|
|
Homology
BLAST of mRNA_L-elsbetiae_contig11043.942.1 vs. uniprot
Match: D7G239_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G239_ECTSI) HSP 1 Score: 118 bits (295), Expect = 8.170e-28 Identity = 97/165 (58.79%), Postives = 111/165 (67.27%), Query Frame = 1
Query: 16 APTGSKGRRASSLERPTVSSSSQERPPSAVGATVRRG-RKRLSLEKDGTAATAKPRSSS---VGKRSSLSRRRG------GAEDDRGEEELREIIDLDAAAPSQDEIRLMIDRIRRESAGGPVVG--GDLVASSG-KFEHEAAPASGSSITSKLLRSARDVGRQQ 471
AP+ +G R ++RPT SSS QERP +VGA RR RKRLS+E++G KPRSSS VG+R+SL RR + LR I DLDA APSQ+EIR+MIDRIRRESA VVG G V S G +FEHEAAPASGSSITSKLLRSAR VGRQQ
Sbjct: 16 APSSGRGSRTGPVDRPTASSS-QERP--SVGAGTRRSARKRLSVERNGAV---KPRSSSIGSVGRRTSLGGRRAEXXXXXXXXXXXXXDALRGIGDLDAVAPSQEEIRVMIDRIRRESAMEEVVGAGGRAVNSKGQRFEHEAAPASGSSITSKLLRSARGVGRQQ 174
BLAST of mRNA_L-elsbetiae_contig11043.942.1 vs. uniprot
Match: A0A6H5JPN8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JPN8_9PHAE) HSP 1 Score: 77.8 bits (190), Expect = 7.480e-15 Identity = 74/141 (52.48%), Postives = 88/141 (62.41%), Query Frame = 1
Query: 16 APTGSKGRRASSLERPTVSSSSQERPPSAVGATVRRG-RKRLSLEKDGTAATAKPRSSSVGKRSSLSRRR--GGAEDDRGE-------EELREIIDLDAAAPSQDEIRLMIDRIRRESAGGPVVG--GDLVASSG-KFEHE 399
AP+ +G R ++RPT SSS QERP +VGA RR RKRLS+E++G A KPRSSS+G S+ RR GG + LR I DLDA APSQ+EIR+MIDRIRRESA VVG G V S G +FEHE
Sbjct: 16 APSSGRGSRTGPVDRPTASSS-QERP--SVGAGTRRSARKRLSVERNGAA---KPRSSSIG---SVGRRTILGGRXXXXXXXXXXXXXDALRGIGDLDAVAPSQEEIRVMIDRIRRESAVEEVVGAGGRTVNSKGQRFEHE 147
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Ec32 ortholog description | hypothetical protein |
| Ec32 ortholog | Ec-11_002240.1 |
| Exons | 2 |
| Model size | 558 |
| Cds size | 558 |
| Stop | 0 |
| Start | 0 |
Relationships
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815319.9927917-CDS-L-elsbetiae_contig11043:1330..1729 | 1622815319.9927917-CDS-L-elsbetiae_contig11043:1330..1729 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig11043 1331..1729 + |
| 1691682836.4715085-CDS-L-elsbetiae_contig11043:1330..1729 | 1691682836.4715085-CDS-L-elsbetiae_contig11043:1330..1729 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig11043 1331..1729 + |
| 1622815320.0042028-CDS-L-elsbetiae_contig11043:3715..3874 | 1622815320.0042028-CDS-L-elsbetiae_contig11043:3715..3874 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig11043 3716..3874 + |
| 1691682836.482853-CDS-L-elsbetiae_contig11043:3715..3874 | 1691682836.482853-CDS-L-elsbetiae_contig11043:3715..3874 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig11043 3716..3874 + |
