mRNA_L-elsbetiae_contig1103.933.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig1103.933.1
Unique NamemRNA_L-elsbetiae_contig1103.933.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
BLAST of mRNA_L-elsbetiae_contig1103.933.1 vs. uniprot
Match: D7FWF5_ECTSI (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWF5_ECTSI)

HSP 1 Score: 459 bits (1180), Expect = 9.400e-156
Identity = 212/220 (96.36%), Postives = 217/220 (98.64%), Query Frame = 2
Query:   17 QDQKPYMKTYPVDMDDCGPMVLDALIKIKNEQDPTLTFRRSCREGICGSCAMNINGKNTLACLCAIEEDSAPMKVYPLPHMFVQKDLVPDMANFYEQYKSIEPWLKTKTEKDPDVEHLQSIQDRKKLDGMYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWIDDSRDDYTKERLEALDDAFKLFRCHTIMNCTKTCPKHLNPGKAIANIKKRVHAL 676
            +DQKPYMKTYP+D DDCGPMVLDALIKIKNEQDPTLTFRRSCREGICGSCAMNINGKNTLACLCAIEEDSAPMK+YPLPHMFVQKDLVPDM NFYEQYKSIEPWLKTK +KDPDVEHLQSIQDRKKLDGMYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWIDDSRDDYTKERLE+LDDAFKLFRCHTIMNCTKTCPKHLNPGKAIANIKKRVHAL
Sbjct:   61 KDQKPYMKTYPIDRDDCGPMVLDALIKIKNEQDPTLTFRRSCREGICGSCAMNINGKNTLACLCAIEEDSAPMKIYPLPHMFVQKDLVPDMTNFYEQYKSIEPWLKTKKDKDPDVEHLQSIQDRKKLDGMYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWIDDSRDDYTKERLESLDDAFKLFRCHTIMNCTKTCPKHLNPGKAIANIKKRVHAL 280          
BLAST of mRNA_L-elsbetiae_contig1103.933.1 vs. uniprot
Match: A0A6H5JQA7_9PHAE (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQA7_9PHAE)

HSP 1 Score: 452 bits (1162), Expect = 1.340e-153
Identity = 213/229 (93.01%), Postives = 216/229 (94.32%), Query Frame = 2
Query:   17 QDQKPYMKTYPVDMDDCGPMVLDALIKIKNEQDPTLTFRRSCREGICGSCAMNINGKNTLACLCAIEEDSAPMKVYPLPHMFVQKDLVPDMANFYEQYKSIEPWLKTKTEKDPDVEHLQSIQDRKKLDGMYECILCACCSTSCPSYWWNADKYLGPAVLMQ---------AYRWIDDSRDDYTKERLEALDDAFKLFRCHTIMNCTKTCPKHLNPGKAIANIKKRVHAL 676
            QDQKPYMKTYP+D DDCGPMVLDALIKIKNEQDPTLTFRRSCREGICGSCAMNINGKNTLACLCAIEEDSAPMK+YPLPHMFVQKDLVPDM NFYEQYKSIEPWLKTK +KDPDVEHLQSIQDRKKLDGMYECILCACCSTSCPSYWWNADKYLGPAVLMQ         AYRWIDDSRDDYTKERLE LDDAFKLFRCHTIMNCTKTCPKHLNPGKAIANIKKRVHAL
Sbjct:   16 QDQKPYMKTYPIDRDDCGPMVLDALIKIKNEQDPTLTFRRSCREGICGSCAMNINGKNTLACLCAIEEDSAPMKIYPLPHMFVQKDLVPDMTNFYEQYKSIEPWLKTKKDKDPDVEHLQSIQDRKKLDGMYECILCACCSTSCPSYWWNADKYLGPAVLMQGGVEVGAVEAYRWIDDSRDDYTKERLELLDDAFKLFRCHTIMNCTKTCPKHLNPGKAIANIKKRVHAL 244          
BLAST of mRNA_L-elsbetiae_contig1103.933.1 vs. uniprot
Match: A0A836C854_9STRA (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C854_9STRA)

HSP 1 Score: 399 bits (1025), Expect = 1.290e-132
Identity = 183/226 (80.97%), Postives = 207/226 (91.59%), Query Frame = 2
Query:    2 YRSDT-QDQKPYMKTYPVDMDDCGPMVLDALIKIKNEQDPTLTFRRSCREGICGSCAMNINGKNTLACLCAIEEDSAPMKVYPLPHMFVQKDLVPDMANFYEQYKSIEPWLKTKTEKDPDVEHLQSIQDRKKLDGMYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWIDDSRDDYTKERLEALDDAFKLFRCHTIMNCTKTCPKHLNPGKAIANIKKRVHAL 676
            YR D  Q QKPY+ TYPVD+ +CGPMVLDAL+KIKNEQDPTLTFRRSCREGICGSCAMNI+G+NTLACLC I+ +S+ +KV PLPHM+V KDLVPDM NFY+QYKSIEPWLKTKT K  D EHLQS++DRKKLDGMYECI+CACCST+CPSYWWN DKYLGPAVLMQAYRWI+DSRD+YT+ERLE LDDAFKL+RCHTIMNC++TCPKHLNPGKAIA+IKKR+ AL
Sbjct:   38 YRWDPEQKQKPYVSTYPVDLSECGPMVLDALLKIKNEQDPTLTFRRSCREGICGSCAMNIDGRNTLACLCYIDRNSSSIKVNPLPHMYVVKDLVPDMTNFYDQYKSIEPWLKTKTPKKDDKEHLQSVEDRKKLDGMYECIMCACCSTACPSYWWNGDKYLGPAVLMQAYRWIEDSRDEYTRERLEQLDDAFKLYRCHTIMNCSQTCPKHLNPGKAIAHIKKRMMAL 263          
