mRNA_L-elsbetiae_contig1103.933.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15
Overview
Homology
BLAST of mRNA_L-elsbetiae_contig1103.933.1 vs. uniprot
Match: D7FWF5_ECTSI (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWF5_ECTSI) HSP 1 Score: 459 bits (1180), Expect = 9.400e-156 Identity = 212/220 (96.36%), Postives = 217/220 (98.64%), Query Frame = 2 Query: 17 QDQKPYMKTYPVDMDDCGPMVLDALIKIKNEQDPTLTFRRSCREGICGSCAMNINGKNTLACLCAIEEDSAPMKVYPLPHMFVQKDLVPDMANFYEQYKSIEPWLKTKTEKDPDVEHLQSIQDRKKLDGMYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWIDDSRDDYTKERLEALDDAFKLFRCHTIMNCTKTCPKHLNPGKAIANIKKRVHAL 676 +DQKPYMKTYP+D DDCGPMVLDALIKIKNEQDPTLTFRRSCREGICGSCAMNINGKNTLACLCAIEEDSAPMK+YPLPHMFVQKDLVPDM NFYEQYKSIEPWLKTK +KDPDVEHLQSIQDRKKLDGMYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWIDDSRDDYTKERLE+LDDAFKLFRCHTIMNCTKTCPKHLNPGKAIANIKKRVHAL Sbjct: 61 KDQKPYMKTYPIDRDDCGPMVLDALIKIKNEQDPTLTFRRSCREGICGSCAMNINGKNTLACLCAIEEDSAPMKIYPLPHMFVQKDLVPDMTNFYEQYKSIEPWLKTKKDKDPDVEHLQSIQDRKKLDGMYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWIDDSRDDYTKERLESLDDAFKLFRCHTIMNCTKTCPKHLNPGKAIANIKKRVHAL 280
BLAST of mRNA_L-elsbetiae_contig1103.933.1 vs. uniprot
Match: A0A6H5JQA7_9PHAE (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JQA7_9PHAE) HSP 1 Score: 452 bits (1162), Expect = 1.340e-153 Identity = 213/229 (93.01%), Postives = 216/229 (94.32%), Query Frame = 2 Query: 17 QDQKPYMKTYPVDMDDCGPMVLDALIKIKNEQDPTLTFRRSCREGICGSCAMNINGKNTLACLCAIEEDSAPMKVYPLPHMFVQKDLVPDMANFYEQYKSIEPWLKTKTEKDPDVEHLQSIQDRKKLDGMYECILCACCSTSCPSYWWNADKYLGPAVLMQ---------AYRWIDDSRDDYTKERLEALDDAFKLFRCHTIMNCTKTCPKHLNPGKAIANIKKRVHAL 676 QDQKPYMKTYP+D DDCGPMVLDALIKIKNEQDPTLTFRRSCREGICGSCAMNINGKNTLACLCAIEEDSAPMK+YPLPHMFVQKDLVPDM NFYEQYKSIEPWLKTK +KDPDVEHLQSIQDRKKLDGMYECILCACCSTSCPSYWWNADKYLGPAVLMQ AYRWIDDSRDDYTKERLE LDDAFKLFRCHTIMNCTKTCPKHLNPGKAIANIKKRVHAL Sbjct: 16 QDQKPYMKTYPIDRDDCGPMVLDALIKIKNEQDPTLTFRRSCREGICGSCAMNINGKNTLACLCAIEEDSAPMKIYPLPHMFVQKDLVPDMTNFYEQYKSIEPWLKTKKDKDPDVEHLQSIQDRKKLDGMYECILCACCSTSCPSYWWNADKYLGPAVLMQGGVEVGAVEAYRWIDDSRDDYTKERLELLDDAFKLFRCHTIMNCTKTCPKHLNPGKAIANIKKRVHAL 244
BLAST of mRNA_L-elsbetiae_contig1103.933.1 vs. uniprot
