG5043@1,COG5126@1,KOG0027@2759,KOG1809@2759
EC6.1.1.5
COG Functional cat.DTZ
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000,ko01007,ko01009,ko03016,ko03036,ko04131,ko04147
Exons1
Model size278
Cds size276
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815351.4511383-CDS-L-elsbetiae_contig1145:9966..102421622815351.4511383-CDS-L-elsbetiae_contig1145:9966..10242Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1145 9967..10242 +
1691682855.4625254-CDS-L-elsbetiae_contig1145:9966..102421691682855.4625254-CDS-L-elsbetiae_contig1145:9966..10242Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1145 9967..10242 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1145.1270.1prot_L-elsbetiae_contig1145.1270.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1145 9967..10242 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1145.1270.1

>prot_L-elsbetiae_contig1145.1270.1 ID=prot_L-elsbetiae_contig1145.1270.1|Name=mRNA_L-elsbetiae_contig1145.1270.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=92bp
AAGAGGGGGDDASHAAGGTTEIGLALYTGGRLELGLNFDSCTVVALPGRI
VSIIDVVLACLMGPPAAREAQELNALEDEVEMEEAEEATGGV
back to top

mRNA from alignment at L-elsbetiae_contig1145:9967..10244+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1145.1270.1 ID=mRNA_L-elsbetiae_contig1145.1270.1|Name=mRNA_L-elsbetiae_contig1145.1270.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=278bp|location=Sequence derived from alignment at L-elsbetiae_contig1145:9967..10244+ (Laminarionema elsbetiae ELsaHSoW15)
GCTGCGGGTGCCGGCGGCGGCGGCGGCGACGACGCCTCACACGCGGCGGG
AGGGACGACCGAGATCGGCCTCGCGCTCTACACCGGGGGCCGTCTCGAGC
TCGGCCTTAACTTCGACAGCTGCACCGTCGTGGCCCTGCCGGGGAGGATC
GTGTCTATCATCGACGTGGTCCTCGCGTGCCTCATGGGGCCGCCCGCGGC
CCGCGAGGCGCAGGAGCTGAACGCCCTGGAGGACGAGGTGGAGATGGAGG
AGGCCGAGGAGGCCACCGGCGGCGTCGG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig1145:9967..10244+

>mRNA_L-elsbetiae_contig1145.1270.1 ID=mRNA_L-elsbetiae_contig1145.1270.1|Name=mRNA_L-elsbetiae_contig1145.1270.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=552bp|location=Sequence derived from alignment at L-elsbetiae_contig1145:9967..10244+ (Laminarionema elsbetiae ELsaHSoW15)
GCTGCGGGTGCCGGCGGCGGCGGCGGCGACGACGCCTCACACGCGGCGGG
AGGGACGACCGAGATCGGCCTCGCGCTCTACACCGGGGGCCGTCTCGAGC
TCGGCCTTAACTTCGACAGCTGCACCGTCGTGGCCCTGCCGGGGAGGATC
GTGTCTATCATCGACGTGGTCCTCGCGTGCCTCATGGGGCCGCCCGCGGC
CCGCGAGGCGCAGGAGCTGAACGCCCTGGAGGACGAGGTGGAGATGGAGG
AGGCCGAGGAGGCCACCGGCGGCGTCGCTGCGGGTGCCGGCGGCGGCGGC
GGCGACGACGCCTCACACGCGGCGGGAGGGACGACCGAGATCGGCCTCGC
GCTCTACACCGGGGGCCGTCTCGAGCTCGGCCTTAACTTCGACAGCTGCA
CCGTCGTGGCCCTGCCGGGGAGGATCGTGTCTATCATCGACGTGGTCCTC
GCGTGCCTCATGGGGCCGCCCGCGGCCCGCGAGGCGCAGGAGCTGAACGC
CCTGGAGGACGAGGTGGAGATGGAGGAGGCCGAGGAGGCCACCGGCGGCG
TC
back to top