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig11043.942.1 >prot_L-elsbetiae_contig11043.942.1 ID=prot_L-elsbetiae_contig11043.942.1|Name=mRNA_L-elsbetiae_contig11043.942.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=186bp
NKAAAAPTGSKGRRASSLERPTVSSSSQERPPSAVGATVRRGRKRLSLEK
DGTAATAKPRSSSVGKRSSLSRRRGGAEDDRGEEELREIIDLDAAAPSQD
EIRLMIDRIRRESAGGPVVGGDLVASSGKFEHEAAPASGSSITSKLLRSA
RDVGRQQASSSPPPPPLPPPMSTGSMATSSSAATEA back to topmRNA from alignment at L-elsbetiae_contig11043:1331..3874+ Legend: CDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig11043.942.1 ID=mRNA_L-elsbetiae_contig11043.942.1|Name=mRNA_L-elsbetiae_contig11043.942.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=2544bp|location=Sequence derived from alignment at L-elsbetiae_contig11043:1331..3874+ (Laminarionema elsbetiae ELsaHSoW15)
AACAAAGCCGCAGCGGCACCGACAGGCAGCAAGGGGAGGAGGGCGAGTTC
GCTGGAGCGCCCGACCGTGTCGTCTTCCTCCCAAGAGCGGCCGCCGTCGG
CCGTCGGCGCGACCGTCAGGCGCGGCAGGAAACGTCTCTCTCTCGAGAAG
GACGGCACTGCTGCCACCGCGAAGCCTCGCTCGAGCAGCGTCGGCAAGCG
CAGCAGCCTCAGCAGGAGGAGGGGGGGCGCGGAGGATGACCGCGGGGAGG
AGGAGCTGCGGGAGATCATCGACCTGGACGCCGCGGCCCCGAGCCAGGAC
GAAATCAGGCTCATGATCGACAGGATACGCCGGGAGTCGGCCGGGGGTCC
TGTCGTCGGCGGGGATCTGGTGGCGAGCAGCGGCAAGTTCGAACATGAGG
TATGCACTGCACTTACTTGCGCACGAGAGGGTACGCCTATACACCCTTAC
AGGTGTGATAGATGCGGCTGATGCGCATCGACGTGTCTTTTGTATTACCG
CTGCGAGTCTAAGAAGTCCGTGAGTAACAGCACTGGCTCGATTGTATGTA
CACAAACAACGGCCAACGGCCGAGCCCGGAAGGGGAGCACCGACAACGCA
TGTCGGCACATCGCCATAGACGCGGCGTTCCCCCTCCCCACACTTGATGG
CACACTGATCGCAGGAATCGCCGCCACGATCCCCCCTGAGATAATTTGTC
TCGTGGGTTTGAGTTGATCGAATGGAGATTTGCATTCGGACGGAGATAGA
TACCTACACTACATAAAGATACCCCGAGATTAAAAGTAACAATAAATCGA
ACAATTAACTGTCGGCCTGGGTGTCGGTGGGGGTGCGATGGTTCGACCGA
CCCTATCGATTGCCCGGTTCTTTCTCATTCAGATTTTTGGATTCAGACCT
TCATCGGTCTCCGACGGACATACTCTCCTCTTGGAAATGAGGGGCAATAG
GCGTGTGGTGGAGCATCGCATTGACGCACGCTATATATAGATATGTGTAC
AGCAGTAGTTGCACACGCACACGCACCAATGTATGTATATGAGTGATGTG
TGAAATCGTTTTCAAGGAGGCGCAGAAATTATCTATTTATTGATAAGTGC
TCGCCGCTGAGTCCAGATTTTGTAGTGAAGCAGGCTCAATCCTGTAGCTC
TGGTATGTCTCGAGGGCGTAGCACGAAGAACGAAGCGAATCGATGCTCTA
CTTAATCGCAGAGTACGAACAGTTTACGGGGAGGATTCAACCAAGAAAAG
GGCTACAACGAAGGAGGAGTAAAAGGGAAGAGTACGACGACGATGAGGGG
TGCAGTACAACAGGGTGACCCGAAACTACGCCGGTCTGGGCTTCGCAAAC
AGTACGCGCACACAAGACCCCCCCACACCACAGCTCCCGCCAAAACTACG
CCCTCTTGAGGCACGCTCACACGAGTGCGCCGGCCCTGGGAGCTCACATG
CGTCATCCCAGACGACACTACCCACAGGAGATGCGATCTACTGCTCATAG
CTAGCGTGCGTACGGGCGTTAGACCCTGAATCGCTCCGCGATCATCAAGT
CAGAGCTGCCGTCGAACACACTTTGAGGGGTTCGGCCAAACAAGCAGCAG
