mRNA_L-elsbetiae_contig10965.867.1 (mRNA) Laminarionema elsbetiae ELsaHSoW15

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_L-elsbetiae_contig10965.867.1
Unique NamemRNA_L-elsbetiae_contig10965.867.1
TypemRNA
OrganismLaminarionema elsbetiae ELsaHSoW15 (Laminarionema elsbetiae ELsaHSoW15)
Homology
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BLAST of mRNA_L-elsbetiae_contig10965.867.1 vs. uniprot
Match: A0A6H5L7G0_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7G0_9PHAE)

HSP 1 Score: 73.9 bits (180), Expect = 9.030e-15
Identity = 41/69 (59.42%), Postives = 50/69 (72.46%), Query Frame = 2 
Query:    2 GVRMQRLWAMALLTLLPSANSRVAKNVDQIVDLCVGVVTEEQGDGGTCVKEGLELLSSEEPEENSSSLP 208
            GV  +RLWAMALL LLPSANS V KN+DQIV++CV V+TEE+ DGG  +KE L      EP+  S+S P
Sbjct:   14 GVWRRRLWAMALLKLLPSANSGVIKNLDQIVNICVDVLTEEREDGGKRLKESLAQPPVGEPDSASASEP 82
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BLAST of mRNA_L-elsbetiae_contig10965.867.1 vs. uniprot
Match: D7G019_ECTSI (Similar to importin 11 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G019_ECTSI)

HSP 1 Score: 73.9 bits (180), Expect = 2.260e-13
Identity = 41/69 (59.42%), Postives = 50/69 (72.46%), Query Frame = 2 
Query:    2 GVRMQRLWAMALLTLLPSANSRVAKNVDQIVDLCVGVVTEEQGDGGTCVKEGLELLSSEEPEENSSSLP 208
            GV  +RLWAMALL LLPSANS V KN+DQIV++CV V+TEE+ DGG  +KE L      EP+  S+S P
Sbjct: 1011 GVWRRRLWAMALLKLLPSANSGVIKNLDQIVNICVDVLTEEREDGGKRLKESLAQPPVGEPDSASASEP 1079
The following BLAST results are available for this feature:
BLAST of mRNA_L-elsbetiae_contig10965.867.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
A0A6H5L7G0_9PHAE9.030e-1559.42Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7G019_ECTSI2.260e-1359.42Similar to importin 11 n=1 Tax=Ectocarpus siliculo... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
L-elsbetiae_contig10965contigL-elsbetiae_contig10965:1831..3205 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Laminarionema elsbetiae ELsaHSoW152021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score72.8
Seed ortholog evalue9.2e-11
Seed eggNOG ortholog2880.D7G019
Hectar predicted targeting categorysignal peptide
EggNOG free text desc.Ran GTPase binding
EggNOG OGsCOG5657@1,KOG1993@2759
COG Functional cat.D
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Exons3
Model size277
Cds size267
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_L-elsbetiae_contig10965.867.1prot_L-elsbetiae_contig10965.867.1Laminarionema elsbetiae ELsaHSoW15polypeptideL-elsbetiae_contig10965 1841..3205 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815312.9670491-UTR-L-elsbetiae_contig10965:1830..18401622815312.9670491-UTR-L-elsbetiae_contig10965:1830..1840Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10965 1831..1840 +
1691682831.8105736-UTR-L-elsbetiae_contig10965:1830..18401691682831.8105736-UTR-L-elsbetiae_contig10965:1830..1840Laminarionema elsbetiae ELsaHSoW15UTRL-elsbetiae_contig10965 1831..1840 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815312.9775317-CDS-L-elsbetiae_contig10965:1840..19181622815312.9775317-CDS-L-elsbetiae_contig10965:1840..1918Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10965 1841..1918 +
1691682831.8203695-CDS-L-elsbetiae_contig10965:1840..19181691682831.8203695-CDS-L-elsbetiae_contig10965:1840..1918Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10965 1841..1918 +
1622815312.9925532-CDS-L-elsbetiae_contig10965:2495..25831622815312.9925532-CDS-L-elsbetiae_contig10965:2495..2583Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10965 2496..2583 +
1691682831.8284204-CDS-L-elsbetiae_contig10965:2495..25831691682831.8284204-CDS-L-elsbetiae_contig10965:2495..2583Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10965 2496..2583 +
1622815313.0060225-CDS-L-elsbetiae_contig10965:3104..32051622815313.0060225-CDS-L-elsbetiae_contig10965:3104..3205Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10965 3105..3205 +
1691682831.836386-CDS-L-elsbetiae_contig10965:3104..32051691682831.836386-CDS-L-elsbetiae_contig10965:3104..3205Laminarionema elsbetiae ELsaHSoW15CDSL-elsbetiae_contig10965 3105..3205 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_L-elsbetiae_contig10965.867.1