BLAST of mRNA_L-elsbetiae_contig1103.933.1 vs. uniprot
Match: A0A835Z536_9STRA (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z536_9STRA)

HSP 1 Score: 397 bits (1021), Expect = 5.560e-132
Identity = 185/226 (81.86%), Postives = 205/226 (90.71%), Query Frame = 2
Query:    2 YRSDT-QDQKPYMKTYPVDMDDCGPMVLDALIKIKNEQDPTLTFRRSCREGICGSCAMNINGKNTLACLCAIEEDSAPMKVYPLPHMFVQKDLVPDMANFYEQYKSIEPWLKTKTEKDPDVEHLQSIQDRKKLDGMYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWIDDSRDDYTKERLEALDDAFKLFRCHTIMNCTKTCPKHLNPGKAIANIKKRVHAL 676
            YR D  Q QKPY+ TYPVD+D+CGPMVLDAL+KIKNEQDPTLTFRRSCREGICGSCAMNING+NTLACL  I++ S+  KV PLPHM+V KDLVPDM NFY+QYKSIEPWLKTKT K  D EHLQSI DRKKLDGMYECILCACCSTSCPSYWWN DKYLGPAVLMQAYRWI+DSRD++T+ERLE LDDAFKL+RCHTIMNC++TCPKHLNPGKAIA+IKKR+ A+
Sbjct:   40 YRWDPEQRQKPYVSTYPVDLDECGPMVLDALLKIKNEQDPTLTFRRSCREGICGSCAMNINGRNTLACLAYIDKSSSSTKVNPLPHMYVVKDLVPDMTNFYDQYKSIEPWLKTKTPKKDDKEHLQSIADRKKLDGMYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWIEDSRDEFTRERLEQLDDAFKLYRCHTIMNCSQTCPKHLNPGKAIAHIKKRMMAI 265          
BLAST of mRNA_L-elsbetiae_contig1103.933.1 vs. uniprot
Match: W7U0Z2_9STRA (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U0Z2_9STRA)

HSP 1 Score: 392 bits (1008), Expect = 8.880e-130
Identity = 184/227 (81.06%), Postives = 203/227 (89.43%), Query Frame = 2
Query:    2 YRSDT-QDQKPYMKTYPVDMDDCGPMVLDALIKIKNEQDPTLTFRRSCREGICGSCAMNINGKNTLACLCAIEEDSAPMKVYPLPHMFVQKDLVPDMANFYEQYKSIEPWLKTKT--EKDPDVEHLQSIQDRKKLDGMYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWIDDSRDDYTKERLEALDDAFKLFRCHTIMNCTKTCPKHLNPGKAIANIKKRVHA 673
            YR D  Q+QKPY+ TYPVD+DDCGPMVLDAL KIKNEQDPTLTFRRSCREGICGSCAMNI+G NTLACL  I +   P K+YPLPHM+V KDLVPDM NFY+QYKSIEPWL+TK    KDP+ EHLQS +DRKKLDGMYECILCACCST+CPSYWW ADKYLGPAVLMQAYRWI+DSRD+YTKERLEALDD+FKL+RCHTIMNCTK CPKHLNPG+AIA+IKKR+ A
Sbjct:   54 YRWDPEQNQKPYLSTYPVDLDDCGPMVLDALFKIKNEQDPTLTFRRSCREGICGSCAMNIDGTNTLACLSYINKGPEPTKIYPLPHMYVLKDLVPDMTNFYDQYKSIEPWLQTKAVEAKDPNKEHLQSKEDRKKLDGMYECILCACCSTACPSYWWAADKYLGPAVLMQAYRWIEDSRDEYTKERLEALDDSFKLYRCHTIMNCTKVCPKHLNPGRAIAHIKKRLAA 280          
BLAST of mRNA_L-elsbetiae_contig1103.933.1 vs. uniprot
Match: A0A7R9W5S4_9STRA (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W5S4_9STRA)

HSP 1 Score: 383 bits (984), Expect = 1.500e-126
Identity = 183/230 (79.57%), Postives = 199/230 (86.52%), Query Frame = 2
Query:    2 YRSDT-QDQKPYMKTYPVDMDDCGPMVLDALIKIKNEQDPTLTFRRSCREGICGSCAMNINGKNTLACLCAIEEDSA------PMKVYPLPHMFVQKDLVPDMANFYEQYKSIEPWLKTKTEKDP-DVEHLQSIQDRKKLDGMYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWIDDSRDDYTKERLEALDDAFKLFRCHTIMNCTKTCPKHLNPGKAIANIKKRV 667
            YR D  Q QKPY+ TYPVD++DCGPMVLDALIKIKNEQDPTLTFRRSCREGICGSCAMNI+G NTLACLC IE   +        K+YPLPHM+V KDLVPDM NFYEQY+SIEPWLK K  K+P   E+LQS +DR KLDGMYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWI+DSRDD+TKERLE LDDAFKL+RCHTIMNCTK CPKHLNPGKAI NIKK++
Sbjct:   27 YRWDPDQRQKPYLSTYPVDLNDCGPMVLDALIKIKNEQDPTLTFRRSCREGICGSCAMNIDGTNTLACLCYIEPKGSGDTSGKATKIYPLPHMYVVKDLVPDMGNFYEQYRSIEPWLKKKKGKEPGQAEYLQSREDRAKLDGMYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWIEDSRDDFTKERLEDLDDAFKLYRCHTIMNCTKVCPKHLNPGKAIGNIKKKL 256          
