mRNA_L-elsbetiae_contig11436.1253.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11436.1253.1
Unique NamemRNA_L-elsbetiae_contig11436.1253.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig11436.1253.1 vs. uniprot
Match: D7FUF2_ECTSI (PHD-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUF2_ECTSI)

HSP 1 Score: 79.3 bits (194), Expect = 1.800e-14
Identity = 33/56 (58.93%), Postives = 38/56 (67.86%), Query Frame = 1 
Query:  214 CHAC-KVTISSQRPTFSCRTCRKVHHCECVGYTGKKRHFPPPDWICPRCPNGERGP 378
            C AC KV      P+F+CR CRK++H  CVGY  + R  PPPDWICP CP GERGP
Sbjct:  122 CEACGKVFTRDVHPSFACRACRKLYHRSCVGYANRARQSPPPDWICPHCPGGERGP 177
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11436.1253.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FUF2_ECTSI1.800e-1458.93PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11436contigL-elsbetiae_contig11436:4357..4788 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size434
Cds size432
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815350.5998611-CDS-L-elsbetiae_contig11436:4356..47881622815350.5998611-CDS-L-elsbetiae_contig11436:4356..4788Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11436 4357..4788 +
1691682855.0029106-CDS-L-elsbetiae_contig11436:4356..47881691682855.0029106-CDS-L-elsbetiae_contig11436:4356..4788Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11436 4357..4788 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11436.1253.1prot_L-elsbetiae_contig11436.1253.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11436 4357..4788 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11436.1253.1

>prot_L-elsbetiae_contig11436.1253.1 ID=prot_L-elsbetiae_contig11436.1253.1|Name=mRNA_L-elsbetiae_contig11436.1253.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=144bp
MQRSRTEGEGISSPTLAHEATSSPGTPPSEGRGHQPPSPKPCGKRSEVAA
VEDEESEEGLSPLAKSLAKTRCHACKVTISSQRPTFSCRTCRKVHHCECV
GYTGKKRHFPPPDWICPRCPNGERGPDEDKLHGPFKTGPVTQPR
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mRNA from alignment at L-elsbetiae_contig11436:4357..4788+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11436.1253.1 ID=mRNA_L-elsbetiae_contig11436.1253.1|Name=mRNA_L-elsbetiae_contig11436.1253.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=432bp|location=Sequence derived from alignment at L-elsbetiae_contig11436:4357..4788+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCAGCGGTCGAGAACGGAAGGGGAGGGCATTTCATCTCCGACATTGGC
TCATGAGGCAACCTCCTCCCCCGGTACGCCACCATCCGAGGGCCGTGGTC
ACCAGCCACCCAGCCCCAAACCGTGCGGCAAGAGGTCGGAAGTGGCGGCG
GTAGAGGACGAGGAAAGCGAAGAAGGCCTGTCGCCGCTAGCAAAATCTCT
TGCGAAGACACGCTGCCACGCGTGCAAAGTCACAATCAGCTCGCAACGAC
CTACTTTCAGCTGCAGGACTTGCCGCAAGGTACACCACTGCGAGTGCGTC
GGCTACACAGGAAAGAAGAGGCACTTCCCCCCCCCAGACTGGATCTGCCC
CCGCTGCCCCAACGGCGAGCGCGGCCCTGATGAGGACAAACTTCACGGCC
CCTTCAAAACGGGACCGGTGACCCAACCACGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11436:4357..4788+

>mRNA_L-elsbetiae_contig11436.1253.1 ID=mRNA_L-elsbetiae_contig11436.1253.1|Name=mRNA_L-elsbetiae_contig11436.1253.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=864bp|location=Sequence derived from alignment at L-elsbetiae_contig11436:4357..4788+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCAGCGGTCGAGAACGGAAGGGGAGGGCATTTCATCTCCGACATTGGC
TCATGAGGCAACCTCCTCCCCCGGTACGCCACCATCCGAGGGCCGTGGTC
ACCAGCCACCCAGCCCCAAACCGTGCGGCAAGAGGTCGGAAGTGGCGGCG
GTAGAGGACGAGGAAAGCGAAGAAGGCCTGTCGCCGCTAGCAAAATCTCT
TGCGAAGACACGCTGCCACGCGTGCAAAGTCACAATCAGCTCGCAACGAC
CTACTTTCAGCTGCAGGACTTGCCGCAAGGTACACCACTGCGAGTGCGTC
GGCTACACAGGAAAGAAGAGGCACTTCCCCCCCCCAGACTGGATCTGCCC
CCGCTGCCCCAACGGCGAGCGCGGCCCTGATGAGGACAAACTTCACGGCC
CCTTCAAAACGGGACCGGTGACCCAACCACGCATGCAGCGGTCGAGAACG
GAAGGGGAGGGCATTTCATCTCCGACATTGGCTCATGAGGCAACCTCCTC
CCCCGGTACGCCACCATCCGAGGGCCGTGGTCACCAGCCACCCAGCCCCA
AACCGTGCGGCAAGAGGTCGGAAGTGGCGGCGGTAGAGGACGAGGAAAGC
GAAGAAGGCCTGTCGCCGCTAGCAAAATCTCTTGCGAAGACACGCTGCCA
CGCGTGCAAAGTCACAATCAGCTCGCAACGACCTACTTTCAGCTGCAGGA
CTTGCCGCAAGGTACACCACTGCGAGTGCGTCGGCTACACAGGAAAGAAG
AGGCACTTCCCCCCCCCAGACTGGATCTGCCCCCGCTGCCCCAACGGCGA
GCGCGGCCCTGATGAGGACAAACTTCACGGCCCCTTCAAAACGGGACCGG
TGACCCAACCACGC
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