mRNA_L-elsbetiae_contig11010.920.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig11010.920.1
Unique NamemRNA_L-elsbetiae_contig11010.920.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig11010.920.1 vs. uniprot
Match: D8LQY7_ECTSI (TPR repeat-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LQY7_ECTSI)

HSP 1 Score: 57.0 bits (136), Expect = 6.800e-5
Identity = 40/73 (54.79%), Postives = 49/73 (67.12%), Query Frame = 1 
Query: 1081 GGDVSSLHGDEAV-VPG--VAGTRVITSSFALNSNHGDPNAAGGGSDAHNAVNCWSDGVFESSGDSTAEASGK 1290
            GG+VSSLHGDEA  +PG  V G+R    +FA NS+H D    GGG+      N WSDGVFESSG+ST  A+G+
Sbjct: 1027 GGEVSSLHGDEAPSIPGGRVYGSRQHCDAFADNSDHSDD---GGGN-----TNVWSDGVFESSGNSTPGAAGR 1091
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BLAST of mRNA_L-elsbetiae_contig11010.920.1 vs. uniprot
Match: A0A6H5LDX5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5LDX5_9PHAE)

HSP 1 Score: 56.6 bits (135), Expect = 9.330e-5
Identity = 41/93 (44.09%), Postives = 56/93 (60.22%), Query Frame = 1 
Query:   64 DDGMRGPVRVGRRFAAASPNTSRGXXXXXXXAFRXXXKMASFFDVYSRGSSRHGRSDSSSGSSYSLDSGADESATAXXXXV-----VRRNTRK 327
            DDGM+G +R+G RFA+A   + R        A+R    +ASFF++YS+G+SRH R DSSS S  S DS A++S  A          VRRN+R+
Sbjct: 1332 DDGMQGGIRIGARFASAP--SMRRRRSSGGSAYRRGH-LASFFEMYSKGNSRHRRGDSSSSSICSFDSPAEDSGGANRGNKKGISPVRRNSRR 1421
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig11010.920.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D8LQY7_ECTSI6.800e-554.79TPR repeat-containing protein n=1 Tax=Ectocarpus s... [more]
A0A6H5LDX5_9PHAE9.330e-544.09Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig11010contigL-elsbetiae_contig11010:1783..3518 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1354
Cds size1350
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815317.6799052-CDS-L-elsbetiae_contig11010:1782..20061622815317.6799052-CDS-L-elsbetiae_contig11010:1782..2006Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11010 1783..2006 +
1691682835.066773-CDS-L-elsbetiae_contig11010:1782..20061691682835.066773-CDS-L-elsbetiae_contig11010:1782..2006Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11010 1783..2006 +