BLAST of mRNA_L-elsbetiae_contig1103.933.1 vs. uniprot
Match: A0A7S0PK69_9STRA (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial n=2 Tax=Leptocylindrus aporus TaxID=1398097 RepID=A0A7S0PK69_9STRA)

HSP 1 Score: 379 bits (974), Expect = 7.860e-125
Identity = 180/225 (80.00%), Postives = 202/225 (89.78%), Query Frame = 2
Query:    2 YRSDT-QDQKPYMKTYPVDMDDCGPMVLDALIKIKNEQDPTLTFRRSCREGICGSCAMNINGKNTLACLCAIEEDSAPM-KVYPLPHMFVQKDLVPDMANFYEQYKSIEPWLKTKTEKDP-DVEHLQSIQDRKKLDGMYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWIDDSRDDYTKERLEALDDAFKLFRCHTIMNCTKTCPKHLNPGKAIANIKKRV 667
            YR D  Q QKPY+ TYPVD+++CGPMVLDALIKIKNEQDPTLTFRRSCREGICGSCAMNI+G NTLACLC I++ SA   K+YPLPHM+V KDLVPDM+NFYEQY+SIEPWL+T  EK+    E LQ+ ++R KLDGMYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWI+DSRD++TKERLE LDDAFKL+RCHTIMNCTK CPKHLNPGKAIANIKK++
Sbjct:   42 YRWDPEQKQKPYISTYPVDLNNCGPMVLDALIKIKNEQDPTLTFRRSCREGICGSCAMNIDGTNTLACLCYIDDKSAAATKIYPLPHMYVVKDLVPDMSNFYEQYRSIEPWLQTTKEKEEGQKEWLQTRENRAKLDGMYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWIEDSRDEFTKERLEELDDAFKLYRCHTIMNCTKVCPKHLNPGKAIANIKKKL 266          
BLAST of mRNA_L-elsbetiae_contig1103.933.1 vs. uniprot
Match: A0A7S0LTD8_9EUKA (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LTD8_9EUKA)

HSP 1 Score: 380 bits (975), Expect = 3.660e-124
Identity = 175/221 (79.19%), Postives = 194/221 (87.78%), Query Frame = 2
Query:    2 YRSDTQDQK-PYMKTYPVDMDDCGPMVLDALIKIKNEQDPTLTFRRSCREGICGSCAMNINGKNTLACLCAIEEDSAPMKVYPLPHMFVQKDLVPDMANFYEQYKSIEPWLKTKTEKDPDVEHLQSIQDRKKLDGMYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWIDDSRDDYTKERLEALDDAFKLFRCHTIMNCTKTCPKHLNPGKAIANIKK 661
            YR D    K PY++ Y VD+D+CGPMVLDALIKIKNEQD TLTFRRSCREGICGSCAMNING NTLACLC I +DS PM +YPLPHM + KDLVPD++NFYEQYKSI+PWL+T  EKDP+ EHLQS++DRKKLDGMYECILCACCSTSCPSYWWN DKYLGPAVLMQAYRWI DSRD  T+ERL ALDD +KL+RCHTIMNCTK CPKHLNPG+AIA +KK
Sbjct:   96 YRWDPDSSKDPYVQNYSVDLDECGPMVLDALIKIKNEQDQTLTFRRSCREGICGSCAMNINGGNTLACLCNITDDSEPMTIYPLPHMEIVKDLVPDLSNFYEQYKSIQPWLQTDVEKDPNQEHLQSVEDRKKLDGMYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWIADSRDTKTEERLAALDDQWKLYRCHTIMNCTKACPKHLNPGQAIARVKK 316          
BLAST of mRNA_L-elsbetiae_contig1103.933.1 vs. uniprot
Match: A0A7S2LAL1_9STRA (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LAL1_9STRA)

HSP 1 Score: 376 bits (965), Expect = 2.430e-123
Identity = 179/225 (79.56%), Postives = 199/225 (88.44%), Query Frame = 2
Query:    2 YRSDT-QDQKPYMKTYPVDMDDCGPMVLDALIKIKNEQDPTLTFRRSCREGICGSCAMNINGKNTLACLCAIE-EDSAPMKVYPLPHMFVQKDLVPDMANFYEQYKSIEPWLKTKTEKDP-DVEHLQSIQDRKKLDGMYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWIDDSRDDYTKERLEALDDAFKLFRCHTIMNCTKTCPKHLNPGKAIANIKKRV 667
            YR D  Q QKPY+ T+PVD++DCGPMVLDALIKIKNEQDPTLTFRRSCREGICGSCAMNI+G NTLACLC I  E S+  K+YPLPHM+V KDLVPDM+NFYEQY+SIEPWL+T   K+P   E LQ+ +DR KLDGMYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWI+DSRDDY K+RL  LDDAFKL+RCHTIMNCTK CPK+LNPGKAIANIKK++
