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Homology
BLAST of mRNA_L-elsbetiae_contig10979.879.1 vs. uniprot
Match: D7FKL1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKL1_ECTSI) HSP 1 Score: 87.4 bits (215), Expect = 1.070e-16 Identity = 67/80 (83.75%), Postives = 73/80 (91.25%), Query Frame = 1
Query: 208 MPGLGIQPSLESYSIGMTACAKGGQWQEALRLLREMQEDAHIKVDVVAXXXXXXXXXXXXXXXXXXXXXXXMPKSGVRPN 447
MPGLGI+PS+ESYSIG+TACAKGG+WQEAL LLREM+ED IK+DVV XXXXXXXXXXXXXXXXXXXXXX MP GVRPN
Sbjct: 1 MPGLGIRPSVESYSIGLTACAKGGRWQEALVLLREMEEDDEIKLDVVXXXXXXXXXXXXXXXXXXXXXXXDMPNVGVRPN 80
BLAST of mRNA_L-elsbetiae_contig10979.879.1 vs. uniprot
Match: A0A6H5K762_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K762_9PHAE) HSP 1 Score: 55.5 bits (132), Expect = 1.570e-5 Identity = 26/60 (43.33%), Postives = 41/60 (68.33%), Query Frame = 1
Query: 136 SQDGDWRRAMQILDDARSGGNSGRMPGLGIQPSLESYSIGMTACAKGGQWQEALRLLREM 315
S+ GDWR+A++ +D + ++PG I +SY + +TAC +GGQW++A+RLLREM
Sbjct: 144 SRSGDWRKALRAVDGMK------KLPGWLIDQ--KSYCMAITACGRGGQWEQAVRLLREM 195
BLAST of mRNA_L-elsbetiae_contig10979.879.1 vs. uniprot
Match: UPI001C5271F2 (pentatricopeptide repeat-containing protein At2g37310 n=1 Tax=Macadamia integrifolia TaxID=60698 RepID=UPI001C5271F2) HSP 1 Score: 54.7 bits (130), Expect = 2.810e-5 Identity = 34/96 (35.42%), Postives = 51/96 (53.12%), Query Frame = 1
Query: 52 AADLVTEMLSIGLVPDAVTFSATIAACCSQDGDWRRAMQILDDARSGGNSGRMPGLGIQPSLESYSIGMTACAKGGQWQEALRLLREMQEDAHIKV 339
A L EML+ G+ PD+VTF+A +AAC S G A +I D +PG GIQP++E Y+ + + G+ EA + +M + + KV
Sbjct: 466 AVFLFREMLTNGIRPDSVTFTAVLAAC-SHAGVVDEAWKIFD--------AMLPGYGIQPAVEQYACMVGVLCRAGKLSEAAEFISKMPIEPNAKV 552
BLAST of mRNA_L-elsbetiae_contig10979.879.1 vs. uniprot
Match: W7TZ34_9STRA (Pentatricopeptide repeat containing protein (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TZ34_9STRA) HSP 1 Score: 53.9 bits (128), Expect = 5.160e-5 Identity = 31/88 (35.23%), Postives = 47/88 (53.41%), Query Frame = 1
Query: 61 LVTEMLSIGLVPDAVTFSATIAACCSQDGDWRRAMQILDDARSGGNSGRMPGLGIQPSLESYSIGMTACAKGGQWQEALRLLREMQED 324
++ +ML GLVPD T TI C + WRRA+Q+L M GL + + +++ + C K G+W++ LR+LREM D
