mRNA_L-elsbetiae_contig11437.1255.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11437.1255.1
Unique NamemRNA_L-elsbetiae_contig11437.1255.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11437.1255.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11437contigL-elsbetiae_contig11437:3189..5051 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size1347
Cds size1065
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11437.1255.1prot_L-elsbetiae_contig11437.1255.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11437 3272..4852 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815350.628742-UTR-L-elsbetiae_contig11437:3188..32711622815350.628742-UTR-L-elsbetiae_contig11437:3188..3271Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11437 3189..3271 +
1691682855.0143237-UTR-L-elsbetiae_contig11437:3188..32711691682855.0143237-UTR-L-elsbetiae_contig11437:3188..3271Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11437 3189..3271 +
1622815350.6744163-UTR-L-elsbetiae_contig11437:4852..50511622815350.6744163-UTR-L-elsbetiae_contig11437:4852..5051Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11437 4853..5051 +
1691682855.0592399-UTR-L-elsbetiae_contig11437:4852..50511691682855.0592399-UTR-L-elsbetiae_contig11437:4852..5051Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig11437 4853..5051 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815350.6378248-CDS-L-elsbetiae_contig11437:3271..33501622815350.6378248-CDS-L-elsbetiae_contig11437:3271..3350Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11437 3272..3350 +
1691682855.02562-CDS-L-elsbetiae_contig11437:3271..33501691682855.02562-CDS-L-elsbetiae_contig11437:3271..3350Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11437 3272..3350 +
1622815350.650718-CDS-L-elsbetiae_contig11437:3460..43761622815350.650718-CDS-L-elsbetiae_contig11437:3460..4376Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11437 3461..4376 +
1691682855.036075-CDS-L-elsbetiae_contig11437:3460..43761691682855.036075-CDS-L-elsbetiae_contig11437:3460..4376Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11437 3461..4376 +
1622815350.662171-CDS-L-elsbetiae_contig11437:4782..48521622815350.662171-CDS-L-elsbetiae_contig11437:4782..4852Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11437 4783..4852 +
1691682855.0463579-CDS-L-elsbetiae_contig11437:4782..48521691682855.0463579-CDS-L-elsbetiae_contig11437:4782..4852Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11437 4783..4852 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11437.1255.1