>prot_L-elsbetiae_contig10965.867.1 ID=prot_L-elsbetiae_contig10965.867.1|Name=mRNA_L-elsbetiae_contig10965.867.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=polypeptide|length=89bp
MQRLWAMALLTLLPSANSRVAKNVDQIVDLCVGVVTEEQGDGGTCVKEGL
ELLSSEEPEENSSSLPPNPLCSLGCRRREEPTSPSQRT*
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mRNA from alignment at L-elsbetiae_contig10965:1831..3205+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_L-elsbetiae_contig10965.867.1 ID=mRNA_L-elsbetiae_contig10965.867.1|Name=mRNA_L-elsbetiae_contig10965.867.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=mRNA|length=1375bp|location=Sequence derived from alignment at L-elsbetiae_contig10965:1831..3205+ (Laminarionema elsbetiae ELsaHSoW15)
TGGGGTGCGGATGCAAAGGTTGTGGGCGATGGCGCTCTTGACACTCTTGC
CTTCGGCAAACAGCAGGGTCGCCAAGAATGTCGACCAGGTACGGTGTGAT
ACTTGGCTCTTTTGTGTGTGACTGTTTCTCTGTTTTTGTTTATGGTGCTT
CAAAGTTGCATGTTTGGAGGACTGGGGCTTATTTACCGCAACAGGCTGTA
ATAGCCTTTACTGTCATGTACATAAACACTACAGCTTGTGTATGCAATGG
CACGCGCGTGTGTTGGTGAATACTGTAATGCCCCACCGGCGTCTTTGGTT
CTGAGAGGCTGTTTTCTTGGCTGCAACTTGGTCTGATTACGTTCCTGTTG
GTAATTCATCACATGCAACAGCCTACGAAGTATGCATCACAGGTTGTGTA
CTCATTTGGAATTGTGGGCCAGGGTCGTACTAGAGCACCCTGCCATTTTG
TTGCGTTTGTGCTTTAAGCATATATTTTGGTATGGTAGCAGACACATGAA
GCAGGCAAAGAGTTTTCTGCAAGTTTAATGCGAAAGGGGAACAGCATTTG
AAGGAGACCGTGTCATATCGTGCCAATGAGTATGCCCATTCGCGTGGATA
TGCTAGCCTCAACCTTGACCCCCTCGAACTCTTGGCGCTGTTACTACTGC
CGCTGCTACATGCAGATAGTGGACCTTTGCGTGGGCGTGGTAACGGAGGA
GCAGGGAGACGGAGGGACGTGCGTCAAGGAGGGCCTTGAACTGCTCTCTT
CAGGTGCTATAGATGCTCAATTCCCCCAGCAGCTCAGGTTGCCTGGCTCG
CACGTGTTGAGGAAGTTTTCAACTATCGATACACGCGTGGTTGGTTGCAA
ACACGTGCGAAAGAAGTGTAACATTTCGGCGGTCACACGCCCCACAATCT
CTAGACTATTATACCACCCCCGTGTGAACCATCTGACCCCCAATATTTTT
GAGCATGTTAACGGTACTGCACTGGAAAGCTGAGCTGCTTGTGTTAGAAT
GGTAGCATTGTCTTTTTCCTAAACGAGGTAAGCATGTTCGTGGTTCCACC
GGGGGCGACATTCAAAGGGCGGTAGGGGTGCGGCTCCTAGTTTTGGTGTG
TTCGAGCGCTGACAGCTCGGACGCCACGATCGACTACCAAAATCACCATC
GTCTATGCCCCCACCCGGCCCCCTTCCGCGCCTGCCTCTCCCCTTGTGAT
CCGTCATTGCTGTGGCCTCTATCTCTCGTTCGTCTTCTTGCCGATTAAAC
ACCCCGCCGACACGTGCTCAGCAGAGGAACCGGAGGAGAACAGTTCCTCC
TTACCACCGAACCCTTTGTGCAGTCTAGGCTGCAGAAGACGCGAAGAGCC
GACGTCGCCGTCACAGCGGACTTGA
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Coding sequence (CDS) from alignment at L-elsbetiae_contig10965:1831..3205+

>mRNA_L-elsbetiae_contig10965.867.1 ID=mRNA_L-elsbetiae_contig10965.867.1|Name=mRNA_L-elsbetiae_contig10965.867.1|organism=Laminarionema elsbetiae ELsaHSoW15|type=CDS|length=534bp|location=Sequence derived from alignment at L-elsbetiae_contig10965:1831..3205+ (Laminarionema elsbetiae ELsaHSoW15)
ATGCAAAGGTTGTGGGCGATGGCGCTCTTGACACTCTTGCCTTCGGCAAA
CAGCAGGGTCGCCAAGAATGTCGACCAGATGCAAAGGTTGTGGGCGATGG
CGCTCTTGACACTCTTGCCTTCGGCAAACAGCAGGGTCGCCAAGAATGTC
GACCAGATAGTGGACCTTTGCGTGGGCGTGGTAACGGAGGAGCAGGGAGA
CGGAGGGACGTGCGTCAAGGAGGGCCTTGAACTGCTCTCTTCAGATAGTG
GACCTTTGCGTGGGCGTGGTAACGGAGGAGCAGGGAGACGGAGGGACGTG
CGTCAAGGAGGGCCTTGAACTGCTCTCTTCAGAGGAACCGGAGGAGAACA
GTTCCTCCTTACCACCGAACCCTTTGTGCAGTCTAGGCTGCAGAAGACGC
GAAGAGCCGACGTCGCCGTCACAGCGGACTTGAAGGAACCGGAGGAGAAC
AGTTCCTCCTTACCACCGAACCCTTTGTGCAGTCTAGGCTGCAGAAGACG
CGAAGAGCCGACGTCGCCGTCACAGCGGACTTGA
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