Sbjct: 556 VLEDMLGRGLVPDLKTVK-TIMRTCVKKLAWRRAVQLL----------HMEGLPLDVVI--FTMAINTCGKAGEWEQGLRVLREMDSD 630
BLAST of mRNA_L-elsbetiae_contig10979.879.1 vs. uniprot
Match: A0A4D9D4N9_9STRA (PPR_long domain-containing protein n=2 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D4N9_9STRA) HSP 1 Score: 53.9 bits (128), Expect = 5.650e-5 Identity = 31/88 (35.23%), Postives = 47/88 (53.41%), Query Frame = 1
Query: 61 LVTEMLSIGLVPDAVTFSATIAACCSQDGDWRRAMQILDDARSGGNSGRMPGLGIQPSLESYSIGMTACAKGGQWQEALRLLREMQED 324
++ +ML GLVPD T TI C + WRRA+Q+L M GL + + +++ + C K G+W++ LR+LREM D
Sbjct: 556 VLEDMLGRGLVPDLKTVK-TIMRTCVKKLAWRRAVQLL----------HMEGLPLDVVI--FTMAINTCGKAGEWEQGLRVLREMDSD 630
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Property Name | Value |
Taxonomic scope | Eukaryota |
Seed ortholog score | 88.2 |
Seed ortholog evalue | 4.8e-15 |
Seed eggNOG ortholog | 2880.D7FKL1 |
KEGG ko | ko:K17710 |
Hectar predicted targeting category | other localisation |
EggNOG free text desc. | endonuclease activity |
EggNOG OGs | KOG4197@1,KOG4197@2759 |
COG Functional cat. | S |
Best tax level | Eukaryota |
Best eggNOG OG | NA|NA|NA |
BRITE | ko00000,ko03016,ko03029 |
Ec32 ortholog description | Pentatricopeptide repeat |
Ec32 ortholog | Ec-09_000630.1 |
Exons | 4 |
Model size | 609 |
Cds size | 609 |
Stop | 0 |
Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Feature Name | Unique Name | Species | Type | Position |
1622815313.8902535-CDS-L-elsbetiae_contig10979:929..1133 | 1622815313.8902535-CDS-L-elsbetiae_contig10979:929..1133 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig10979 930..1133 - |
1691682832.4850633-CDS-L-elsbetiae_contig10979:929..1133 | 1691682832.4850633-CDS-L-elsbetiae_contig10979:929..1133 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig10979 930..1133 - |
1622815313.9021926-CDS-L-elsbetiae_contig10979:1851..1907 | 1622815313.9021926-CDS-L-elsbetiae_contig10979:1851..1907 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig10979 1852..1907 - |
1691682832.4986985-CDS-L-elsbetiae_contig10979:1851..1907 | 1691682832.4986985-CDS-L-elsbetiae_contig10979:1851..1907 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig10979 1852..1907 - |