1622815317.694525-CDS-L-elsbetiae_contig11010:2390..35161622815317.694525-CDS-L-elsbetiae_contig11010:2390..3516Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11010 2391..3516 +
1691682835.0786986-CDS-L-elsbetiae_contig11010:2390..35161691682835.0786986-CDS-L-elsbetiae_contig11010:2390..3516Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig11010 2391..3516 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig11010.920.1prot_L-elsbetiae_contig11010.920.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig11010 1783..3516 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig11010.920.1

>prot_L-elsbetiae_contig11010.920.1 ID=prot_L-elsbetiae_contig11010.920.1|Name=mRNA_L-elsbetiae_contig11010.920.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=450bp
TGGGAHAGHADPSQEDRKAAADDGMRGPVRVGRRFAAASPNTSRGGGGGK
RAAFRGGGKMASFFDVYSRGSSRHGRSDSSSGSSYSLDSGADESATAAAA
AVVRRNTRKTKGAPRRRDSTRLRRGRSGASGRSNSSATGKSGGGGRTSRT
SSTSRTSRDSGKTSGARGKSARGLRVARPKGSTVGPSSARKFRGGSGSGG
VEQQLERRRPVSCPATVSARMVARSGGGGVAGGSAADGISGVADGGGGKG
GVLAGDGKAWGAGRRSRSSGSIKAAPARSTRPPDLAYASSYSEDDETTPY
DSSEFSSDSSSSSPSSLSSSDDDDEDSSYSSSLRSSSVFSGSRPSSGGGS
SSNYGLDITGGGDVSSLHGDEAVVPGVAGTRVITSSFALNSNHGDPNAAG
GGSDAHNAVNCWSDGVFESSGDSTAEASGKPTRGGGAREGGQRSHAASAA
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mRNA from alignment at L-elsbetiae_contig11010:1783..3518+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig11010.920.1 ID=mRNA_L-elsbetiae_contig11010.920.1|Name=mRNA_L-elsbetiae_contig11010.920.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1736bp|location=Sequence derived from alignment at L-elsbetiae_contig11010:1783..3518+ (Laminarionema elsbetiae ELsaHSoW15)
ACCGGTGGTGGGGCCCATGCCGGTCACGCGGACCCCTCGCAGGAGGACAG
AAAAGCGGCGGCGGACGACGGCATGCGCGGGCCCGTGCGGGTGGGCAGGC
GGTTCGCGGCGGCCTCTCCTAACACCAGCAGGGGCGGCGGCGGCGGCAAG
CGGGCCGCCTTCCGCGGCGGCGGCAAGATGGCGTCGTTCTTCGACGTGTA
CAGCCGGGGCAGCAGCCGGCACGGGTGAGAGCACTCTCGATCGAGCGCGG
CCGGCCGATGTTTTTTTTTCCCCGGGGGTGTTCTTGGTTTGAGGGCGAAG
GCAGGACACGGGGGAGTAGCGGAGGGGGGGTGTCTCGTGCGTCTCTCGTG
AATGAAAAGTGTACACCGCGTAGCGTAGCGTAGCGTAGCGTTCAGGAGCT
GAGTCTAGTGGGTGTTTCGGTAGCCTGTAGCCCTGAACAGTTGATGCTTC
GCGTGTGGCTTAACGGCGACGGTGTAGTCTGAGTGAGGTCAGCGGTGCAT
GCGTCGACGGGCGAAGATGCAAAAGCTTGGGGAACGCCACGCCGTGCAAA