Sbjct:   49 YRWDPEQKQKPYISTFPVDLNDCGPMVLDALIKIKNEQDPTLTFRRSCREGICGSCAMNIDGSNTLACLCYINNESSSATKIYPLPHMYVIKDLVPDMSNFYEQYRSIEPWLQTVQSKEPGQKEWLQTKEDRAKLDGMYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWIEDSRDDYGKKRLAELDDAFKLYRCHTIMNCTKVCPKNLNPGKAIANIKKKL 273          
BLAST of mRNA_L-elsbetiae_contig1103.933.1 vs. uniprot
Match: B8BYI4_THAPS (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BYI4_THAPS)

HSP 1 Score: 373 bits (957), Expect = 9.480e-123
Identity = 173/223 (77.58%), Postives = 196/223 (87.89%), Query Frame = 2
Query:   23 QKPYMKTYPVDMDDCGPMVLDALIKIKNEQDPTLTFRRSCREGICGSCAMNINGKNTLACLCAIEEDSAP-------MKVYPLPHMFVQKDLVPDMANFYEQYKSIEPWLKTKTEK-DPDVEHLQSIQDRKKLDGMYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWIDDSRDDYTKERLEALDDAFKLFRCHTIMNCTKTCPKHLNPGKAIANIKKRV 667
            QKPY+ TYPVD++DCGPMVLDALIKIK+EQDPTLTFRRSCREGICGSCAMNING+NTLACLC IE+           MK+YPLPHM+V KDLVPDM NFYEQY+SIEPWL+TK  K +   E+LQ+ +DR KLDGMYECILCACCST+CPSYWWNADKYLGPAVLMQAYRWI+DSRDD+T +RL  LDDAFKL+RCHTIMNC+K CPKHLNPGKAIA+IKK++
Sbjct:   15 QKPYLSTYPVDLNDCGPMVLDALIKIKSEQDPTLTFRRSCREGICGSCAMNINGRNTLACLCYIEDKEKKGSSGGDVMKIYPLPHMYVLKDLVPDMGNFYEQYRSIEPWLQTKDGKAEGQAEYLQTREDRAKLDGMYECILCACCSTACPSYWWNADKYLGPAVLMQAYRWIEDSRDDFTDKRLAELDDAFKLYRCHTIMNCSKVCPKHLNPGKAIAHIKKKL 237          
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1103.933.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D7FWF5_ECTSI9.400e-15696.36Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]
A0A6H5JQA7_9PHAE1.340e-15393.01Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]
A0A836C854_9STRA1.290e-13280.97Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]
A0A835Z536_9STRA5.560e-13281.86Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]
W7U0Z2_9STRA8.880e-13081.06Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]
A0A7R9W5S4_9STRA1.500e-12679.57Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]
A0A7S0PK69_9STRA7.860e-12580.00Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]
A0A7S0LTD8_9EUKA3.660e-12479.19Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]
A0A7S2LAL1_9STRA2.430e-12379.56Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]
B8BYI4_THAPS9.480e-12377.58Succinate dehydrogenase [ubiquinone] iron-sulfur s... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig1103contigL-elsbetiae_contig1103:20439..27826 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons6
Model size1968
Cds size828
Stop1
Start0
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815318.955709-UTR-L-elsbetiae_contig1103:20438..215761622815318.955709-UTR-L-elsbetiae_contig1103:20438..21576Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1103 20439..21576 -
1691682835.8078132-UTR-L-elsbetiae_contig1103:20438..215761691682835.8078132-UTR-L-elsbetiae_contig1103:20438..21576Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig1103 20439..21576 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815318.9676247-CDS-L-elsbetiae_contig1103:21576..218221622815318.9676247-CDS-L-elsbetiae_contig1103:21576..21822Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1103 21577..21822 -
1691682835.816309-CDS-L-elsbetiae_contig1103:21576..218221691682835.816309-CDS-L-elsbetiae_contig1103:21576..21822Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1103 21577..21822 -
