mRNA_L-elsbetiae_contig10983.884.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10983.884.1
Unique NamemRNA_L-elsbetiae_contig10983.884.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
[Close]
BLAST of mRNA_L-elsbetiae_contig10983.884.1 vs. uniprot
Match: D7FIA3_ECTSI (Ankyrin repeat domain-containing protein 39 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FIA3_ECTSI)

HSP 1 Score: 57.8 bits (138), Expect = 2.870e-7
Identity = 25/38 (65.79%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:  454 KDKVGDRPANCIRRTKNPDGVAERLRNALLDLSDSEDT 567
            KDKVGD+P +CIRR +  +G+  RLRNALLDLSDSE++
Sbjct:   95 KDKVGDQPIHCIRRKRTSEGLVTRLRNALLDLSDSEES 132
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10983.884.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FIA3_ECTSI2.870e-765.79Ankyrin repeat domain-containing protein 39 n=1 Ta... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10983contigL-elsbetiae_contig10983:3043..4246 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size570
Cds size570
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10983.884.1prot_L-elsbetiae_contig10983.884.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10983 3043..4246 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815314.3918738-CDS-L-elsbetiae_contig10983:3042..31501622815314.3918738-CDS-L-elsbetiae_contig10983:3042..3150Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10983 3043..3150 -
1691682832.8242688-CDS-L-elsbetiae_contig10983:3042..31501691682832.8242688-CDS-L-elsbetiae_contig10983:3042..3150Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10983 3043..3150 -
1622815314.4021997-CDS-L-elsbetiae_contig10983:3288..34371622815314.4021997-CDS-L-elsbetiae_contig10983:3288..3437Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10983 3289..3437 -
1691682832.8328557-CDS-L-elsbetiae_contig10983:3288..34371691682832.8328557-CDS-L-elsbetiae_contig10983:3288..3437Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10983 3289..3437 -
1622815314.4186192-CDS-L-elsbetiae_contig10983:3635..38201622815314.4186192-CDS-L-elsbetiae_contig10983:3635..3820Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10983 3636..3820 -
1691682832.841225-CDS-L-elsbetiae_contig10983:3635..38201691682832.841225-CDS-L-elsbetiae_contig10983:3635..3820Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10983 3636..3820 -
1622815314.428986-CDS-L-elsbetiae_contig10983:4118..42461622815314.428986-CDS-L-elsbetiae_contig10983:4118..4246Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10983 4119..4246 -
1691682832.8497746-CDS-L-elsbetiae_contig10983:4118..42461691682832.8497746-CDS-L-elsbetiae_contig10983:4118..4246Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10983 4119..4246 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10983.884.1

>prot_L-elsbetiae_contig10983.884.1 ID=prot_L-elsbetiae_contig10983.884.1|Name=mRNA_L-elsbetiae_contig10983.884.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=190bp
SEERKKHERRRRRCPVVKIEKYLNNNEHGEGEKKEDGAAGSNRSLARTIM
QEDVAGFLRLVQEEGACVRDTDCHGWSPLHWACSRGSTVMTYAILKEMRS
SQEAGATDDAISNYLNATEELSGWTALHLATIAGKLDVVYLLLEAGCDSQ
VKDKVGDRPANCIRRTKNPDGVAERLRNALLDLSDSEDT*
back to top