>prot_L-elsbetiae_contig11437.1255.1 ID=prot_L-elsbetiae_contig11437.1255.1|Name=mRNA_L-elsbetiae_contig11437.1255.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=355bp
MINVAKRRRKRCADPGCDKQPSYGVEGSRTAAFCAPHAKEGMVDIWGKVC
AHSGCSKYPSYGVQGSKMREFCAPHAGEGMVHVANSNKKKCAHPGCKKHP
VYGVEGSTVAEFCSPHAEEGMVDIKSKRCAQPGCNKLPSYGTQASKRREF
CVGHAEEGMVNVFQKKNRKRCAHPGCNKCPSDGVQGSKRAEFCAGHVEEG
MVCVHGRKKKCADPGSNKWPSYGVEGSNKRGVCAAHAQEGMMDVRSWGKN
KRCVHLGCQDLACPHLQVDPCSVSERAKQARQAAEEELFVARSAGREAAR
ERPTPEEGHCPAVVKTEGHDMLMLSGAAKAVRRTTGGNKMRHRVGAASPS
NTFL*
back to top

mRNA from alignment at L-elsbetiae_contig11437:3189..5051+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11437.1255.1 ID=mRNA_L-elsbetiae_contig11437.1255.1|Name=mRNA_L-elsbetiae_contig11437.1255.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1863bp|location=Sequence derived from alignment at L-elsbetiae_contig11437:3189..5051+ (Laminarionema elsbetiae ELsaHSoW15)
ACCTTGGTTGCAGCAAATGGCCGTCGGACGGTGTACAAGGCAGCAAGAGG GCTGAGTTCTGCGCTGGACACGCGGAGGAAGGAATGATAAATGTCGCCAA AAGGAGGAGGAAGAGGTGTGCCGACCCTGGTTGCGACAAGCAACCCTCGT ATGGCGTGGAAGGTAGCAAGACGGCTGTGTTCTGCGCTCCACACGCGGAG GAGGGAATGGTGAACATCTGGGAAAAGAGGTGTGCCCATCCTGGTTGCGA TGGCCGTCGTATGGCGTGAAAGGCAGCAGGACCGCTGCGTTCTGCGCTCC GCACGCGAAGGAGGGAATGGTGGACATCTGGGGGAAGGTGTGTGCCCATT CTGGTTGCAGCAAGTACCCATCATACGGTGTGCAAGGTAGCAAGATGCGT GAGTTCTGCGCGCCACACGCGGGGGAGGGGATGGTGCACGTCGCCAACAG CAATAAGAAGAAGTGTGCCCACCCTGGTTGCAAAAAGCATCCGGTGTACG GCGTGGAAGGCAGCACAGTGGCCGAGTTCTGCTCCCCACACGCGGAGGAG GGGATGGTGGACATCAAGAGTAAGAGGTGCGCCCAACCTGGTTGCAACAA ACTGCCGTCGTACGGCACGCAAGCCAGCAAGAGGCGTGAGTTCTGCGTTG GACACGCGGAGGAGGGGATGGTGAATGTTTTCCAGAAGAAAAACCGTAAG AGATGTGCCCACCCAGGGTGCAACAAGTGCCCGTCGGACGGTGTACAAGG CAGCAAGAGGGCTGAGTTCTGTGCTGGGCACGTAGAGGAGGGGATGGTGT GCGTCCATGGCAGGAAGAAGAAGTGTGCCGACCCTGGTAGCAACAAATGG CCGTCGTATGGCGTGGAAGGTAGCAACAAGAGGGGCGTCTGTGCTGCACA TGCGCAGGAGGGCATGATGGACGTCCGGAGCTGGGGCAAAAATAAGAGGT GTGTTCACCTAGGGTGCCAGGACCTGGCCTGTCCTCATCTGCAAGTAGAT CCCTGTTCGGTAAGCGAGCGCGCCAAGCAAGCAAGGCAGGCTGCTGAAGA AGAGCTGTTTGTGGCGCGGAGTGCAGGGCGAGAAGCCGCGCGTGAACGGC CTACTCCAGAGGAAGGACACTGCCCCGCTGTGGTGAAGACGGAAGGGCAC GACATGCTGATGCTGTCGGGCGCAGCGAAAGCTGTGAGGTACGTTGTATT GTGCACTCTGTTGTTTTTCTTGCGTGCTCCACCTTCGCGTAGAGCACGTG ATCCCGCCGGCGCTGTTTGACCAAATCACTTCGCAGGCAACTTTTGCACG CTTTCCTGTCTTGCGTTTTTGCCATGCCTTGAAGAGGTCGAGCGCCTTAG GCGCATTTTGCAATGCTGGCACGTGCTGGTTTGGCCGGCTGTCCCAGCTT TTGGGGGCGGGCGGAAAGGTTCCCTCTGCTCCCTAATTTACTGAAATTCT ACGGCCGACAACCTTCATATGCTCACCAGGTCGTAACTTTGCTTTGCTCC ACGTAGTCACTGTTACACGTCTAGATACGCCTGTGCCACTGATTAATGAG ATCGGTTCCGCTCTTGTTTTGTGCTCTGGGTTGCCCGTGGTCAGACGAAC TACGGGTGGAAACAAGATGAGACACCGGGTTGGAGCAGCATCCCCGAGTA ATACGTTCCTGTGACTCTGTCAGGCGAAGGGCATACGTGATTCTGAATGG GTGGATACCAGTAGAACTCTGCCATCCCCTGTGTGCACAAGCACCTCGTC CTATGTGGATTGGTTTGACGTGTAGTGTGATAATAATCGCCAGAAGATGA TCGATGGTCGACCATAATGTTAACGGGCCGCTGATGACGTTAAGAAGGCC ACTTTTTCTCAAG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig11437:3189..5051+