Match: A0A836C854_9STRA (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C854_9STRA) HSP 1 Score: 399 bits (1025), Expect = 1.290e-132 Identity = 183/226 (80.97%), Postives = 207/226 (91.59%), Query Frame = 2 Query: 2 YRSDT-QDQKPYMKTYPVDMDDCGPMVLDALIKIKNEQDPTLTFRRSCREGICGSCAMNINGKNTLACLCAIEEDSAPMKVYPLPHMFVQKDLVPDMANFYEQYKSIEPWLKTKTEKDPDVEHLQSIQDRKKLDGMYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWIDDSRDDYTKERLEALDDAFKLFRCHTIMNCTKTCPKHLNPGKAIANIKKRVHAL 676 YR D Q QKPY+ TYPVD+ +CGPMVLDAL+KIKNEQDPTLTFRRSCREGICGSCAMNI+G+NTLACLC I+ +S+ +KV PLPHM+V KDLVPDM NFY+QYKSIEPWLKTKT K D EHLQS++DRKKLDGMYECI+CACCST+CPSYWWN DKYLGPAVLMQAYRWI+DSRD+YT+ERLE LDDAFKL+RCHTIMNC++TCPKHLNPGKAIA+IKKR+ AL Sbjct: 38 YRWDPEQKQKPYVSTYPVDLSECGPMVLDALLKIKNEQDPTLTFRRSCREGICGSCAMNIDGRNTLACLCYIDRNSSSIKVNPLPHMYVVKDLVPDMTNFYDQYKSIEPWLKTKTPKKDDKEHLQSVEDRKKLDGMYECIMCACCSTACPSYWWNGDKYLGPAVLMQAYRWIEDSRDEYTRERLEQLDDAFKLYRCHTIMNCSQTCPKHLNPGKAIAHIKKRMMAL 263
BLAST of mRNA_L-elsbetiae_contig1103.933.1 vs. uniprot
Match: A0A835Z536_9STRA (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z536_9STRA) HSP 1 Score: 397 bits (1021), Expect = 5.560e-132 Identity = 185/226 (81.86%), Postives = 205/226 (90.71%), Query Frame = 2 Query: 2 YRSDT-QDQKPYMKTYPVDMDDCGPMVLDALIKIKNEQDPTLTFRRSCREGICGSCAMNINGKNTLACLCAIEEDSAPMKVYPLPHMFVQKDLVPDMANFYEQYKSIEPWLKTKTEKDPDVEHLQSIQDRKKLDGMYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWIDDSRDDYTKERLEALDDAFKLFRCHTIMNCTKTCPKHLNPGKAIANIKKRVHAL 676 YR D Q QKPY+ TYPVD+D+CGPMVLDAL+KIKNEQDPTLTFRRSCREGICGSCAMNING+NTLACL I++ S+ KV PLPHM+V KDLVPDM NFY+QYKSIEPWLKTKT K D EHLQSI DRKKLDGMYECILCACCSTSCPSYWWN DKYLGPAVLMQAYRWI+DSRD++T+ERLE LDDAFKL+RCHTIMNC++TCPKHLNPGKAIA+IKKR+ A+ Sbjct: 40 YRWDPEQRQKPYVSTYPVDLDECGPMVLDALLKIKNEQDPTLTFRRSCREGICGSCAMNINGRNTLACLAYIDKSSSSTKVNPLPHMYVVKDLVPDMTNFYDQYKSIEPWLKTKTPKKDDKEHLQSIADRKKLDGMYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWIEDSRDEFTRERLEQLDDAFKLYRCHTIMNCSQTCPKHLNPGKAIAHIKKRMMAI 265
BLAST of mRNA_L-elsbetiae_contig1103.933.1 vs. uniprot
Match: W7U0Z2_9STRA (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7U0Z2_9STRA) HSP 1 Score: 392 bits (1008), Expect = 8.880e-130 Identity = 184/227 (81.06%), Postives = 203/227 (89.43%), Query Frame = 2 Query: 2 YRSDT-QDQKPYMKTYPVDMDDCGPMVLDALIKIKNEQDPTLTFRRSCREGICGSCAMNINGKNTLACLCAIEEDSAPMKVYPLPHMFVQKDLVPDMANFYEQYKSIEPWLKTKT--EKDPDVEHLQSIQDRKKLDGMYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWIDDSRDDYTKERLEALDDAFKLFRCHTIMNCTKTCPKHLNPGKAIANIKKRVHA 673 YR