mRNA_L-elsbetiae_contig11436.1254.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11436.1254.1
Unique NamemRNA_L-elsbetiae_contig11436.1254.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig11436.1254.1 vs. uniprot
Match: D7FUF2_ECTSI (PHD-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUF2_ECTSI)

HSP 1 Score: 112 bits (281), Expect = 1.730e-26
Identity = 47/71 (66.20%), Postives = 54/71 (76.06%), Query Frame = 1 
Query:  166 GVACRQCRRPRSGSTKSGGKTCGTCGGWWHKSASCAGVNGCPESGKWVGGWRCRWCLSTWEKGLKVRSDEV 378
            G  C +C++ RSGS KS GKTCGTCG WWH S  C G  GCPESG+WVGGWRCR CLS WEKGL+ R+ +V
Sbjct:  363 GTVCFKCKKKRSGSNKSSGKTCGTCGRWWHNSVHCCGAYGCPESGEWVGGWRCRHCLSLWEKGLRDRAAKV 433
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11436.1254.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FUF2_ECTSI1.730e-2666.20PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11436contigL-elsbetiae_contig11436:5368..5745 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size379
Cds size378
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815350.5713418-CDS-L-elsbetiae_contig11436:5367..57451622815350.5713418-CDS-L-elsbetiae_contig11436:5367..5745Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11436 5368..5745 +
1691682854.9918244-CDS-L-elsbetiae_contig11436:5367..57451691682854.9918244-CDS-L-elsbetiae_contig11436:5367..5745Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11436 5368..5745 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11436.1254.1prot_L-elsbetiae_contig11436.1254.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11436 5368..5745 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11436.1254.1

>prot_L-elsbetiae_contig11436.1254.1 ID=prot_L-elsbetiae_contig11436.1254.1|Name=mRNA_L-elsbetiae_contig11436.1254.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=126bp
AEGGSAPRRRHSSSSGGGGGGGGGGCEEAVLREPRQAGRRQRNSTGGKAR
TCTATGVACRQCRRPRSGSTKSGGKTCGTCGGWWHKSASCAGVNGCPESG
KWVGGWRCRWCLSTWEKGLKVRSDEV
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mRNA from alignment at L-elsbetiae_contig11436:5368..5745+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11436.1254.1 ID=mRNA_L-elsbetiae_contig11436.1254.1|Name=mRNA_L-elsbetiae_contig11436.1254.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=378bp|location=Sequence derived from alignment at L-elsbetiae_contig11436:5368..5745+ (Laminarionema elsbetiae ELsaHSoW15)
GCAGAAGGAGGATCAGCACCGCGTCGCCGGCACTCGTCGAGCAGCGGCGG
CGGCGGCGGCGGCGGCGGTGGCGGTTGTGAAGAAGCGGTGTTGCGTGAGC
CCCGTCAGGCCGGTCGACGGCAGAGGAACTCGACGGGTGGCAAGGCTCGC
ACCTGTACCGCCACCGGAGTCGCGTGCCGCCAATGCAGGAGGCCGCGGAG
CGGCTCGACGAAGTCGGGCGGAAAGACGTGCGGCACGTGCGGTGGCTGGT
GGCACAAGTCGGCCAGCTGCGCGGGGGTGAACGGCTGCCCGGAGTCCGGG
AAGTGGGTAGGCGGCTGGCGGTGTCGGTGGTGCCTCTCCACCTGGGAGAA
GGGCCTCAAGGTCCGCTCGGATGAGGTG
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11436:5368..5745+

>mRNA_L-elsbetiae_contig11436.1254.1 ID=mRNA_L-elsbetiae_contig11436.1254.1|Name=mRNA_L-elsbetiae_contig11436.1254.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=756bp|location=Sequence derived from alignment at L-elsbetiae_contig11436:5368..5745+ (Laminarionema elsbetiae ELsaHSoW15)
GCAGAAGGAGGATCAGCACCGCGTCGCCGGCACTCGTCGAGCAGCGGCGG
CGGCGGCGGCGGCGGCGGTGGCGGTTGTGAAGAAGCGGTGTTGCGTGAGC
CCCGTCAGGCCGGTCGACGGCAGAGGAACTCGACGGGTGGCAAGGCTCGC
ACCTGTACCGCCACCGGAGTCGCGTGCCGCCAATGCAGGAGGCCGCGGAG
CGGCTCGACGAAGTCGGGCGGAAAGACGTGCGGCACGTGCGGTGGCTGGT
GGCACAAGTCGGCCAGCTGCGCGGGGGTGAACGGCTGCCCGGAGTCCGGG
AAGTGGGTAGGCGGCTGGCGGTGTCGGTGGTGCCTCTCCACCTGGGAGAA
GGGCCTCAAGGTCCGCTCGGATGAGGTGGCAGAAGGAGGATCAGCACCGC
GTCGCCGGCACTCGTCGAGCAGCGGCGGCGGCGGCGGCGGCGGCGGTGGC
GGTTGTGAAGAAGCGGTGTTGCGTGAGCCCCGTCAGGCCGGTCGACGGCA
GAGGAACTCGACGGGTGGCAAGGCTCGCACCTGTACCGCCACCGGAGTCG
CGTGCCGCCAATGCAGGAGGCCGCGGAGCGGCTCGACGAAGTCGGGCGGA
AAGACGTGCGGCACGTGCGGTGGCTGGTGGCACAAGTCGGCCAGCTGCGC
GGGGGTGAACGGCTGCCCGGAGTCCGGGAAGTGGGTAGGCGGCTGGCGGT
GTCGGTGGTGCCTCTCCACCTGGGAGAAGGGCCTCAAGGTCCGCTCGGAT
GAGGTG
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