CTGTATTTAGGGCGCAACCAGTCAGCTACTGTCAGGGGGTGCTCTGCACA
CCTGAGACTCCCTTCTTGCCGATGTGCGCAGTCTCCTGGTGGATTGGTCA
CCTCTGTTTTGGGCCAAAATCGCACCAAAATGGTGCACGTTGTGTGTGCG
AACTGGCTCTCTCCTCTCTCTCTCTCTTCCATACAAAGCTCCCACAGCAC
ACTTGAGATGCCGAGAGTTAGTGCCCTGAAAATACGTCGCTTAAAAAATT
AATCTATATCTAATGATCCAAAGGATCTTATCTACGCATGCCCTCACTTT
CAGCCTGGATTAACTCCTCTTCGCCGAGCATTCAACATCTCCGTGTCTTA
CCAATACTGAGGCTCTGTGATCTGGCCGCACCAGAAATGTGCCTCCTTAA
AAATCACCGGCGCATGTGCCTCCTTATAAACGATTTCGCATATCACTGAT
ATAGATCGCACTTCGACGGTGTGCAGCCTGTTATTGTATAAACAAACATG
GAACCCCCGACTAGCCGGGCTACATAAGTCTTGCCTCTTATTTGGGTACA
GAGGGGGCCCAGGTGCTGCACCGGATGTTACGGCGGCAGAAGATAAGCAT
ACTCTAGCAAGATGCCCTCGTGCGTGGCAAGGAGCCCATCGAGCACTGGA
AATAAACGTGAAGAAGAAAAGGAAAACACACACACACACACACACACACA
CACACACACACACACACACGCGCGCGCGCGCGCTGCCCCCCCCCCGTTTC
AACGGCTGCTTAAAATCTGACCGCAACACCCCCAGGCGGCCCCGGCAAGC
GGCAGCAGCATCACCAGCAAGCTGCTGAGGTCCGCGCGCGATGTCGGGCG
GCAGCAAGCGTCATCGTCACCCCCCCCGCCCCCCCTCCCTCCGCCCATGA
GCACGGGGTCCATGGCGACTTCGTCGTCGGCCGCAACGGAGGCC back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig11043:1331..3874+ >mRNA_L-elsbetiae_contig11043.942.1 ID=mRNA_L-elsbetiae_contig11043.942.1|Name=mRNA_L-elsbetiae_contig11043.942.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1116bp|location=Sequence derived from alignment at L-elsbetiae_contig11043:1331..3874+ (Laminarionema elsbetiae ELsaHSoW15)
AACAAAGCCGCAGCGGCACCGACAGGCAGCAAGGGGAGGAGGGCGAGTTC
GCTGGAGCGCCCGACCGTGTCGTCTTCCTCCCAAGAGCGGCCGCCGTCGG
CCGTCGGCGCGACCGTCAGGCGCGGCAGGAAACGTCTCTCTCTCGAGAAG
GACGGCACTGCTGCCACCGCGAAGCCTCGCTCGAGCAGCGTCGGCAAGCG
CAGCAGCCTCAGCAGGAGGAGGGGGGGCGCGGAGGATGACCGCGGGGAGG
AGGAGCTGCGGGAGATCATCGACCTGGACGCCGCGGCCCCGAGCCAGGAC
GAAATCAGGCTCATGATCGACAGGATACGCCGGGAGTCGGCCGGGGGTCC
TGTCGTCGGCGGGGATCTGGTGGCGAGCAGCGGCAAGTTCGAACATGAGA
ACAAAGCCGCAGCGGCACCGACAGGCAGCAAGGGGAGGAGGGCGAGTTCG
CTGGAGCGCCCGACCGTGTCGTCTTCCTCCCAAGAGCGGCCGCCGTCGGC
CGTCGGCGCGACCGTCAGGCGCGGCAGGAAACGTCTCTCTCTCGAGAAGG
ACGGCACTGCTGCCACCGCGAAGCCTCGCTCGAGCAGCGTCGGCAAGCGC
AGCAGCCTCAGCAGGAGGAGGGGGGGCGCGGAGGATGACCGCGGGGAGGA
GGAGCTGCGGGAGATCATCGACCTGGACGCCGCGGCCCCGAGCCAGGACG
AAATCAGGCTCATGATCGACAGGATACGCCGGGAGTCGGCCGGGGGTCCT
GTCGTCGGCGGGGATCTGGTGGCGAGCAGCGGCAAGTTCGAACATGAGGC
GGCCCCGGCAAGCGGCAGCAGCATCACCAGCAAGCTGCTGAGGTCCGCGC
GCGATGTCGGGCGGCAGCAAGCGTCATCGTCACCCCCCCCGCCCCCCCTC
CCTCCGCCCATGAGCACGGGGTCCATGGCGACTTCGTCGTCGGCCGCAAC
GGAGGCCGCGGCCCCGGCAAGCGGCAGCAGCATCACCAGCAAGCTGCTGA
GGTCCGCGCGCGATGTCGGGCGGCAGCAAGCGTCATCGTCACCCCCCCCG
CCCCCCCTCCCTCCGCCCATGAGCACGGGGTCCATGGCGACTTCGTCGTC
GGCCGCAACGGAGGCC back to top
|