D Q+QKPY+ TYPVD+DDCGPMVLDAL KIKNEQDPTLTFRRSCREGICGSCAMNI+G NTLACL I + P K+YPLPHM+V KDLVPDM NFY+QYKSIEPWL+TK KDP+ EHLQS +DRKKLDGMYECILCACCST+CPSYWW ADKYLGPAVLMQAYRWI+DSRD+YTKERLEALDD+FKL+RCHTIMNCTK CPKHLNPG+AIA+IKKR+ A Sbjct: 54 YRWDPEQNQKPYLSTYPVDLDDCGPMVLDALFKIKNEQDPTLTFRRSCREGICGSCAMNIDGTNTLACLSYINKGPEPTKIYPLPHMYVLKDLVPDMTNFYDQYKSIEPWLQTKAVEAKDPNKEHLQSKEDRKKLDGMYECILCACCSTACPSYWWAADKYLGPAVLMQAYRWIEDSRDEYTKERLEALDDSFKLYRCHTIMNCTKVCPKHLNPGRAIAHIKKRLAA 280
BLAST of mRNA_L-elsbetiae_contig1103.933.1 vs. uniprot
Match: A0A7R9W5S4_9STRA (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial n=1 Tax=Pseudictyota dubia TaxID=2749911 RepID=A0A7R9W5S4_9STRA) HSP 1 Score: 383 bits (984), Expect = 1.500e-126 Identity = 183/230 (79.57%), Postives = 199/230 (86.52%), Query Frame = 2 Query: 2 YRSDT-QDQKPYMKTYPVDMDDCGPMVLDALIKIKNEQDPTLTFRRSCREGICGSCAMNINGKNTLACLCAIEEDSA------PMKVYPLPHMFVQKDLVPDMANFYEQYKSIEPWLKTKTEKDP-DVEHLQSIQDRKKLDGMYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWIDDSRDDYTKERLEALDDAFKLFRCHTIMNCTKTCPKHLNPGKAIANIKKRV 667 YR D Q QKPY+ TYPVD++DCGPMVLDALIKIKNEQDPTLTFRRSCREGICGSCAMNI+G NTLACLC IE + K+YPLPHM+V KDLVPDM NFYEQY+SIEPWLK K K+P E+LQS +DR KLDGMYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWI+DSRDD+TKERLE LDDAFKL+RCHTIMNCTK CPKHLNPGKAI NIKK++ Sbjct: 27 YRWDPDQRQKPYLSTYPVDLNDCGPMVLDALIKIKNEQDPTLTFRRSCREGICGSCAMNIDGTNTLACLCYIEPKGSGDTSGKATKIYPLPHMYVVKDLVPDMGNFYEQYRSIEPWLKKKKGKEPGQAEYLQSREDRAKLDGMYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWIEDSRDDFTKERLEDLDDAFKLYRCHTIMNCTKVCPKHLNPGKAIGNIKKKL 256
BLAST of mRNA_L-elsbetiae_contig1103.933.1 vs. uniprot
Match: A0A7S0PK69_9STRA (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial n=2 Tax=Leptocylindrus aporus TaxID=1398097 RepID=A0A7S0PK69_9STRA) HSP 1 Score: 379 bits (974), Expect = 7.860e-125 Identity = 180/225 (80.00%), Postives = 202/225 (89.78%), Query Frame = 2 Query: 2 YRSDT-QDQKPYMKTYPVDMDDCGPMVLDALIKIKNEQDPTLTFRRSCREGICGSCAMNINGKNTLACLCAIEEDSAPM-KVYPLPHMFVQKDLVPDMANFYEQYKSIEPWLKTKTEKDP-DVEHLQSIQDRKKLDGMYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWIDDSRDDYTKERLEALDDAFKLFRCHTIMNCTKTCPKHLNPGKAIANIKKRV 667 YR D Q QKPY+ TYPVD+++CGPMVLDALIKIKNEQDPTLTFRRSCREGICGSCAMNI+G NTLACLC I++ SA K+YPLPHM+V KDLVPDM+NFYEQY+SIEPWL+T EK+ E LQ+ ++R KLDGMYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWI+DSRD++TKERLE LDDAFKL+RCHTIMNCTK CPKHLNPGKAIANIKK++ Sbjct: 42 YRWDPEQKQKPYISTYPVDLNNCGPMVLDALIKIKNEQDPTLTFRRSCREGICGSCAMNIDGTNTLACLCYIDDKSAAATKIYPLPHMYVVKDLVPDMSNFYEQYRSIEPWLQTTKEKEEGQKEWLQTRENRAKLDGMYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWIEDSRDEFTKERLEELDDAFKLYRCHTIMNCTKVCPKHLNPGKAIANIKKKL 266