1622815313.9128468-CDS-L-elsbetiae_contig10979:3290..3433 | 1622815313.9128468-CDS-L-elsbetiae_contig10979:3290..3433 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig10979 3291..3433 - |
1691682832.512557-CDS-L-elsbetiae_contig10979:3290..3433 | 1691682832.512557-CDS-L-elsbetiae_contig10979:3290..3433 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig10979 3291..3433 - |
1622815313.9293606-CDS-L-elsbetiae_contig10979:5823..6029 | 1622815313.9293606-CDS-L-elsbetiae_contig10979:5823..6029 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig10979 5824..6029 - |
1691682832.5225413-CDS-L-elsbetiae_contig10979:5823..6029 | 1691682832.5225413-CDS-L-elsbetiae_contig10979:5823..6029 | Laminarionema elsbetiae ELsaHSoW15 | CDS | L-elsbetiae_contig10979 5824..6029 - |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_L-elsbetiae_contig10979.879.1 >prot_L-elsbetiae_contig10979.879.1 ID=prot_L-elsbetiae_contig10979.879.1|Name=mRNA_L-elsbetiae_contig10979.879.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=203bp
VYNSAITLCARLEQPKMAADLVTEMLSIGLVPDAVTFSATIAACCSQDGD WRRAMQILDDARSGGNSGRMPGLGIQPSLESYSIGMTACAKGGQWQEALR LLREMQEDAHIKVDVVAYSAAITACANAGKWEEALAILDEMPKSGVRPNE VTCNAAIKACGDAGQWQHALSILRGMPNAGLSPTVITYNSAIAALGVAGK NEQ back to topmRNA from alignment at L-elsbetiae_contig10979:930..6029- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_L-elsbetiae_contig10979.879.1 ID=mRNA_L-elsbetiae_contig10979.879.1|Name=mRNA_L-elsbetiae_contig10979.879.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=5100bp|location=Sequence derived from alignment at L-elsbetiae_contig10979:930..6029- (Laminarionema elsbetiae ELsaHSoW15) GTGTACAACTCGGCCATCACCCTGTGCGCCCGCCTCGAGCAGCCCAAGAT
GGCCGCCGACCTGGTGACGGAAATGCTCTCGATCGGGCTGGTCCCGGACG
CGGTGACCTTCTCGGCGACGATTGCGGCGTGCTGCAGTCAGGACGGGGAC
TGGAGAAGGGCCATGCAGATCCTGGACGACGCGCGAAGCGGCGGCAACAG
CGGCAGGTACATACGTATGTGTACCGTCTTTTCCCGTTTCCGACCCCCAT
TCATGTCAAAAAAAAACTTTCGGCGCACGTACTCATGTATCGTGTCTCCT
GTATAGCTGTGCGGGCTATTTAACACTGGCGAATACGGAGTATAATGTCA
CAAGCATTTTAGGCCCTTAGAGCGTCTCATGCGGAGCTGTTACCGGCCGC
CGATCATGTCAGGAGGTGTAGAACTGGGAGCGCGTCATGCCTTAGCAGCG
