mRNA_L-elsbetiae_contig111.989.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig111.989.1
Unique NamemRNA_L-elsbetiae_contig111.989.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig111.989.1 vs. uniprot
Match: D7G587_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G587_ECTSI)

HSP 1 Score: 70.1 bits (170), Expect = 4.790e-13
Identity = 33/48 (68.75%), Postives = 44/48 (91.67%), Query Frame = 1 
Query:    1 WIGEQLGLLENVVREALTDVESRILESRLPVTVEVQEGGEEIAVPYQR 144
            W  +QL L+E++VR++LTD+ESRILESRLPVTVEV+E G+EIAVPY++
Sbjct:  235 WTNDQLLLVESMVRQSLTDIESRILESRLPVTVEVREDGDEIAVPYRK 282
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BLAST of mRNA_L-elsbetiae_contig111.989.1 vs. uniprot
Match: A0A6H5KUK4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUK4_9PHAE)

HSP 1 Score: 68.6 bits (166), Expect = 2.870e-12
Identity = 31/48 (64.58%), Postives = 44/48 (91.67%), Query Frame = 1 
Query:    1 WIGEQLGLLENVVREALTDVESRILESRLPVTVEVQEGGEEIAVPYQR 144
            W  +QL L+E+++R++LTD+ESRILESRLPVTVEV+E G+E+AVPY++
Sbjct:  342 WTNDQLLLVESMLRQSLTDIESRILESRLPVTVEVREDGDEVAVPYRK 389
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig111.989.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7G587_ECTSI4.790e-1368.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KUK4_9PHAE2.870e-1264.58Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig111contigL-elsbetiae_contig111:49467..49616 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size150
Cds size150
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815324.5380461-CDS-L-elsbetiae_contig111:49466..496161622815324.5380461-CDS-L-elsbetiae_contig111:49466..49616Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig111 49467..49616 +
1691682839.4363666-CDS-L-elsbetiae_contig111:49466..496161691682839.4363666-CDS-L-elsbetiae_contig111:49466..49616Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig111 49467..49616 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig111.989.1prot_L-elsbetiae_contig111.989.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig111 49467..49616 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig111.989.1

>prot_L-elsbetiae_contig111.989.1 ID=prot_L-elsbetiae_contig111.989.1|Name=mRNA_L-elsbetiae_contig111.989.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=50bp
WIGEQLGLLENVVREALTDVESRILESRLPVTVEVQEGGEEIAVPYQRA*
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mRNA from alignment at L-elsbetiae_contig111:49467..49616+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig111.989.1 ID=mRNA_L-elsbetiae_contig111.989.1|Name=mRNA_L-elsbetiae_contig111.989.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=150bp|location=Sequence derived from alignment at L-elsbetiae_contig111:49467..49616+ (Laminarionema elsbetiae ELsaHSoW15)
TGGATCGGCGAGCAGCTTGGGTTGCTGGAGAACGTGGTGCGAGAGGCTCT
AACCGACGTGGAAAGCCGTATCCTGGAGTCGAGACTGCCGGTCACCGTGG
AGGTGCAGGAGGGCGGGGAGGAGATTGCCGTGCCGTATCAGCGGGCTTAA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig111:49467..49616+

>mRNA_L-elsbetiae_contig111.989.1 ID=mRNA_L-elsbetiae_contig111.989.1|Name=mRNA_L-elsbetiae_contig111.989.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=300bp|location=Sequence derived from alignment at L-elsbetiae_contig111:49467..49616+ (Laminarionema elsbetiae ELsaHSoW15)
TGGATCGGCGAGCAGCTTGGGTTGCTGGAGAACGTGGTGCGAGAGGCTCT
AACCGACGTGGAAAGCCGTATCCTGGAGTCGAGACTGCCGGTCACCGTGG
AGGTGCAGGAGGGCGGGGAGGAGATTGCCGTGCCGTATCAGCGGGCTTAA
TGGATCGGCGAGCAGCTTGGGTTGCTGGAGAACGTGGTGCGAGAGGCTCT
AACCGACGTGGAAAGCCGTATCCTGGAGTCGAGACTGCCGGTCACCGTGG
AGGTGCAGGAGGGCGGGGAGGAGATTGCCGTGCCGTATCAGCGGGCTTAA
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