BLAST of mRNA_L-elsbetiae_contig1103.933.1 vs. uniprot
Match: A0A7S0LTD8_9EUKA (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial n=1 Tax=Coccolithus braarudii TaxID=221442 RepID=A0A7S0LTD8_9EUKA) HSP 1 Score: 380 bits (975), Expect = 3.660e-124 Identity = 175/221 (79.19%), Postives = 194/221 (87.78%), Query Frame = 2 Query: 2 YRSDTQDQK-PYMKTYPVDMDDCGPMVLDALIKIKNEQDPTLTFRRSCREGICGSCAMNINGKNTLACLCAIEEDSAPMKVYPLPHMFVQKDLVPDMANFYEQYKSIEPWLKTKTEKDPDVEHLQSIQDRKKLDGMYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWIDDSRDDYTKERLEALDDAFKLFRCHTIMNCTKTCPKHLNPGKAIANIKK 661 YR D K PY++ Y VD+D+CGPMVLDALIKIKNEQD TLTFRRSCREGICGSCAMNING NTLACLC I +DS PM +YPLPHM + KDLVPD++NFYEQYKSI+PWL+T EKDP+ EHLQS++DRKKLDGMYECILCACCSTSCPSYWWN DKYLGPAVLMQAYRWI DSRD T+ERL ALDD +KL+RCHTIMNCTK CPKHLNPG+AIA +KK Sbjct: 96 YRWDPDSSKDPYVQNYSVDLDECGPMVLDALIKIKNEQDQTLTFRRSCREGICGSCAMNINGGNTLACLCNITDDSEPMTIYPLPHMEIVKDLVPDLSNFYEQYKSIQPWLQTDVEKDPNQEHLQSVEDRKKLDGMYECILCACCSTSCPSYWWNGDKYLGPAVLMQAYRWIADSRDTKTEERLAALDDQWKLYRCHTIMNCTKACPKHLNPGQAIARVKK 316
BLAST of mRNA_L-elsbetiae_contig1103.933.1 vs. uniprot
Match: A0A7S2LAL1_9STRA (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2LAL1_9STRA) HSP 1 Score: 376 bits (965), Expect = 2.430e-123 Identity = 179/225 (79.56%), Postives = 199/225 (88.44%), Query Frame = 2 Query: 2 YRSDT-QDQKPYMKTYPVDMDDCGPMVLDALIKIKNEQDPTLTFRRSCREGICGSCAMNINGKNTLACLCAIE-EDSAPMKVYPLPHMFVQKDLVPDMANFYEQYKSIEPWLKTKTEKDP-DVEHLQSIQDRKKLDGMYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWIDDSRDDYTKERLEALDDAFKLFRCHTIMNCTKTCPKHLNPGKAIANIKKRV 667 YR D Q QKPY+ T+PVD++DCGPMVLDALIKIKNEQDPTLTFRRSCREGICGSCAMNI+G NTLACLC I E S+ K+YPLPHM+V KDLVPDM+NFYEQY+SIEPWL+T K+P E LQ+ +DR KLDGMYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWI+DSRDDY K+RL LDDAFKL+RCHTIMNCTK CPK+LNPGKAIANIKK++ Sbjct: 49 YRWDPEQKQKPYISTFPVDLNDCGPMVLDALIKIKNEQDPTLTFRRSCREGICGSCAMNIDGSNTLACLCYINNESSSATKIYPLPHMYVIKDLVPDMSNFYEQYRSIEPWLQTVQSKEPGQKEWLQTKEDRAKLDGMYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWIEDSRDDYGKKRLAELDDAFKLYRCHTIMNCTKVCPKNLNPGKAIANIKKKL 273