1622815319.0330346-CDS-L-elsbetiae_contig1103:22972..230551622815319.0330346-CDS-L-elsbetiae_contig1103:22972..23055Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1103 22973..23055 -
1691682835.8264418-CDS-L-elsbetiae_contig1103:22972..230551691682835.8264418-CDS-L-elsbetiae_contig1103:22972..23055Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1103 22973..23055 -
1622815319.0471046-CDS-L-elsbetiae_contig1103:23838..239641622815319.0471046-CDS-L-elsbetiae_contig1103:23838..23964Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1103 23839..23964 -
1691682835.8390372-CDS-L-elsbetiae_contig1103:23838..239641691682835.8390372-CDS-L-elsbetiae_contig1103:23838..23964Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1103 23839..23964 -
1622815319.063875-CDS-L-elsbetiae_contig1103:24747..249001622815319.063875-CDS-L-elsbetiae_contig1103:24747..24900Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1103 24748..24900 -
1691682835.848279-CDS-L-elsbetiae_contig1103:24747..249001691682835.848279-CDS-L-elsbetiae_contig1103:24747..24900Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1103 24748..24900 -
1622815319.0795734-CDS-L-elsbetiae_contig1103:26031..261391622815319.0795734-CDS-L-elsbetiae_contig1103:26031..26139Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1103 26032..26139 -
1691682835.8571558-CDS-L-elsbetiae_contig1103:26031..261391691682835.8571558-CDS-L-elsbetiae_contig1103:26031..26139Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1103 26032..26139 -
1622815319.0918448-CDS-L-elsbetiae_contig1103:27714..278261622815319.0918448-CDS-L-elsbetiae_contig1103:27714..27826Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1103 27715..27826 -
1691682835.8666635-CDS-L-elsbetiae_contig1103:27714..278261691682835.8666635-CDS-L-elsbetiae_contig1103:27714..27826Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig1103 27715..27826 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig1103.933.1prot_L-elsbetiae_contig1103.933.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig1103 21577..27826 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig1103.933.1

>prot_L-elsbetiae_contig1103.933.1 ID=prot_L-elsbetiae_contig1103.933.1|Name=mRNA_L-elsbetiae_contig1103.933.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=276bp
LSLRHAGPKAVHEDLPGGHGRLRAHGAGRAHQDQERTGPHVDVPAVLPRG
HLRVVRDEHQREEHAGVPLRHRRGLRPHEGVPPAAHVRPEGPRAGHGQLL
RAVQEHRAVAEDEDRERPGRRAPAVHPGPQETRRYVRVHSVRLLQHVVPV
VLVERRQVPRPRGPHAGLPLDRRLARRLHQGASGGPRRCLQAIPVSHDHE
LHQDVPEAPQPRQGDRQHQEEGARALGLAMHHKQRVTYTYWPRYEWGPFF
WSACASPVEGRAGGSGSGGCRSVRP*
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mRNA from alignment at L-elsbetiae_contig1103:20439..27826-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig1103.933.1 ID=mRNA_L-elsbetiae_contig1103.933.1|Name=mRNA_L-elsbetiae_contig1103.933.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=7388bp|location=Sequence derived from alignment at L-elsbetiae_contig1103:20439..27826- (Laminarionema elsbetiae ELsaHSoW15)