CGCTTTGTCTGTCTTCCGCCTTGACTCCCTCTTCCTCCCGTCTTGTTTGA
CCTGTCAGGCGGAGCGATTCCTCCAGCGGCAGCAGCTACTCGCTCGATTC
GGGCGCCGACGAAAGCGCCACAGCCGCCGCCGCCGCAGTGGTCCGCAGAA
ACACCAGAAAAACCAAAGGCGCCCCTAGACGAAGGGACTCCACGCGCTTG
AGGCGAGGAAGAAGCGGGGCCAGCGGCCGCAGCAACAGTTCCGCAACCGG
CAAGAGCGGCGGGGGTGGCAGGACCAGCAGGACCAGCAGCACCAGCCGGA
CCAGCAGAGACAGCGGCAAGACCAGCGGCGCCCGCGGAAAGTCCGCGAGA
GGGCTCAGAGTGGCCAGGCCCAAGGGCAGCACAGTCGGCCCCTCCTCGGC
TCGGAAGTTTCGCGGCGGCAGCGGCAGTGGTGGCGTGGAGCAGCAGTTGG
AGCGGCGGCGGCCGGTGTCCTGTCCCGCGACGGTCTCGGCCCGCATGGTG
GCGAGGAGCGGCGGCGGCGGAGTTGCCGGCGGATCCGCCGCCGACGGCAT
CAGCGGCGTCGCGGACGGAGGCGGAGGCAAGGGCGGCGTCCTCGCCGGGG
ACGGCAAGGCCTGGGGCGCGGGAAGAAGGAGCAGAAGTAGCGGCAGCATC
AAGGCAGCGCCGGCCCGCTCGACGAGACCTCCAGATCTCGCGTACGCGTC
CAGCTACTCGGAGGACGACGAGACCACTCCCTACGACTCTTCCGAGTTCT
CGTCGGATTCGTCTTCGTCGTCCCCGTCGTCCCTGTCCTCCTCGGACGAC
GACGATGAAGACTCTTCTTATTCCTCGTCGCTGCGGTCGTCGTCCGTCTT
TTCCGGGTCGCGCCCCTCTTCCGGCGGCGGCAGCAGCTCCAACTACGGCC
TGGACATCACCGGCGGGGGCGACGTCTCTAGCCTTCACGGCGACGAGGCG
GTCGTGCCCGGCGTCGCGGGAACTCGGGTGATCACCAGCTCCTTCGCCTT
GAACAGCAACCACGGTGACCCCAATGCCGCTGGGGGCGGCAGCGACGCGC
ACAACGCCGTCAATTGCTGGAGCGACGGCGTCTTCGAGAGCAGCGGGGAC
AGCACCGCTGAAGCCAGCGGGAAGCCCACCAGGGGTGGCGGCGCGCGCGA
GGGGGGGCAGAGGAGCCACGCCGCTTCCGCTGCTGC
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Coding sequence (CDS) from alignment at L-elsbetiae_contig11010:1783..3518+

>mRNA_L-elsbetiae_contig11010.920.1 ID=mRNA_L-elsbetiae_contig11010.920.1|Name=mRNA_L-elsbetiae_contig11010.920.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=2700bp|location=Sequence derived from alignment at L-elsbetiae_contig11010:1783..3518+ (Laminarionema elsbetiae ELsaHSoW15)
ACCGGTGGTGGGGCCCATGCCGGTCACGCGGACCCCTCGCAGGAGGACAG
AAAAGCGGCGGCGGACGACGGCATGCGCGGGCCCGTGCGGGTGGGCAGGC
GGTTCGCGGCGGCCTCTCCTAACACCAGCAGGGGCGGCGGCGGCGGCAAG
CGGGCCGCCTTCCGCGGCGGCGGCAAGATGGCGTCGTTCTTCGACGTGTA
CAGCCGGGGCAGCAGCCGGCACGGACCGGTGGTGGGGCCCATGCCGGTCA
CGCGGACCCCTCGCAGGAGGACAGAAAAGCGGCGGCGGACGACGGCATGC
GCGGGCCCGTGCGGGTGGGCAGGCGGTTCGCGGCGGCCTCTCCTAACACC
AGCAGGGGCGGCGGCGGCGGCAAGCGGGCCGCCTTCCGCGGCGGCGGCAA
GATGGCGTCGTTCTTCGACGTGTACAGCCGGGGCAGCAGCCGGCACGGGC
GGAGCGATTCCTCCAGCGGCAGCAGCTACTCGCTCGATTCGGGCGCCGAC
GAAAGCGCCACAGCCGCCGCCGCCGCAGTGGTCCGCAGAAACACCAGAAA
AACCAAAGGCGCCCCTAGACGAAGGGACTCCACGCGCTTGAGGCGAGGAA
