prot_L-elsbetiae_contig10979.879.1 (polypeptide) Laminarionema elsbetiae ELsaHSoW15

You are viewing a polypeptide, more information available on the corresponding mRNA page

Overview
NamemRNA_L-elsbetiae_contig10979.879.1
Unique Nameprot_L-elsbetiae_contig10979.879.1
Typepolypeptide
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Sequence length203
Homology
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BLAST of mRNA_L-elsbetiae_contig10979.879.1 vs. uniprot
Match: D7FKL1_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FKL1_ECTSI)

HSP 1 Score: 87.4 bits (215), Expect = 1.070e-16
Identity = 67/80 (83.75%), Postives = 73/80 (91.25%), Query Frame = 0 
Query:   70 MPGLGIQPSLESYSIGMTACAKGGQWQEALRLLREMQEDAHIKVDVVAXXXXXXXXXXXXXXXXXXXXXXXMPKSGVRPN 149
            MPGLGI+PS+ESYSIG+TACAKGG+WQEAL LLREM+ED  IK+DVV XXXXXXXXXXXXXXXXXXXXXX MP  GVRPN
Sbjct:    1 MPGLGIRPSVESYSIGLTACAKGGRWQEALVLLREMEEDDEIKLDVVXXXXXXXXXXXXXXXXXXXXXXXDMPNVGVRPN 80
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BLAST of mRNA_L-elsbetiae_contig10979.879.1 vs. uniprot
Match: A0A6H5K762_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5K762_9PHAE)

HSP 1 Score: 55.5 bits (132), Expect = 1.570e-5
Identity = 26/60 (43.33%), Postives = 41/60 (68.33%), Query Frame = 0 
Query:   46 SQDGDWRRAMQILDDARSGGNSGRMPGLGIQPSLESYSIGMTACAKGGQWQEALRLLREM 105
            S+ GDWR+A++ +D  +      ++PG  I    +SY + +TAC +GGQW++A+RLLREM
Sbjct:  144 SRSGDWRKALRAVDGMK------KLPGWLIDQ--KSYCMAITACGRGGQWEQAVRLLREM 195
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BLAST of mRNA_L-elsbetiae_contig10979.879.1 vs. uniprot
Match: UPI001C5271F2 (pentatricopeptide repeat-containing protein At2g37310 n=1 Tax=Macadamia integrifolia TaxID=60698 RepID=UPI001C5271F2)

HSP 1 Score: 54.7 bits (130), Expect = 2.810e-5
Identity = 34/96 (35.42%), Postives = 51/96 (53.12%), Query Frame = 0 
Query:   18 AADLVTEMLSIGLVPDAVTFSATIAACCSQDGDWRRAMQILDDARSGGNSGRMPGLGIQPSLESYSIGMTACAKGGQWQEALRLLREMQEDAHIKV 113
            A  L  EML+ G+ PD+VTF+A +AAC S  G    A +I D          +PG GIQP++E Y+  +    + G+  EA   + +M  + + KV
Sbjct:  466 AVFLFREMLTNGIRPDSVTFTAVLAAC-SHAGVVDEAWKIFD--------AMLPGYGIQPAVEQYACMVGVLCRAGKLSEAAEFISKMPIEPNAKV 552
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BLAST of mRNA_L-elsbetiae_contig10979.879.1 vs. uniprot
Match: W7TZ34_9STRA (Pentatricopeptide repeat containing protein (Fragment) n=1 Tax=Nannochloropsis gaditana TaxID=72520 RepID=W7TZ34_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 5.160e-5
Identity = 31/88 (35.23%), Postives = 47/88 (53.41%), Query Frame = 0 
Query:   21 LVTEMLSIGLVPDAVTFSATIAACCSQDGDWRRAMQILDDARSGGNSGRMPGLGIQPSLESYSIGMTACAKGGQWQEALRLLREMQED 108
            ++ +ML  GLVPD  T   TI   C +   WRRA+Q+L           M GL +   +  +++ +  C K G+W++ LR+LREM  D
Sbjct:  556 VLEDMLGRGLVPDLKTVK-TIMRTCVKKLAWRRAVQLL----------HMEGLPLDVVI--FTMAINTCGKAGEWEQGLRVLREMDSD 630
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BLAST of mRNA_L-elsbetiae_contig10979.879.1 vs. uniprot
Match: A0A4D9D4N9_9STRA (PPR_long domain-containing protein n=2 Tax=Nannochloropsis salina CCMP1776 TaxID=1027361 RepID=A0A4D9D4N9_9STRA)