GGAGGAGCTGTTGCAGGCCGCCAATCATGTCGGTGACATTTCAGGCCTTC
AAGCGTCTCGTGCCTTAGCAGCGGGAGGAACTGTTGCCGGCCGCCAATCA
TGTCGGTGACATTTTAGGCCTTCGAGCGTCTCGTGCCTTAGCAGCGGGAG
GAGCTGTTGCCGGCCGCCAATCAGGCCATCAGATTTCGACCTTTTTAAGT
GCACGATGCCTTCATAGCAGCGGGAGGAGCAAATATGCAACGCTGGGGCA
GTTTCGCCGGACCTGCGCACGTAAATCCTGCACGCAGGCCGGAGAGTTCG
TTTCGCTCTCCCTGTGTGCAGGGCGATGAGAATCCACCCCCTCCGTGCAG
GGCGCTGAAAACCCCCAAGCTCGGATGAGTCCCATGATCATATGCTCGTT
TTTGTTAGCCTTGGTTTATTTTGCTCTGAGATAAACTTGTGGGCTTCTTC
GCCTACTCCATTGCTCTCGTCAGTTTTGCCCTTCGTACATGAAACTTCGA
CCTCACCGTCGACGAGGGAAAGGGATGGCTGAACCCTTCTCGCGATAAAA
ATAGTAGGCAAGCACCGCCAACGGGGGGAGTGGGAGGGTGGCTTGGGGAA
AGGAACCCTTCTGTGTGACCACGGTTCAGTACTCTGACAAGATGTCCTCG
TGACAGGGAGCCCATCGAGCACTGGAAATGGAAATAAATGTCAAGAAGAA
AAAAAAAAAGCATGGGGGCGCGGTAGGTCTATGGTGCGCAAAAGGTACGG
GCCGCTCATTCACTTGCATTTCCACGGCAAGAGAACGAGGTTATTCCCTT
GCTGCTAGAGATGGCTCATTTTCTGACAGCGGTCGCGCGTTTTCCGTCCT
GTCCACGTCGTTGGTTCCCAATGATCGGCGTGAAATCGCGGTGGAAAATC
GCCGTTAGAATTGGGAACAACAGAGCTGCTCACTACTAAAGAAATACATG
AGCAGTGCGTGGTCAAAGCAACGTTGACACTGCGAAAAGGTGAGGAACAA
ATGAGACCCCCCCCCCACCCCCCACCCCCCCCCCCCCCCCCCCCCCCCCC
CCCACCCCCCCCCCCCCCCCCCCCACCCAATTACTGTGCTACCGTGCCCC
CCCCCCCCCTCCCCTCCCCCCCTCCCCCCCTCCCCCTATGTCCCAACCCC
ACACCCCCATGGTAACAGGAGTGTGAGGCTCGACGCAGTGATCTACAACT
CGGTCATGTCCTTGTGCGCGGATGCGGGAGAGTGGAAGCCCGTGCTGAAG
TTGCTGAAGCAGATGGCGCACGAGGACGGCATCAAGCCCGACCGCATCAG
CCTCGACTGCCTTATGAGGGCCTGTGGGAACGGCGGCGACTGGGAGCAAG
CGCTGGTAAGAGGGGGGGGGGGAACGCCATGTTCCATACCGGTGGGGGGG
GGGGATCAGTAGAATCTACTGTGTCGACTTGTCGTGAGTTCGAGTATTGT
GCTGCACAACGCTCGTTGCATATGGCCATATGGCACATACATGCATACAT
ACATACATACATACATGCACCGGGCGATCGTCGCAGCCTTTTGTCATTTC
TGCTGCTGCTGTTTTTAACGATCTTGTTTCGCGCACGCTGGCATGACCAT
GATGCTGGGTCAGTCAGTACATTTGCGGGTGTTTTTTTTCTTGTGAGTCG
TGCAATCCCGTTTGTATCCCTTGCCCTGGAACGTGCCCCGAGTCTGGCGA
ACTGTGTCAGTGTTTCGCTTTTGCGTCGTTTGCCAATCAATGCCACGAAA
ATTAACGACACAGACGGTTCGCTGTGCGGTCTCGTCTAGCCACCTGTCCT
CACCCCGCCCTATCCCCTTTCAGTCCGCGGGCTGTATGGATGTGATGGTT
ACGCTCTCACCGTCATGATGACGTCATGTGTCGGGTCTGTGTTGCCTGCC
GTTCGTCCGCGCTGCATATGACGTCATACATACGTGCAAGTGACGTGTTG
TCTCGCGCATATTTATCTCCAATCCGGCTGCCCTTATCTACTACTCGTAT
TTTTTTTCTTTTCTGCACCTTTTTGTTGGCGTGTGTATGTAACGTCTCCC
TCGGCTGCACCCCCCCCCTGCTGTTTTCCTGTCCGCCCCCCCCCCCCTCT
