prot_L-elsbetiae_contig11436.1254.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig11436.1254.1
Unique Nameprot_L-elsbetiae_contig11436.1254.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length126
Homology
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BLAST of mRNA_L-elsbetiae_contig11436.1254.1 vs. uniprot
Match: D7FUF2_ECTSI (PHD-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUF2_ECTSI)

HSP 1 Score: 112 bits (281), Expect = 1.730e-26
Identity = 47/71 (66.20%), Postives = 54/71 (76.06%), Query Frame = 0 
Query:   56 GVACRQCRRPRSGSTKSGGKTCGTCGGWWHKSASCAGVNGCPESGKWVGGWRCRWCLSTWEKGLKVRSDEV 126
            G  C +C++ RSGS KS GKTCGTCG WWH S  C G  GCPESG+WVGGWRCR CLS WEKGL+ R+ +V
Sbjct:  363 GTVCFKCKKKRSGSNKSSGKTCGTCGRWWHNSVHCCGAYGCPESGEWVGGWRCRHCLSLWEKGLRDRAAKV 433
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11436.1254.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FUF2_ECTSI1.730e-2666.20PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11436contigL-elsbetiae_contig11436:5368..5745 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11436.1254.1mRNA_L-elsbetiae_contig11436.1254.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig11436 5368..5745 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig11436.1254.1 ID=prot_L-elsbetiae_contig11436.1254.1|Name=mRNA_L-elsbetiae_contig11436.1254.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=126bp
AEGGSAPRRRHSSSSGGGGGGGGGGCEEAVLREPRQAGRRQRNSTGGKAR
TCTATGVACRQCRRPRSGSTKSGGKTCGTCGGWWHKSASCAGVNGCPESG
KWVGGWRCRWCLSTWEKGLKVRSDEV
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