CTATCGCTCCGACACGCAGGACCAAAAGCCGTACATGAAGACTTACCCGG TGGACATGGACGACTGCGGGCCCATGGTGCTGGACGCGCTCATCAAGATC AAGAACGAACAGGTGAGACAGGGGGGAGCCTCCGTGCGGGGAGAGGGGGG GTCCCGCGTGGGTGTCCCGTTTGTGTAGGGGGGGGGTGCTTCTCTCGGTT CTTGCTGACCGCCGGGCCACGCCCCCACCAATATCGAGAGATTGAGATGC GAAGGGCGTGGGAGTGTTTGTCTCACCTCTCTTGTTCTCCCCTGCGCGGC CACTCGCCTCTCGTGTCCCGCCTACTGGATTTGTGTTTCTCTCTCCCCGT GTTTGCTTTGCGTATTGTATGTACGTATCATACATACACATCGCACTGCC TGCAGTCTCCCGTAAACCATTCGACCAGCGGAGAGACCCCCGCCGCCCTC TTTTTTAAAAATAAACAATGAATCAAAGATGGAACCTACCCCACACTAGA GCAAGGACTCGATATGGGGTTCAAACGGTATTACATACAGAGACGTAATA TTTGGCGAAGCGAGCAGAAAAACAACCTAAAATATCAGAAGAGTTCAACA TCTCCCCTGCAAAGATTTAAGATTTCCCCGCCCGCCCTACATTTATTCCT TTTGACCCCACAAAACCCCTGTTTTTTTTTTTTTTTTTGTCTCTAACTCC AGTCGTATACCTTTTGTGAGGGTACACACAGTGGCGTTGTAATTTTTTGT TTTTATCGGACATACGTACATAGCACACGCTTTTTTGCTCTGCGCATCGA AATACACGCGCACCGTACATAGTACATATATCTATTTGTATACCTCCTTG AACAACGCGGGTGGTTTTTCCCGGCGATTTTCTTGCTGCTGCCCGTCTCG GCGCGTCACGGCCATCATCGTCTTGCCAGGCGCAGAAAACTCTGGGCGTC CAGTCTGCGAATAAGTCGTTCCAGAGGGACTGCTGTTGTAGGCGTACTAA CCCCCTGTTTCCCCATCCAAGATGTACTCCCACAAATTCCGTAGTTCAAT TAAAAACCGGTATCTATACGATATATATCTAGATTAAGTGTAAGTATATA TTTCAAACCGGTAATCTATGTGCCGCAGTCTCGTGTGCGGCGGCCCGGCG AGAGCGTAAATAGATAGACGCCGAGCATCATCTTGTTGTCGCTGTGCCCC CTACGTGGTTACTACTGTGTGTAGCATCAGCATTTCCCGCGAGCGTACGT ACGTGCCCCGGCGGTCGGCCTCCGCCCACCCACCCCCACTCAGCAAAATT CTGCGATGAACGTAAAATTTTGTACATCCATATGTACCTATTGCGGACGC GATTTTTGGCTGTGGGTAAAAATAAAGAAGCGAGCAGCCTTGCAATTGTT TTTGCTGTACAACAGACGAAAACGAGCAGGCGAGTGAGTGAGAGGTCGTT TCGTGTGCCGTTTCGTGTGCCGTTTCGTGTGCCGTTTCGTGTGCCGTTTC GTGTGTCGTTTCGTGTGTCGTTTCGTGTGGGCGGTGTCTTGCCAGAACGC CCGGTACGTTTTTTCGTCTCTGACAGCAATACTTCACTGCTGTTGTCCTT CCGCCCGCCGTGTCTGCATAAATATGTGCTTTCGCCCCCCCCCCCGCCAC ACGCATGCACACTTCCGTGCGGCGCCCCCGCGCTCAGGACCCCACGTTGA CGTTCCGGCGGTCTTGCCGCGAGGGCATCTGCGGGTCGTGCGCGATGAAC ATCAACGGGAAGAACACGCTGGCGTGCCTCTGCGCCATCGAAGAGGTGCG TTATCGACAGAGATTGTTGTTGTGTGGTGGTGGTGGTGGTGGTGGTGTGG TGGCGGTTGTTGGTGTTGATGTTGTTGACGATGCTGTTGATGTTGCTGTT GCTGTCGTTGTTGCGGTTGTTGTTGCTGTTGATGTTCTTGATTTTGATGT CGAAGAGTTGTCTTACTTCGAACGACTACCGTTTCAAAGACGTTCCGACC TAGCTCTGTACCCTCTCTGGCCCATGCTCGTCCGACTGAAGGTGGACGCC AGGATCGATCGTAGAGGGCGGTGTTTCGTCGATGCTTCGCTTTTTGTACC TATATTTTAGATGTGGTCTTGTGGTGTGTTTTTTCTCTGGGCGCTCGAGA GACAATTCGGCGGCGTCCATTAAAAGGTGGAAAACAATTCCCCACCTTTT TTTGTTCCTACTTTCCCACCTTTTCTTGTCCCAACTTTCCCATTGCATAC TAGGTATTGTAGTACATACATATATACCTCTGGCCAGTCTTCACTCTTGC GCACCCAGTCTCATATTTCTCGTTTCATGTGTCTTGCCTTGGCTCTTCGG AGGGGAAGGGCGTGGGAGCTATTCTTGTAAATACATAAAAACATACTACT GTGTACCCTGGTACGCAATAACGTTTTCGCCCATACTGTACTCCTAAACT ATACTTAGTATCCTTTCCCCCTTTCAGCAGTACTCTGGCAAGATGTCCTC GTGACAAGGAGTCCATCGAGCGCTGGAAATAAATGTGAAGAAGGAAAAAA AAATATCCTTTCCCCTACACCCAAAAAGAGTATACACCTAAATAGATATT TAGCGACCCATTTCCGTCTCAATGCTGTAGATATATCTGATAAATCTGGG ATGGGGAAACAGGGGGTTAGTACATACGCCTATAACAGCATTCCCTCTGG AACGACTTCTTCACAGACTGGGCGTAGACTGCTGACATTTGTATTCATTA ATTAAACAGAGGACTGCGACCAGCAGCATCCGCCGTGTTGACCCCCGTAT TCTGTTTTCGTTTTTTCGTTACTCTTCTTTCCCCGTCCCCCTCTCTCTCT CTCCCTACGCCCCTCCCTGATCACCGGGGTCGTTTTGTTTTCGACGGTCG GGGGCCCCGCGGCGCACGAGCAACAGGACTCCGCCCCCATGAAGGTGTAC CCCCTGCCGCACATGTTCGTCCAGAAGGACCTCGTGCCGGACATGGCCAA CTTCTACGAGCAGTACAAGAGCATCGAGCCGTGGCTGAAGACGAAGACCG AGAAAGACCCGGACGTCGAGCACCTGCAGGTGTGTGCGTGCGGGAAAAGC GTGTACTCAGCCTTCGCAGATTTTATTTTACTGGAAGAAATCATATTGAA ATGTTTAAGTATGGAAATGGCTAATGGGGGGTCGGTTTGGGGGTTAGGGT TAGGGTTAGGGAACCCCTGTTTATGATTTCTTATGTACGTAGTCAGGAAT