CTTTTCCTCCGTCCGTCCTTTTCTCCTTTCAGGCGGTCCTGGGGAGAATG
CCGGGGCTTGGGATTCAGCCTTCCCTGGAGAGCTACTCGATCGGGATGAC
GGCGTGCGCTAAGGGCGGGCAGTGGCAGGAGGCTCTCCGGCTGCTGCGCG
AGATGCAAGAGGACGCACACATCAAGGTCGACGTCGTCGGTACGATATTT
CGTTTGTCCCTTCTGTCTGTTCTTCATTCAGCCGAGAAAAGCTTAAACGC
GTGCTTATTATGTACCATAGGACTTCATTGTTGTTGTGCTACTTCTCTGC
TGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTGCTG
CTGCTGCTGCTGCCCTGATGTCTTGGTCCTAGCTTACGACTCCAACCATT
TGCGGATGGATGCCTCTTTTGATGCGGTGAACGTGTCACGACCGGGGATT
TTTGTTTCCCTCTACAATAAATAGATACTTCGATATATGGTCCCAGCAGT
TTTTTGGCACTTTATTTTGCCTACCCGGCATGTCTTGCGCCGTGGACCAC
TCCTCATTTGTCGGAAGGGGCGTGACCGCCCTGTCCCCGCCCTGCGCTCC
GGAGGTCCCCGCCCCTGTGTGGCTGCCCGCTCCGTGGTTCATCTGCTCCC
ACCCACCCACCCAAAGTTGTACCATACATACGTGTCGCCTTTCCTGTCCT
CTTTCCTGTTTTTCGCCCACGTTTTCCCTCTCCCGATCGATTCAATCGAT
GACTGATGGCGGTGTGTATTGATGAACGAGTAGAAAATAAAAAAGAAGAA
AAAGCCCCAGTGTTCACCTCCTCCTGTGTGACCCCGGTTGGTTCTAGTTG
TACAGACAAATGCACTGCAAAGTGTAGTACCTCTAAGTACACCGCAAGGT
GTAGTACACGTCTCCACTTGGGGGGACTGTCGCCAAAATAAATGGGAAGG
ACACACACACACACATATATCAGCAGTCCAAACACAAATATATAGGAGTA
TATACATACAAGATCCCCCTTCGGGGCAAGCTCTTGAGAGCACAGCGGCA
GGGGGTGATGCAAGACCAAAGCAAACAGGCGTAGGCAATCAGTAGTCCTA
ACTTCACAACTGAAAAAAACAGCAGCTGCTGCTGTGTTTTTGAGCACCGA
AGCAGCAGCTGCTGTGCATACTGAAACAAACAACTGCATATTTTCTGTGC
TGCCACTCCCTTGAACTAAACAGAGCTGTGCCGGTCTGTGCTCATCAGGT
ATATACAATAGCTGTCCAGCCTCCTGGCATGTGCTGCCATGCTCTAAACA
GCTGCTGTCATACTGACATTTATTTGGGCTATTGGAGGCCGATAGCCTAC
TGATTCAGATTTTTTCGGAACAGAAGTTCCCAGACACCAATTTGTATATG
TATCTATCCCTTGCTTTTCTCTCCGCTTCTGTCTCCCTCCATTCACTCGT
GGTTGCGTGCTTGCCTCTGCCTTGACCGCTCTGACCTCTCGCGTTGTGTT
TGCCGCTCGCTCCCGCGCGCGCAATCCGGTTATTGGCTGATCGCTGTGCC
CCCCCCTCCCCCTTTTGCTCAGCCTACTCGGCGGCGATAACGGCCTGCGC
GAACGCCGGAAAGTGGGAGGAGGCGCTGGTGAGCTTTTTGTCGTGGACCG
CGAAACGTCGGGAGGTTATAACCCACGTCTGACGTGTGCATGGACCTCTT
GTGTGTTCATTTCGTTCTATGTAGCCGGGAGGGAGCCCAAAGCTTTGACG
ATACTCTCTCTCACCGCCTCTGTGGCTTGGATATTGGGCGTGGTTTGGTT
GCCACACCGCGGGTGCCGACCGCGCACCGCGGTACACCGAGACACGGCCT
GTTTGGGGTGTGGCGCTCTTTTGCCGGCCTTTTGGTGGCCCTACACTCCC
CTCCCGTTGGGAAACACGAGCCGCGTAGGTATTATTCTTTTGTTGTTTTC
CGTTGTGCGCGCCGCGCACGCAACTACGCTACTTTCCGCCCTTGATGCAC
ATGACGCTTGGCACTTGGTATTGGTATCTACATGTCGTCATGCCACATTA
TCATTATCCTTTCTGTCAACATCCCCCCCCCCCTTCCTCGCCCCCCTCCC