mRNA from alignment at L-elsbetiae_contig10983:3043..4246-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10983.884.1 ID=mRNA_L-elsbetiae_contig10983.884.1|Name=mRNA_L-elsbetiae_contig10983.884.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1204bp|location=Sequence derived from alignment at L-elsbetiae_contig10983:3043..4246- (Laminarionema elsbetiae ELsaHSoW15)
TCTGAGGAGAGGAAAAAGCACGAGCGTCGACGACGCCGGTGTCCGGTCGT
GAAAATCGAAAAGTACTTGAACAACAATGAACATGGCGAAGGAGAGAAGA
AAGAGGACGGAGCGGCTGGAAGTAACAGGTGGATATCCAGTTACATAGCT
CACCTTCAACTCGCTACGCTACCGGGCTGATTAGCGGGGGGGGGCTCCGT
CTGGTGTATGTTAGAATCGTTTCAGCGTTTGTAGTCGGGACTACTACTGC
TATCTATGTGCTGTGACCACCAAAGGCTGTACAGTATACGTGCACCGCCC
CTGGACGTTCGTCTTTTACAACGCCTGTCCAAGCGAATATAGCTCGGTAA
CAGTAGTTTTTTGTTTTTTATCATCCATCGGTGAAATTTGTCCTTGAGGT
TCAATGCAAAAAACACCAATTTTCAGGTCGTTAGCCCGAACAATCATGCA
AGAGGACGTCGCCGGGTTCTTGCGCCTTGTGCAAGAAGAGGGTGCATGCG
TGCGGGATACTGATTGTCACGGGTGGTCACCACTGCACTGGGCGTGCTCG
CGAGGAAGCACTGTTATGACGTACGCCATCCTGAAAGAGATGCGAAGTTC
ACAGGAGGCAGGTGGGCACCTGCTTTTGTAATAATGCTGCCGCACAAGGG
CATACCATATCTTGTGAAGCCCTTGAACTGTGTGTCACACTTCGATATGT
TGCCCTAACTTGCGTCCAGACTAGTTTTCCTTCTCGCTTAGGTTCGTCGG
AAGTCGGAAGCAAAGGCTTGCCATTGATGTCACCACCACATCTGTCTTGT
AATCACCAGGTGCTACTGACGACGCCATCTCAAACTATTTAAACGCAACG
GAAGAGCTGAGCGGCTGGACGGCCCTCCACCTTGCGACTATTGCGGGAAA
GCTCGACGTTGTATATCTGCTATTGGAAGCGGGTTGTGACTCCCAAGTCA
AGGACAAGGTGAGAGGCTGCCCATAAACGCGCCGCATGGTTCCAGTGAGC
GCCTCTTGTCTACCATTGGCAGAAGCTAAGGGCAAGACGGTTGAACTAGC
ACTCCCTTCCCCTGGCCCAACCCCCCCCCTCATCCCATCTCGGTAGGTGG
GTGACCGGCCTGCCAACTGCATTAGGCGCACGAAGAATCCGGATGGGGTG
GCAGAGCGATTGCGGAATGCTCTGCTCGACCTCTCGGATAGCGAAGATAC
ATAG
back to top

Coding sequence (CDS) from alignment at L-elsbetiae_contig10983:3043..4246-

>mRNA_L-elsbetiae_contig10983.884.1 ID=mRNA_L-elsbetiae_contig10983.884.1|Name=mRNA_L-elsbetiae_contig10983.884.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1140bp|location=Sequence derived from alignment at L-elsbetiae_contig10983:3043..4246- (Laminarionema elsbetiae ELsaHSoW15)
TCTGAGGAGAGGAAAAAGCACGAGCGTCGACGACGCCGGTGTCCGGTCGT
GAAAATCGAAAAGTACTTGAACAACAATGAACATGGCGAAGGAGAGAAGA
AAGAGGACGGAGCGGCTGGAAGTAACAGTCTGAGGAGAGGAAAAAGCACG
AGCGTCGACGACGCCGGTGTCCGGTCGTGAAAATCGAAAAGTACTTGAAC
AACAATGAACATGGCGAAGGAGAGAAGAAAGAGGACGGAGCGGCTGGAAG
TAACAGGTCGTTAGCCCGAACAATCATGCAAGAGGACGTCGCCGGGTTCT
TGCGCCTTGTGCAAGAAGAGGGTGCATGCGTGCGGGATACTGATTGTCAC
GGGTGGTCACCACTGCACTGGGCGTGCTCGCGAGGAAGCACTGTTATGAC
GTACGCCATCCTGAAAGAGATGCGAAGTTCACAGGAGGCAGGTCGTTAGC
CCGAACAATCATGCAAGAGGACGTCGCCGGGTTCTTGCGCCTTGTGCAAG
AAGAGGGTGCATGCGTGCGGGATACTGATTGTCACGGGTGGTCACCACTG
CACTGGGCGTGCTCGCGAGGAAGCACTGTTATGACGTACGCCATCCTGAA
AGAGATGCGAAGTTCACAGGAGGCAGGTGCTACTGACGACGCCATCTCAA
ACTATTTAAACGCAACGGAAGAGCTGAGCGGCTGGACGGCCCTCCACCTT
GCGACTATTGCGGGAAAGCTCGACGTTGTATATCTGCTATTGGAAGCGGG
TTGTGACTCCCAAGTCAAGGACAAGGTGCTACTGACGACGCCATCTCAAA
CTATTTAAACGCAACGGAAGAGCTGAGCGGCTGGACGGCCCTCCACCTTG
CGACTATTGCGGGAAAGCTCGACGTTGTATATCTGCTATTGGAAGCGGGT
TGTGACTCCCAAGTCAAGGACAAGGTGGGTGACCGGCCTGCCAACTGCAT
TAGGCGCACGAAGAATCCGGATGGGGTGGCAGAGCGATTGCGGAATGCTC
TGCTCGACCTCTCGGATAGCGAAGATACATAGGTGGGTGACCGGCCTGCC
AACTGCATTAGGCGCACGAAGAATCCGGATGGGGTGGCAGAGCGATTGCG
GAATGCTCTGCTCGACCTCTCGGATAGCGAAGATACATAG
back to top