BLAST of mRNA_L-elsbetiae_contig1103.933.1 vs. uniprot
Match: B8BYI4_THAPS (Succinate dehydrogenase [ubiquinone] iron-sulfur subunit, mitochondrial (Fragment) n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BYI4_THAPS) HSP 1 Score: 373 bits (957), Expect = 9.480e-123 Identity = 173/223 (77.58%), Postives = 196/223 (87.89%), Query Frame = 2 Query: 23 QKPYMKTYPVDMDDCGPMVLDALIKIKNEQDPTLTFRRSCREGICGSCAMNINGKNTLACLCAIEEDSAP-------MKVYPLPHMFVQKDLVPDMANFYEQYKSIEPWLKTKTEK-DPDVEHLQSIQDRKKLDGMYECILCACCSTSCPSYWWNADKYLGPAVLMQAYRWIDDSRDDYTKERLEALDDAFKLFRCHTIMNCTKTCPKHLNPGKAIANIKKRV 667 QKPY+ TYPVD++DCGPMVLDALIKIK+EQDPTLTFRRSCREGICGSCAMNING+NTLACLC IE+ MK+YPLPHM+V KDLVPDM NFYEQY+SIEPWL+TK K + E+LQ+ +DR KLDGMYECILCACCST+CPSYWWNADKYLGPAVLMQAYRWI+DSRDD+T +RL LDDAFKL+RCHTIMNC+K CPKHLNPGKAIA+IKK++ Sbjct: 15 QKPYLSTYPVDLNDCGPMVLDALIKIKSEQDPTLTFRRSCREGICGSCAMNINGRNTLACLCYIEDKEKKGSSGGDVMKIYPLPHMYVLKDLVPDMGNFYEQYRSIEPWLQTKDGKAEGQAEYLQTREDRAKLDGMYECILCACCSTACPSYWWNADKYLGPAVLMQAYRWIEDSRDDFTDKRLAELDDAFKLYRCHTIMNCSKVCPKHLNPGKAIAHIKKKL 237 The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig1103.933.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 25
Pagesback to topAlignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig1103.933.1 >prot_L-elsbetiae_contig1103.933.1 ID=prot_L-elsbetiae_contig1103.933.1|Name=mRNA_L-elsbetiae_contig1103.933.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=276bp LSLRHAGPKAVHEDLPGGHGRLRAHGAGRAHQDQERTGPHVDVPAVLPRGback to top mRNA from alignment at L-elsbetiae_contig1103:20439..27826- Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_L-elsbetiae_contig1103.933.1 ID=mRNA_L-elsbetiae_contig1103.933.1|Name=mRNA_L-elsbetiae_contig1103.933.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=7388bp|location=Sequence derived from alignment at L-elsbetiae_contig1103:20439..27826- (Laminarionema elsbetiae ELsaHSoW15)back to top Coding sequence (CDS) from alignment at L-elsbetiae_contig1103:20439..27826- >mRNA_L-elsbetiae_contig1103.933.1 ID=mRNA_L-elsbetiae_contig1103.933.1|Name=mRNA_L-elsbetiae_contig1103.933.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1656bp|location=Sequence derived from alignment at L-elsbetiae_contig1103:20439..27826- (Laminarionema elsbetiae ELsaHSoW15)back to top |