>mRNA_L-elsbetiae_contig11437.1255.1 ID=mRNA_L-elsbetiae_contig11437.1255.1|Name=mRNA_L-elsbetiae_contig11437.1255.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2130bp|location=Sequence derived from alignment at L-elsbetiae_contig11437:3189..5051+ (Laminarionema elsbetiae ELsaHSoW15)
ATGATAAATGTCGCCAAAAGGAGGAGGAAGAGGTGTGCCGACCCTGGTTG
CGACAAGCAACCCTCGTATGGCGTGGAAGATGATAAATGTCGCCAAAAGG
AGGAGGAAGAGGTGTGCCGACCCTGGTTGCGACAAGCAACCCTCGTATGG
CGTGGAAGGCAGCAGGACCGCTGCGTTCTGCGCTCCGCACGCGAAGGAGG
GAATGGTGGACATCTGGGGGAAGGTGTGTGCCCATTCTGGTTGCAGCAAG
TACCCATCATACGGTGTGCAAGGTAGCAAGATGCGTGAGTTCTGCGCGCC
ACACGCGGGGGAGGGGATGGTGCACGTCGCCAACAGCAATAAGAAGAAGT
GTGCCCACCCTGGTTGCAAAAAGCATCCGGTGTACGGCGTGGAAGGCAGC
ACAGTGGCCGAGTTCTGCTCCCCACACGCGGAGGAGGGGATGGTGGACAT
CAAGAGTAAGAGGTGCGCCCAACCTGGTTGCAACAAACTGCCGTCGTACG
GCACGCAAGCCAGCAAGAGGCGTGAGTTCTGCGTTGGACACGCGGAGGAG
GGGATGGTGAATGTTTTCCAGAAGAAAAACCGTAAGAGATGTGCCCACCC
AGGGTGCAACAAGTGCCCGTCGGACGGTGTACAAGGCAGCAAGAGGGCTG
AGTTCTGTGCTGGGCACGTAGAGGAGGGGATGGTGTGCGTCCATGGCAGG
AAGAAGAAGTGTGCCGACCCTGGTAGCAACAAATGGCCGTCGTATGGCGT
GGAAGGTAGCAACAAGAGGGGCGTCTGTGCTGCACATGCGCAGGAGGGCA
TGATGGACGTCCGGAGCTGGGGCAAAAATAAGAGGTGTGTTCACCTAGGG
TGCCAGGACCTGGCCTGTCCTCATCTGCAAGTAGATCCCTGTTCGGTAAG
CGAGCGCGCCAAGCAAGCAAGGCAGGCTGCTGAAGAAGAGCTGTTTGTGG
CGCGGAGTGCAGGGCGAGAAGCCGCGCGTGAACGGCCTACTCCAGAGGAA
GGACACTGCCCCGCTGTGGTGAAGACGGAAGGGCACGACATGCTGATGCT
GTCGGGCGCAGCGAAAGCTGTGAGGCAGCAGGACCGCTGCGTTCTGCGCT
CCGCACGCGAAGGAGGGAATGGTGGACATCTGGGGGAAGGTGTGTGCCCA
TTCTGGTTGCAGCAAGTACCCATCATACGGTGTGCAAGGTAGCAAGATGC
GTGAGTTCTGCGCGCCACACGCGGGGGAGGGGATGGTGCACGTCGCCAAC
AGCAATAAGAAGAAGTGTGCCCACCCTGGTTGCAAAAAGCATCCGGTGTA
CGGCGTGGAAGGCAGCACAGTGGCCGAGTTCTGCTCCCCACACGCGGAGG
AGGGGATGGTGGACATCAAGAGTAAGAGGTGCGCCCAACCTGGTTGCAAC
AAACTGCCGTCGTACGGCACGCAAGCCAGCAAGAGGCGTGAGTTCTGCGT
TGGACACGCGGAGGAGGGGATGGTGAATGTTTTCCAGAAGAAAAACCGTA
AGAGATGTGCCCACCCAGGGTGCAACAAGTGCCCGTCGGACGGTGTACAA
GGCAGCAAGAGGGCTGAGTTCTGTGCTGGGCACGTAGAGGAGGGGATGGT
GTGCGTCCATGGCAGGAAGAAGAAGTGTGCCGACCCTGGTAGCAACAAAT
GGCCGTCGTATGGCGTGGAAGGTAGCAACAAGAGGGGCGTCTGTGCTGCA
CATGCGCAGGAGGGCATGATGGACGTCCGGAGCTGGGGCAAAAATAAGAG
GTGTGTTCACCTAGGGTGCCAGGACCTGGCCTGTCCTCATCTGCAAGTAG
ATCCCTGTTCGGTAAGCGAGCGCGCCAAGCAAGCAAGGCAGGCTGCTGAA
GAAGAGCTGTTTGTGGCGCGGAGTGCAGGGCGAGAAGCCGCGCGTGAACG
GCCTACTCCAGAGGAAGGACACTGCCCCGCTGTGGTGAAGACGGAAGGGC
ACGACATGCTGATGCTGTCGGGCGCAGCGAAAGCTGTGAGACGAACTACG
GGTGGAAACAAGATGAGACACCGGGTTGGAGCAGCATCCCCGAGTAATAC
GTTCCTGTGAACGAACTACGGGTGGAAACAAGATGAGACACCGGGTTGGA
GCAGCATCCCCGAGTAATACGTTCCTGTGA
back to top