CCGTCCCCCGTCCTGCTCCTGCTCCTTGCCGCTTCTCCGGACGCCTCCTT
GCCTGAACCCCGGCGCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCT
CCTCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCTCG
CCCCCACACCCNNNNNNNNNCCCCGGCGCCCCCCCCCCCTCCCTCTCTCT
GGCTCTCTCTCTGTGCCCCCCCCCCCCCTTGTAAATACCACCCCAGGCCA
TCCTGGATGAAATGCCCAAGTCCGGGGTGCGCCCCAACGAGGTGACCTGC
AACGCCGCCATCAAGGCCTGCGGCGATGCGGGCCAGTGGCAGCATGCCCT
CTCCATCCTCCGGGGCATGCCGAACGCCGGCTTGTCCCCCACCGTCATCA
CGTACAACTCGGCCATCGCCGCTCTCGGCGTCGCCGGGAAAAACGAGCAG
back to topCoding sequence (CDS) from alignment at L-elsbetiae_contig10979:930..6029- >mRNA_L-elsbetiae_contig10979.879.1 ID=mRNA_L-elsbetiae_contig10979.879.1|Name=mRNA_L-elsbetiae_contig10979.879.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=1218bp|location=Sequence derived from alignment at L-elsbetiae_contig10979:930..6029- (Laminarionema elsbetiae ELsaHSoW15) GTGTACAACTCGGCCATCACCCTGTGCGCCCGCCTCGAGCAGCCCAAGAT GGCCGCCGACCTGGTGACGGAAATGCTCTCGATCGGGCTGGTCCCGGACG CGGTGACCTTCTCGGCGACGATTGCGGCGTGCTGCAGTCAGGACGGGGAC TGGAGAAGGGCCATGCAGATCCTGGACGACGCGCGAAGCGGCGGCAACAG CGGCAGGTGTACAACTCGGCCATCACCCTGTGCGCCCGCCTCGAGCAGCC CAAGATGGCCGCCGACCTGGTGACGGAAATGCTCTCGATCGGGCTGGTCC CGGACGCGGTGACCTTCTCGGCGACGATTGCGGCGTGCTGCAGTCAGGAC GGGGACTGGAGAAGGGCCATGCAGATCCTGGACGACGCGCGAAGCGGCGG CAACAGCGGCAGAATGCCGGGGCTTGGGATTCAGCCTTCCCTGGAGAGCT ACTCGATCGGGATGACGGCGTGCGCTAAGGGCGGGCAGTGGCAGGAGGCT CTCCGGCTGCTGCGCGAGATGCAAGAGGACGCACACATCAAGGTCGACGT CGTCGAATGCCGGGGCTTGGGATTCAGCCTTCCCTGGAGAGCTACTCGAT CGGGATGACGGCGTGCGCTAAGGGCGGGCAGTGGCAGGAGGCTCTCCGGC TGCTGCGCGAGATGCAAGAGGACGCACACATCAAGGTCGACGTCGTCGCC TACTCGGCGGCGATAACGGCCTGCGCGAACGCCGGAAAGTGGGAGGAGGC GCTGCCTACTCGGCGGCGATAACGGCCTGCGCGAACGCCGGAAAGTGGGA GGAGGCGCTGGCCATCCTGGATGAAATGCCCAAGTCCGGGGTGCGCCCCA ACGAGGTGACCTGCAACGCCGCCATCAAGGCCTGCGGCGATGCGGGCCAG TGGCAGCATGCCCTCTCCATCCTCCGGGGCATGCCGAACGCCGGCTTGTC CCCCACCGTCATCACGTACAACTCGGCCATCGCCGCTCTCGGCGTCGCCG GGAAAAACGAGCAGGCCATCCTGGATGAAATGCCCAAGTCCGGGGTGCGC CCCAACGAGGTGACCTGCAACGCCGCCATCAAGGCCTGCGGCGATGCGGG CCAGTGGCAGCATGCCCTCTCCATCCTCCGGGGCATGCCGAACGCCGGCT TGTCCCCCACCGTCATCACGTACAACTCGGCCATCGCCGCTCTCGGCGTC GCCGGGAAAAACGAGCAG back to top
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