TACAGGAATTCTTCTCGAAGGTGGTCCTGCGTGGTATGTCTGTCTGTTGT GTAGATGTGTTTGGCCGCGCGCACGCGCGTGCGAGGCGTGTGCGTTGCTT GTTTCACAATGACACCAGCCACAACAGAGGGTGGATATAAATATACCTCC CCTCGCATAACCGGTTGACCATTTAACTACATAGAATCCAGTCTCAACAC GCGCCTGTGCGTGCCTATTGTTCAGTACCAAAGACTCCGCGCGCCACCGA GCCTGCGCGTTTCTGTGCGAGCCTATGGTAGCCTCTTTTTATTGCACATG GTAGCTACATAGTCCAGTCGCCTCGCTTGCGAAAATTACAATTCACGCGA GGCCTTCCTCTTTTTTTCTCCAGTCGTGTTTTTATTTTTATTTTTGTTGT GTTATATTGTATTGTGTTTTAAATAATTAATGTATACATGTCAGCAGTCT ACGCCCAGCCTGTGAAAAAAGCCGTTTCAGAGGGGATCTGTTGTAGGCAT ATATGTGTACGTACATGTTAACCCCCCTTTTTTGTGTGTTTGTGTGTTTT TTGTTATTGTTTTTTTGTCTCCTGCTTTTTTTGTTTTCTCTTTTTTTTGT CCCCGAGCGCAGTCCATCCAGGACCGCAAGAAACTAGACGGTATGTACGA GTGCATTCTGTGCGCCTGCTGCAGCACGTCGTGCCCGTCGTACTGGTGGA ACGCCGACAAGTACCTCGGCCCCGCGGTCCTCATGCAGGTGAGGGAAGAG GGGCTCGACCAAAAATCGGATCAAGCGACATTAAATAGGCAAGCACCGCA GAAGGGGGTAGTGGGGGCCCTGGGAAAAGGAACCCTTCTGTGTGACCACG GTTCAGTATTGTACTCTGGCAAGATGTCCTCGTGACAAGAACCCCATCCA GCACTGGAAATAAATGTGAAGAATAGACTATATACAAATATGAAAATCGG ATCGTGGATTTTTGTGTTATTTTACCACTACTTGTAGTACCAGTATGTGC TAGCCTGTAGTCTGGGGCGGGGCGAGGGATGGTTACTTGTACTGCTGTGT CCGCAGCAGTCCCTTCGTGGAACGATCTATTTCGCAGGTCGTCAGGCGTA CGTATATATATGTATGTGGATCGCTGACGCCTTCGCAGAAAAAGTGTTTC ACAGACTGGACGTAGGACTGCTGACATTTGTATACATTACAATTAAAAAA TCGGATGCAATGGTGGGATTTTTGTGCGCGGCGATGACGCATCATCCAAT GGTGTTTTTGTGTTGTTGTCGTCGTGTGGCAATGACGCAGAGAGCCCAAT GGGGCTGCCGGCGGCGATGCATGCCCTGCTCGCGGAGAGACGCGTGTGTG TTTGCGGTAGCCCTGCCGATACGTACACAGCAGTTTGCTCGCGACTCTCC TCTTCGGAGCGTGACTCGTTGTCTTCTTCTTGTTTGCGTTTTCTCTTTCT CTCTCCCTACGTCGGCGCCTGCCTGCCTGCCTGCCTGCCTGCTTGCACGG GAATATTCCTGGAATTTTCAGGCTTACCGTTGGATCGACGACTCGCGAGA CGACTACACCAAGGAGCGTCTGGAGGCCCTCGACGATGCCTTCAAGCTAT TCCGGTAAGTATGTCATATGTTATGTCATGTGTTGTACCATTTTTCAGCG TCGGTTTCGTTTTGCTGTCGATCTTAAGTTGTTTTATTTTTGTATCAATA TTCTGTGTATCCATAGCGCCGTCTAAGCCTCATCCTGTGCACAAACGAAA TGTCGAACAGGGGGGGGGGGTGTTTGTTTTGTATTGTTTGCGGCCCCCTC GGCGGTACACCCGGGCTTTTGCTCGAATAGCCAGCTCTGCATCGCTCTCC CTACCAAGATTTCCAGGCGGAGCAACTTTTTCAGCCGGCACTTTCGAGCG GGCGCCGGGACATGTCGATGGCAGGCAGTTCACCCTCGGGCGACGCATTG TTCATGTCATTTGCTTCCAGCCCCCTTCCCGCCTCTTCCCTAGTGTAGTG TGTGTGTATGTGTGTGTGTGTGTTCAAAGGAGTTAACTCTCGATCGCCGC AGCGGTAGTTGACGGAGACCCAACACCGTTCGTCGCTTTCCCCGCCTGTC TTGCACGCACTCTGAAAGGACCTCATGTTTCATATGTTTCGTACAACGTA GATTAAAGAGCAGGAAACCACGGACATGCCAATGAAAGTTGTAACTCACT GAGGTTTGTGCTTCCATTGTTTTCTCCGGAGGCTGGACCTGTTGAGTCCA GCCTCCTCCACGATCACGGGGCCGAGTGAGTCACAGCAGTCTTCAGAAAT AAGAGGGCGCCGGCGAACGCCGTGAGGGTGGCGCTCGTATGTAGTCGATA TACACGACGTGGTCGCCGCCGCCGGCCGAATGGTGCAGGAGGCTGCGCAG TTGCCACGACCTTTGTTTTTTGAGAGAGAGATAAGAGAAAGAGGGATGTA TGTATGTATCTATGTGCCCCTTTTACACGTGCACTGGTTAAGTTAACCTT GCGTTTTTGGCACGCTGAGAGTGACGCCCTTTATTGGTCAACGTATGTCG CGGTGTCGGTACTATTTGGCAATAAATCCAACAACACCACGATGCGTATC TATGTTCGCATGTGTTGAAACCTCTGTCCGATGTGCCCCCCCCTTCCCCC CCTCCCTACCTCCCTCTCCCGTTGTTCACCTACGATGCCTCCATCTCGTT TATTTATCCCCCCCCTACAAAACCCTACCGTGCGATCTCGTTCTATCCCA AAAGGTGTCACACGATCATGAACTGCACCAAGACGTGCCCGAAGCACCTC AACCCCGGCAAGGCGATCGCCAACATCAAGAAGAGGGTGCACGCGCTCTA GGCCTCGCGATGCACCACAAGCAAAGGGTTACGTACACTTATTGGCCCAG ATATGAGTGGGGACCTTTTTTCTGGTCGGCGTGTGCGTCACCCGTGGAGG GCCGGGCCGGCGGCAGCGGCAGCGGCGGCTGCCGTTCTGTTCGCCCTTAA GGCTTGCGCGGCGGGAAAAGTAACCGTCGTTTTTTTTGTTTCTGCTGTCT GGGGGAGAAGAGGAGGAGGGAGGGATTGTTGTCGTGGAGAGCCAATTTTG