GAAGCGGGGCCAGCGGCCGCAGCAACAGTTCCGCAACCGGCAAGAGCGGC
GGGGGTGGCAGGACCAGCAGGACCAGCAGCACCAGCCGGACCAGCAGAGA
CAGCGGCAAGACCAGCGGCGCCCGCGGAAAGTCCGCGAGAGGGCTCAGAG
TGGCCAGGCCCAAGGGCAGCACAGTCGGCCCCTCCTCGGCTCGGAAGTTT
CGCGGCGGCAGCGGCAGTGGTGGCGTGGAGCAGCAGTTGGAGCGGCGGCG
GCCGGTGTCCTGTCCCGCGACGGTCTCGGCCCGCATGGTGGCGAGGAGCG
GCGGCGGCGGAGTTGCCGGCGGATCCGCCGCCGACGGCATCAGCGGCGTC
GCGGACGGAGGCGGAGGCAAGGGCGGCGTCCTCGCCGGGGACGGCAAGGC
CTGGGGCGCGGGAAGAAGGAGCAGAAGTAGCGGCAGCATCAAGGCAGCGC
CGGCCCGCTCGACGAGACCTCCAGATCTCGCGTACGCGTCCAGCTACTCG
GAGGACGACGAGACCACTCCCTACGACTCTTCCGAGTTCTCGTCGGATTC
GTCTTCGTCGTCCCCGTCGTCCCTGTCCTCCTCGGACGACGACGATGAAG
ACTCTTCTTATTCCTCGTCGCTGCGGTCGTCGTCCGTCTTTTCCGGGTCG
CGCCCCTCTTCCGGCGGCGGCAGCAGCTCCAACTACGGCCTGGACATCAC
CGGCGGGGGCGACGTCTCTAGCCTTCACGGCGACGAGGCGGTCGTGCCCG
GCGTCGCGGGAACTCGGGTGATCACCAGCTCCTTCGCCTTGAACAGCAAC
CACGGTGACCCCAATGCCGCTGGGGGCGGCAGCGACGCGCACAACGCCGT
CAATTGCTGGAGCGACGGCGTCTTCGAGAGCAGCGGGGACAGCACCGCTG
AAGCCAGCGGGAAGCCCACCAGGGGTGGCGGCGCGCGCGAGGGGGGGCAG
AGGAGCCACGCCGCTTCCGCTGCTGCGGAGCGATTCCTCCAGCGGCAGCA
GCTACTCGCTCGATTCGGGCGCCGACGAAAGCGCCACAGCCGCCGCCGCC
GCAGTGGTCCGCAGAAACACCAGAAAAACCAAAGGCGCCCCTAGACGAAG
GGACTCCACGCGCTTGAGGCGAGGAAGAAGCGGGGCCAGCGGCCGCAGCA
ACAGTTCCGCAACCGGCAAGAGCGGCGGGGGTGGCAGGACCAGCAGGACC
AGCAGCACCAGCCGGACCAGCAGAGACAGCGGCAAGACCAGCGGCGCCCG
CGGAAAGTCCGCGAGAGGGCTCAGAGTGGCCAGGCCCAAGGGCAGCACAG
TCGGCCCCTCCTCGGCTCGGAAGTTTCGCGGCGGCAGCGGCAGTGGTGGC
GTGGAGCAGCAGTTGGAGCGGCGGCGGCCGGTGTCCTGTCCCGCGACGGT
CTCGGCCCGCATGGTGGCGAGGAGCGGCGGCGGCGGAGTTGCCGGCGGAT
CCGCCGCCGACGGCATCAGCGGCGTCGCGGACGGAGGCGGAGGCAAGGGC
GGCGTCCTCGCCGGGGACGGCAAGGCCTGGGGCGCGGGAAGAAGGAGCAG
AAGTAGCGGCAGCATCAAGGCAGCGCCGGCCCGCTCGACGAGACCTCCAG
ATCTCGCGTACGCGTCCAGCTACTCGGAGGACGACGAGACCACTCCCTAC
GACTCTTCCGAGTTCTCGTCGGATTCGTCTTCGTCGTCCCCGTCGTCCCT
GTCCTCCTCGGACGACGACGATGAAGACTCTTCTTATTCCTCGTCGCTGC
GGTCGTCGTCCGTCTTTTCCGGGTCGCGCCCCTCTTCCGGCGGCGGCAGC
AGCTCCAACTACGGCCTGGACATCACCGGCGGGGGCGACGTCTCTAGCCT
TCACGGCGACGAGGCGGTCGTGCCCGGCGTCGCGGGAACTCGGGTGATCA
CCAGCTCCTTCGCCTTGAACAGCAACCACGGTGACCCCAATGCCGCTGGG
GGCGGCAGCGACGCGCACAACGCCGTCAATTGCTGGAGCGACGGCGTCTT
CGAGAGCAGCGGGGACAGCACCGCTGAAGCCAGCGGGAAGCCCACCAGGG
GTGGCGGCGCGCGCGAGGGGGGGCAGAGGAGCCACGCCGCTTCCGCTGCT
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