prot_L-elsbetiae_contig11436.1253.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig11436.1253.1
Unique Nameprot_L-elsbetiae_contig11436.1253.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length144
Homology
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BLAST of mRNA_L-elsbetiae_contig11436.1253.1 vs. uniprot
Match: D7FUF2_ECTSI (PHD-type domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FUF2_ECTSI)

HSP 1 Score: 79.3 bits (194), Expect = 1.800e-14
Identity = 33/56 (58.93%), Postives = 38/56 (67.86%), Query Frame = 0 
Query:   72 CHAC-KVTISSQRPTFSCRTCRKVHHCECVGYTGKKRHFPPPDWICPRCPNGERGP 126
            C AC KV      P+F+CR CRK++H  CVGY  + R  PPPDWICP CP GERGP
Sbjct:  122 CEACGKVFTRDVHPSFACRACRKLYHRSCVGYANRARQSPPPDWICPHCPGGERGP 177
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11436.1253.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FUF2_ECTSI1.800e-1458.93PHD-type domain-containing protein n=1 Tax=Ectocar... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013083Zinc finger, RING/FYVE/PHD-typeGENE3D3.30.40.10coord: 33..125
e-value: 1.7E-7
score: 33.1
IPR019786Zinc finger, PHD-type, conserved sitePROSITEPS01359ZF_PHD_1coord: 72..119
IPR019787Zinc finger, PHD-fingerPROSITEPS50016ZF_PHD_2coord: 69..122
score: 8.796
IPR011011Zinc finger, FYVE/PHD-typeSUPERFAMILY57903FYVE/PHD zinc fingercoord: 69..120

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11436contigL-elsbetiae_contig11436:4357..4788 +
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11436.1253.1mRNA_L-elsbetiae_contig11436.1253.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig11436 4357..4788 +


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig11436.1253.1 ID=prot_L-elsbetiae_contig11436.1253.1|Name=mRNA_L-elsbetiae_contig11436.1253.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=144bp
MQRSRTEGEGISSPTLAHEATSSPGTPPSEGRGHQPPSPKPCGKRSEVAA
VEDEESEEGLSPLAKSLAKTRCHACKVTISSQRPTFSCRTCRKVHHCECV
GYTGKKRHFPPPDWICPRCPNGERGPDEDKLHGPFKTGPVTQPR
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR013083Znf_RING/FYVE/PHD
IPR019786Zinc_finger_PHD-type_CS
IPR019787Znf_PHD-finger
IPR011011Znf_FYVE_PHD