AGCGCGCACCTTGTTACAATAACTCGTGCGTGTAAAGTCGATCGTGGGTG TTTTTCTTGCGGTGTGTGTGGCTGGCTGCTGCACAGCAAGCATTCAGTCC TCTCCCGGGGCGCGGCGCGCGCGCGCGGGGGGGCGTGCATCACGCGCGTG GCAATAAAGAACGACGAGCAGTGGCATCAGGGGGGAGGCGGGGTATTTGT GGGAGTGGGCAGAGAGAGAGAGCACGACACGAACCTAAAAGCTGCCGGTG CGTTTTTTGTGTGTGTAATTTTAACCGCGTCGTTTTCTGTTTTGGTGGGG GAGCATCATTCTCCCCCCCCCCCCCTCCCCGGGAGGAGCCAGGTTTGTTT TTTCGGAGCGCTTGCTTCCGTCCGCTGGCAAGGGGTTGCTCTCACTGGCT GGTCATGCGAGACGTTGCTGTTTTAAGTATCCGCCGGCAAGGGGTTGCTC TTACTGGCTGGTCATGAAAGGCGTTGCTGCTTAAGCCCTGCATACATGAA ACGGCTCAAGTTTTAAGTTTTACCCTTGGGCTTACTTCCCCGTGTTCCAC GGAGCACATCCAATCATTGCATGGGCTCTGTCTGCTACATACATATCGTT GATCTTCAACGGAGACAATTTTCGAGTGCTCTTGAGTAGTAACGTTTTGT AGGTTTCGAGACCGAAAGCCCGCACGCATGTTTGACGCGCGACATTGGCG GCGGCGGGGGGGGGGCTGTTGTCAACCAAAGGTAAAACAAAAAAAAAACA CAAAATACCATAAAATCAAAATCAAACTTGGGCCTCTGGTTGGCCAAAGG GGGAGCCGAATCGGGCGTCGGAGCTTGGAGTGAGCGGACGGCAAGCTGTT GGGGCAGAGAGAGGACATACGTACCTATGTAGGCGTGCTTTTTTGGATGA GCATGCCTTTTCTTACAGAAATACTACTTTAATGGTTGTATTTTGCGGTT TTTCTTTCCTCGCCAGCGCGCAGAGAGACGGGGCCGAAAAACGAAAACCT CGGGGCCCCGTGGAGATGGCTTTGTTTCTCCCCGCCGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig1103:20439..27826-

>mRNA_L-elsbetiae_contig1103.933.1 ID=mRNA_L-elsbetiae_contig1103.933.1|Name=mRNA_L-elsbetiae_contig1103.933.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1656bp|location=Sequence derived from alignment at L-elsbetiae_contig1103:20439..27826- (Laminarionema elsbetiae ELsaHSoW15)
CTATCGCTCCGACACGCAGGACCAAAAGCCGTACATGAAGACTTACCCGG
TGGACATGGACGACTGCGGGCCCATGGTGCTGGACGCGCTCATCAAGATC
AAGAACGAACAGCTATCGCTCCGACACGCAGGACCAAAAGCCGTACATGA
AGACTTACCCGGTGGACATGGACGACTGCGGGCCCATGGTGCTGGACGCG
CTCATCAAGATCAAGAACGAACAGGACCCCACGTTGACGTTCCGGCGGTC
TTGCCGCGAGGGCATCTGCGGGTCGTGCGCGATGAACATCAACGGGAAGA
ACACGCTGGCGTGCCTCTGCGCCATCGAAGAGGACCCCACGTTGACGTTC
CGGCGGTCTTGCCGCGAGGGCATCTGCGGGTCGTGCGCGATGAACATCAA
CGGGAAGAACACGCTGGCGTGCCTCTGCGCCATCGAAGAGGACTCCGCCC
CCATGAAGGTGTACCCCCTGCCGCACATGTTCGTCCAGAAGGACCTCGTG
CCGGACATGGCCAACTTCTACGAGCAGTACAAGAGCATCGAGCCGTGGCT
GAAGACGAAGACCGAGAAAGACCCGGACGTCGAGCACCTGCAGGACTCCG
CCCCCATGAAGGTGTACCCCCTGCCGCACATGTTCGTCCAGAAGGACCTC
GTGCCGGACATGGCCAACTTCTACGAGCAGTACAAGAGCATCGAGCCGTG
GCTGAAGACGAAGACCGAGAAAGACCCGGACGTCGAGCACCTGCAGTCCA
TCCAGGACCGCAAGAAACTAGACGGTATGTACGAGTGCATTCTGTGCGCC
TGCTGCAGCACGTCGTGCCCGTCGTACTGGTGGAACGCCGACAAGTACCT
CGGCCCCGCGGTCCTCATGCAGTCCATCCAGGACCGCAAGAAACTAGACG
GTATGTACGAGTGCATTCTGTGCGCCTGCTGCAGCACGTCGTGCCCGTCG
TACTGGTGGAACGCCGACAAGTACCTCGGCCCCGCGGTCCTCATGCAGGC
TTACCGTTGGATCGACGACTCGCGAGACGACTACACCAAGGAGCGTCTGG
AGGCCCTCGACGATGCCTTCAAGCTATTCCGGCTTACCGTTGGATCGACG
ACTCGCGAGACGACTACACCAAGGAGCGTCTGGAGGCCCTCGACGATGCC
TTCAAGCTATTCCGGTGTCACACGATCATGAACTGCACCAAGACGTGCCC
GAAGCACCTCAACCCCGGCAAGGCGATCGCCAACATCAAGAAGAGGGTGC
ACGCGCTCTAGGCCTCGCGATGCACCACAAGCAAAGGGTTACGTACACTT
ATTGGCCCAGATATGAGTGGGGACCTTTTTTCTGGTCGGCGTGTGCGTCA
CCCGTGGAGGGCCGGGCCGGCGGCAGCGGCAGCGGCGGCTGCCGTTCTGT
TCGCCCTTAAGTGTCACACGATCATGAACTGCACCAAGACGTGCCCGAAG
CACCTCAACCCCGGCAAGGCGATCGCCAACATCAAGAAGAGGGTGCACGC
GCTCTAGGCCTCGCGATGCACCACAAGCAAAGGGTTACGTACACTTATTG
GCCCAGATATGAGTGGGGACCTTTTTTCTGGTCGGCGTGTGCGTCACCCG
TGGAGGGCCGGGCCGGCGGCAGCGGCAGCGGCGGCTGCCGTTCTGTTCGC
CCTTAA
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