HSP 1 Score: 53.9 bits (128), Expect = 5.650e-5
Identity = 31/88 (35.23%), Postives = 47/88 (53.41%), Query Frame = 0 
Query:   21 LVTEMLSIGLVPDAVTFSATIAACCSQDGDWRRAMQILDDARSGGNSGRMPGLGIQPSLESYSIGMTACAKGGQWQEALRLLREMQED 108
            ++ +ML  GLVPD  T   TI   C +   WRRA+Q+L           M GL +   +  +++ +  C K G+W++ LR+LREM  D
Sbjct:  556 VLEDMLGRGLVPDLKTVK-TIMRTCVKKLAWRRAVQLL----------HMEGLPLDVVI--FTMAINTCGKAGEWEQGLRVLREMDSD 630
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10979.879.1 vs. uniprot
Analysis Date: 2022-09-16 (Diamond blastp: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
D7FKL1_ECTSI1.070e-1683.75Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K762_9PHAE1.570e-543.33Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
UPI001C5271F22.810e-535.42pentatricopeptide repeat-containing protein At2g37... [more]
W7TZ34_9STRA5.160e-535.23Pentatricopeptide repeat containing protein (Fragm... [more]
A0A4D9D4N9_9STRA5.650e-535.23PPR_long domain-containing protein n=2 Tax=Nannoch... [more]
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InterPro
Analysis Name: InterProScan on OGS1.0
Date Performed: 2022-09-29
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR011990Tetratricopeptide-like helical domain superfamilyGENE3D1.25.40.10coord: 88..203
e-value: 3.0E-38
score: 133.0
coord: 1..87
e-value: 4.8E-15
score: 57.3
IPR011990Tetratricopeptide-like helical domain superfamilySUPERFAMILY48452TPR-likecoord: 2..141
IPR002885Pentatricopeptide repeatTIGRFAMTIGR00756TIGR00756coord: 116..150
e-value: 1.2E-8
score: 32.6
coord: 151..185
e-value: 1.2E-6
score: 26.3
coord: 81..113
e-value: 4.2E-5
score: 21.5
IPR002885Pentatricopeptide repeatPFAMPF13812PPR_3coord: 100..162
e-value: 4.1E-14
score: 52.4
coord: 164..196
e-value: 0.002
score: 18.1
IPR002885Pentatricopeptide repeatPFAMPF13041PPR_2coord: 1..46
e-value: 2.9E-7
score: 30.6
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 184..203
score: 5.492
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 114..148
score: 13.208
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 33..68
score: 8.67
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 78..112
score: 9.394
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 149..183
score: 11.016
IPR002885Pentatricopeptide repeatPROSITEPS51375PPRcoord: 1..32
score: 8.912
NoneNo IPR availablePANTHERPTHR46128FAMILY NOT NAMEDcoord: 1..62

Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10979contigL-elsbetiae_contig10979:930..6029 -
Analyses
This polypeptide is derived from or has results from the following analyses
Analysis NameDate Performed
InterProScan on OGS1.02022-09-29
Diamond blastp: OGS1.0 vs UniRef902022-09-16
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Relationships

This polypeptide derives from the following mRNA feature(s):

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10979.879.1mRNA_L-elsbetiae_contig10979.879.1Laminarionema elsbetiae ELsaHSoW15mRNAL-elsbetiae_contig10979 930..6029 -


Sequences
The following sequences are available for this feature:

polypeptide sequence

>prot_L-elsbetiae_contig10979.879.1 ID=prot_L-elsbetiae_contig10979.879.1|Name=mRNA_L-elsbetiae_contig10979.879.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=203bp
VYNSAITLCARLEQPKMAADLVTEMLSIGLVPDAVTFSATIAACCSQDGD
WRRAMQILDDARSGGNSGRMPGLGIQPSLESYSIGMTACAKGGQWQEALR
LLREMQEDAHIKVDVVAYSAAITACANAGKWEEALAILDEMPKSGVRPNE
VTCNAAIKACGDAGQWQHALSILRGMPNAGLSPTVITYNSAIAALGVAGK
NEQ
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Annotated Terms
The following terms have been associated with this polypeptide:
Vocabulary: INTERPRO
TermDefinition
IPR011990TPR-like_helical_dom_sf
IPR002885Pentatricopeptide_repeat